
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_UTR_m3_run2.txt

#BEAR
dd####cccqqqqqqqqccc4444dd	chr3:121987957-121988167(+)$1	210	75	101	15.9013
=========qqqqqqqq=========	chr15:79746620-79746835(-)$1	215	136	162	16.6106
eeeee[cccqqqqqqqqccc]eeeee	chr17:23944953-23945171(+)$1	218	177	203	16.2882
bb[bb[cccqqqqqqqqccc]bbbb]	chr1:120229750-120229968(+)$1	218	37	63	14.7823
::gggggggqqqqqqqqggggggg:b	chr14:32912577-32912794(+)$1	217	5	31	13.5773
iigggggggqqqqqqqqggggggg22	chr2:103897154-103897377(+)$1	223	17	43	16.1872
eeee!!cccqqqqqqqqccc22eeee	chr18:64659922-64660133(-)$1	211	64	90	15.9387
F:gggggggqqqqqqqqggggggg:f	chr7:52689888-52690102(-)$1	214	17	43	14.1484
ccgggggggqqqqqqqqgggggggdd	chr18:61747432-61747650(+)$1	218	98	124	16.3673
iiiiiiiiiqqqqqqqqiiiiiiiii	chr11:69730616-69730829(-)$1	213	153	179	16.4439
ffffff[bbqqqqqqqqbb333ffff	chr7:140863680-140863892(+)$1	212	115	141	14.9878
ddd[eeeeeqqqqqqqqeeeee22dd	chr9:62640935-62641150(-)$1	215	140	166	15.2280
ffffff[bbqqqqqqqqbbffffffc	chr6:82675203-82675432(-)$1	229	31	57	14.7644
ffffff[bbqqqqqqqqbb]ffffff	chr12:79944300-79944522(-)$1	222	132	158	14.7365
cc[a[ddddqqqqqqqqdddd]a]cc	chr9:54759717-54759934(+)$1	217	102	128	15.3848
:dddd[cccqqqqqqqqccc]dddd:	chr10:95005734-95005958(+)$1	224	82	108	14.1253
!!gggggggqqqqqqqqgggggggbb	chr5:28535781-28535993(-)$1	212	63	89	16.1635
b[ccc[cccqqqqqqqqcccccc]bb	chr1:38235021-38235241(-)$1	220	86	112	16.2045
dd!!eeeeerrrrrrrrreeeee333	chr1:133829958-133830176(+)$1	218	159	185	9.4678
!hhhhhhhhqqqqqqqqhhhhhhhh3	chr11:53234058-53234274(+)$1	216	78	104	14.4699
dd[dddd[aqqqqqqqqadddddddd	chr5:45916365-45916578(+)$1	213	128	154	14.8057
cc!!bb[bbqqqqqqqqbb]bb22cc	chr2:24781675-24781893(-)$1	218	16	42	14.6935
e"""eeeeeqqqqqqqqeeeee333e	chr4:34900297-34900517(-)$1	220	174	200	15.8371
gggg!!cccqqqqqqqqccc]ggggg	chr9:20302941-20303157(-)$1	216	54	80	16.8604
ee!!eeeeeqqqqqqqqeeeee333e	chr2:138112851-138113067(+)$1	216	3	29	16.0669
[eeeee[bbqqqqqqqqbb]eeeeec	chr14:21532574-21532789(+)$1	215	50	76	15.3912
eeee!!cccqqqqqqqqccc22eeee	chr5:123905354-123905571(+)$1	217	130	156	15.9387
eee[ccc[aqqqqqqqqa]ccc]eee	chr17:23957068-23957282(+)$1	214	59	85	16.0029
ccc[cccbbqqqqqqqqbb]ccc]cc	chr2:152719351-152719566(+)$1	215	78	104	16.1298
&hhhhhhhhqqqqqqqqhhhhhhhhd	chr13:55415134-55415356(+)$1	222	164	190	13.6427
fffff[cccqqqqqqqqccc]fffff	chr15:98761881-98762096(-)$1	215	68	94	15.8994
ccc!!ddddqqqqqqqqdddd22ccc	chr11:101350969-101351182(-)$1	213	48	74	15.0692
eeccc[cccqqqqqqqqccc22ccc]	chr16:13814117-13814336(+)$1	219	105	131	16.3643
ddd[ccc[aqqqqqqqqa]ccc]ddd	chr6:65030400-65030610(+)$1	210	167	193	15.7811
dbb[eeeeeqqqqqqqqeeeeebb]d	chr16:37882913-37883132(+)$1	219	74	100	14.4513
""ccc[cccqqqqqqqqcccccc444	chr3:87973662-87973887(+)$1	225	46	72	16.8351
%%gggggggqqqqqqqqgggggggbb	chr17:33783120-33783341(-)$1	221	85	111	14.7884
eee!!ddddqqqqqqqqddddeeeee	chr11:86080519-86080729(-)$1	210	164	190	14.9181
ffffeeeeeqqqqqqqqeeeee22ff	chr9:82760159-82760374(-)$1	215	74	100	14.8341
c[ccc[cccqqqqqqqqcccccc]cc	chr1:192769996-192770209(+)$1	213	143	169	16.9027
!!ccc!!bbqqqqqqqqbb22ccc22	chr19:5901137-5901353(-)$1	216	6	32	15.3877
bb[dddd[aqqqqqqqqadddd4444	chr2:90705672-90705886(+)$1	214	166	192	15.0736
iiiiiiiiiqqqqqqqqiiiiiiiii	chr8:109895892-109896110(+)$1	218	92	118	16.4439
ddccc[cccqqqqqqqqcccccc333	chr6:122268535-122268758(-)$1	223	177	203	16.9408
#hhhhhhhhqqqqqqqqhhhhhhhh3	chr4:21752034-21752251(+)$1	217	185	211	14.3979
[a[ffffffqqqqqqqqffffffa]d	chr11:116028760-116028977(-)$1	217	173	199	15.1798
""dddd[bbqqqqqqqqbbdddd333	chr13:100191584-100191796(-)$1	212	157	183	15.2945
c:a[eeeeeqqqqqqqqeeeee]a::	chr4:133560688-133560919(-)$1	231	34	60	13.0710
eee[eeeeeqqqqqqqqeeeee]eee	chrX:101153963-101154176(-)$1	213	2	28	15.4802
dd[ffffffqqqqqqqqffffff]dd	chr18:78020978-78021197(+)$1	219	125	151	15.1046
ffddddcccqqqqqqqqccc]dddd]	chr12:33934871-33935082(+)$1	211	36	62	15.4744
cc[ffffffqqqqqqqqffffff]cc	chr5:76052588-76052799(+)$1	211	152	178	15.4197
ccdddd[bbqqqqqqqqbb333dddd	chr9:30972107-30972318(-)$1	211	111	137	15.0330

#otherMatches

#Seq PSSM
AAGAAGUUCAAGAAAAAGAAGAAAUU	chr3:121987957-121988167(+)$1	210	75	101	15.9013
GGUUGGGGUGAAGAUGUGCCUCAACC	chr15:79746620-79746835(-)$1	215	136	162	16.6106
AGAGACCAGUGUGAGUGUUGUUCUCU	chr17:23944953-23945171(+)$1	218	177	203	16.2882
GGUGUGUAGUUGUGUAUCUAAACCCC	chr1:120229750-120229968(+)$1	218	37	63	14.7823
UGACUCUGAAGUGGCUCUCAGAGUAG	chr14:32912577-32912794(+)$1	217	5	31	13.5773
gaagagauuauuguugaaaucuuuag	chr2:103897154-103897377(+)$1	223	17	43	16.1872
UUCUCUUGACUUUCCCAUUAUCAGAA	chr18:64659922-64660133(-)$1	211	64	90	15.9387
AGGCUCCUGGGGAGCUGCGGGGGCGG	chr7:52689888-52690102(-)$1	214	17	43	14.1484
UUCUUAGGGUUUUCCAUCCCUGGGGU	chr18:61747432-61747650(+)$1	218	98	124	16.3673
GCUCCCUUGGCCAGGAAUGAGGGAGC	chr11:69730616-69730829(-)$1	213	153	179	16.4439
AUUUUAAACUUGAAACUGUGAAUAAG	chr7:140863680-140863892(+)$1	212	115	141	14.9878
GUUAAGGGAUUAAAACCUCCCUAAAG	chr9:62640935-62641150(-)$1	215	140	166	15.2280
GGAUUCUGACUAAAUUUUCGAAUCUU	chr6:82675203-82675432(-)$1	229	31	57	14.7644
AUGUGUGGAUAUUUAUUUUGGCAUAU	chr12:79944300-79944522(-)$1	222	132	158	14.7365
CACUGCUUGGAUUUUCACAGGGAUUG	chr9:54759717-54759934(+)$1	217	102	128	15.3848
UGAGUGAGUAUUUAUAAACUGGCUCU	chr10:95005734-95005958(+)$1	224	82	108	14.1253
GACCCGCGUGGGCGUGGGCGUGGGCA	chr5:28535781-28535993(-)$1	212	63	89	16.1635
UGGUGuguuuuugucuugaccauggg	chr1:38235021-38235241(-)$1	220	86	112	16.2045
GUUUUCACUUUUUUUUUUAGUGGUUU	chr1:133829958-133830176(+)$1	218	159	185	9.4678
AAAAUCAUUUGGUAAAUAAUGGUUUG	chr11:53234058-53234274(+)$1	216	78	104	14.4699
GUGCAGCACAAGAAGCCGGCUGACAU	chr5:45916365-45916578(+)$1	213	128	154	14.8057
AGUGGCAAGAACAGAUCCUGGUGCCU	chr2:24781675-24781893(-)$1	218	16	42	14.6935
ACACUUGGUACAUGUAGAUUAAAUAU	chr4:34900297-34900517(-)$1	220	174	200	15.8371
uuguuaaugugaaaauucaucacagg	chr9:20302941-20303157(-)$1	216	54	80	16.8604
AUAUCUUAAGAUAGUAUUUAAGUAAA	chr2:138112851-138113067(+)$1	216	3	29	16.0669
AUGGGCAGUCAGAGGUAGCAGCCCAU	chr14:21532574-21532789(+)$1	215	50	76	15.3912
UGAGUUAAUUUCAUCCUGUUUUCUCA	chr5:123905354-123905571(+)$1	217	130	156	15.9387
AUCUCCUCCAGCCAUUCGUAGGCGGU	chr17:23957068-23957282(+)$1	214	59	85	16.0029
GCUGCAUCUAUAUCACAAGCAUGGAG	chr2:152719351-152719566(+)$1	215	78	104	16.1298
CAAGGAGACAGACUUGAGUCUCUUUG	chr13:55415134-55415356(+)$1	222	164	190	13.6427
AGGAGAGGAGUACUAAGUCCAUUCCU	chr15:98761881-98762096(-)$1	215	68	94	15.8994
CUGGUACAGAAUAUCACCUGUGACAG	chr11:101350969-101351182(-)$1	213	48	74	15.0692
GACUGUGGACGUUGACUUCCCUUGGA	chr16:13814117-13814336(+)$1	219	105	131	16.3643
CUUAAAACCUUUCAAUUGCUUUAAAG	chr6:65030400-65030610(+)$1	210	167	193	15.7811
CCAUGUCUGUAGCCAUCCAGGCUGUG	chr16:37882913-37883132(+)$1	219	74	100	14.4513
AAUUGUAAAUAGAGACCUUUCAAAUG	chr3:87973662-87973887(+)$1	225	46	72	16.8351
UGCGCAAUUUUUUUUGUAGUUGUGGC	chr17:33783120-33783341(-)$1	221	85	111	14.7884
UCAAAUGGAAUAAAUUAUUCAUGAAG	chr11:86080519-86080729(-)$1	210	164	190	14.9181
AAAUUAUUUAGCUUUACGGAUGUUGU	chr9:82760159-82760374(-)$1	215	74	100	14.8341
GCGCUUGCACUGUUCUCUGCAGCCUC	chr1:192769996-192770209(+)$1	213	143	169	16.9027
UUAGGCACAUAAACCAUUGCACCUUU	chr19:5901137-5901353(-)$1	216	6	32	15.3877
AGAUGCUAGAAAGUCAGCAGCAACCA	chr2:90705672-90705886(+)$1	214	166	192	15.0736
UAGGAGUUAUUGGGAUUUGAUUCCUG	chr8:109895892-109896110(+)$1	218	92	118	16.4439
GUGCCAUGAACAUCAAAUUAGGUCCU	chr6:122268535-122268758(-)$1	223	177	203	16.9408
CGCAGGUAAACAGCUCAUUGCCUGCU	chr4:21752034-21752251(+)$1	217	185	211	14.3979
CCUGUAUGAAAUGUUUAUCAUAUGUG	chr11:116028760-116028977(-)$1	217	173	199	15.1798
UGUGUAUGGUAUUAUGUCUUAUAAUC	chr13:100191584-100191796(-)$1	212	157	183	15.2945
GAAGCCUGCCAUGCACAGCAGGGUGU	chr4:133560688-133560919(-)$1	231	34	60	13.0710
UCUAUACCUGUGUAACGAGGUGGAGA	chrX:101153963-101154176(-)$1	213	2	28	15.4802
GCUGGGUUUGAACCAUAAAGCCCUGU	chr18:78020978-78021197(+)$1	219	125	151	15.1046
UUGUGGACAAGCCUCCAUGUACUGCG	chr12:33934871-33935082(+)$1	211	36	62	15.4744
aaucaaauaaauuuuuCUGUUUGUUU	chr5:76052588-76052799(+)$1	211	152	178	15.4197
CAGCGGAUGAUAAUGAGCACGCCCGC	chr9:30972107-30972318(-)$1	211	111	137	15.0330

#DB
((....(((........)))....))	chr3:121987957-121988167(+)$1	1	75	101	15.9013
(((((((((........)))))))))	chr15:79746620-79746835(-)$1	1	136	162	16.6106
(((((.(((........))).)))))	chr17:23944953-23945171(+)$1	1	177	203	16.2882
((.((.(((........))).)))).	chr1:120229750-120229968(+)$1	1	37	63	14.7823
..(((((((........))))))).(	chr14:32912577-32912794(+)$1	1	5	31	13.5773
(((((((((........)))))))..	chr2:103897154-103897377(+)$1	1	17	43	16.1872
((((..(((........)))..))))	chr18:64659922-64660133(-)$1	1	64	90	15.9387
(.(((((((........))))))).(	chr7:52689888-52690102(-)$1	1	17	43	14.1484
))(((((((........)))))))((	chr18:61747432-61747650(+)$1	1	98	124	16.3673
(((((((((........)))))))))	chr11:69730616-69730829(-)$1	1	153	179	16.4439
((((((.((........))...))))	chr7:140863680-140863892(+)$1	1	115	141	14.9878
(((.(((((........)))))..))	chr9:62640935-62641150(-)$1	1	140	166	15.2280
((((((.((........))))))))(	chr6:82675203-82675432(-)$1	1	31	57	14.7644
((((((.((........)).))))))	chr12:79944300-79944522(-)$1	1	132	158	14.7365
((.(.((((........)))).).))	chr9:54759717-54759934(+)$1	1	102	128	15.3848
.((((.(((........))).)))).	chr10:95005734-95005958(+)$1	1	82	108	14.1253
..(((((((........)))))))))	chr5:28535781-28535993(-)$1	1	63	89	16.1635
(.(((.(((........)))))).))	chr1:38235021-38235241(-)$1	1	86	112	16.2045
((..(((((.........)))))...	chr1:133829958-133830176(+)$1	1	159	185	9.4678
.((((((((........)))))))).	chr11:53234058-53234274(+)$1	1	78	104	14.4699
((.((((.(........)))))))))	chr5:45916365-45916578(+)$1	1	128	154	14.8057
((..((.((........)).))..))	chr2:24781675-24781893(-)$1	1	16	42	14.6935
(...(((((........)))))...)	chr4:34900297-34900517(-)$1	1	174	200	15.8371
((((..(((........))).)))))	chr9:20302941-20303157(-)$1	1	54	80	16.8604
((..(((((........)))))...)	chr2:138112851-138113067(+)$1	1	3	29	16.0669
.(((((.((........)).))))))	chr14:21532574-21532789(+)$1	1	50	76	15.3912
((((..(((........)))..))))	chr5:123905354-123905571(+)$1	1	130	156	15.9387
(((.(((.(........).))).)))	chr17:23957068-23957282(+)$1	1	59	85	16.0029
(((.(((((........)).))).))	chr2:152719351-152719566(+)$1	1	78	104	16.1298
.((((((((........)))))))))	chr13:55415134-55415356(+)$1	1	164	190	13.6427
(((((.(((........))).)))))	chr15:98761881-98762096(-)$1	1	68	94	15.8994
(((..((((........))))..)))	chr11:101350969-101351182(-)$1	1	48	74	15.0692
(((((.(((........)))..))).	chr16:13814117-13814336(+)$1	1	105	131	16.3643
(((.(((.(........).))).)))	chr6:65030400-65030610(+)$1	1	167	193	15.7811
(((.(((((........))))))).)	chr16:37882913-37883132(+)$1	1	74	100	14.4513
..(((.(((........))))))...	chr3:87973662-87973887(+)$1	1	46	72	16.8351
..(((((((........)))))))))	chr17:33783120-33783341(-)$1	1	85	111	14.7884
(((..((((........)))))))))	chr11:86080519-86080729(-)$1	1	164	190	14.9181
(((((((((........)))))..))	chr9:82760159-82760374(-)$1	1	74	100	14.8341
(.(((.(((........)))))).))	chr1:192769996-192770209(+)$1	1	143	169	16.9027
..(((..((........))..)))..	chr19:5901137-5901353(-)$1	1	6	32	15.3877
((.((((.(........)))))....	chr2:90705672-90705886(+)$1	1	166	192	15.0736
(((((((((........)))))))))	chr8:109895892-109896110(+)$1	1	92	118	16.4439
(((((.(((........))))))...	chr6:122268535-122268758(-)$1	1	177	203	16.9408
.((((((((........)))))))).	chr4:21752034-21752251(+)$1	1	185	211	14.3979
.(.((((((........))))))).)	chr11:116028760-116028977(-)$1	1	173	199	15.1798
..((((.((........))))))...	chr13:100191584-100191796(-)$1	1	157	183	15.2945
).(.(((((........))))).)..	chr4:133560688-133560919(-)$1	1	34	60	13.0710
(((.(((((........))))).)))	chrX:101153963-101154176(-)$1	1	2	28	15.4802
((.((((((........)))))).))	chr18:78020978-78021197(+)$1	1	125	151	15.1046
(((((((((........))).)))).	chr12:33934871-33935082(+)$1	1	36	62	15.4744
((.((((((........)))))).))	chr5:76052588-76052799(+)$1	1	152	178	15.4197
))((((.((........))...))))	chr9:30972107-30972318(-)$1	1	111	137	15.0330

#PSSM
e : 0.16	c : 0.16	d : 0.15	f : 0.11	b : 0.05	i : 0.05	! : 0.05	: : 0.03	[ : 0.03	" : 0.03	= : 0.01	F : 0.01	g : 0.01	& : 0.01	% : 0.01	# : 0.01	
e : 0.16	d : 0.15	c : 0.13	f : 0.11	b : 0.05	: : 0.05	i : 0.05	h : 0.05	" : 0.05	! : 0.03	[ : 0.03	= : 0.01	g : 0.01	% : 0.01	a : 0.01	
c : 0.15	e : 0.13	[ : 0.13	g : 0.13	d : 0.11	f : 0.09	! : 0.05	h : 0.05	i : 0.03	# : 0.01	= : 0.01	" : 0.01	b : 0.01	a : 0.01	
f : 0.15	g : 0.13	[ : 0.13	d : 0.11	c : 0.11	! : 0.09	e : 0.07	h : 0.05	i : 0.03	# : 0.01	= : 0.01	b : 0.01	a : 0.01	" : 0.01	
e : 0.18	c : 0.16	f : 0.13	g : 0.11	d : 0.11	! : 0.09	h : 0.05	b : 0.03	i : 0.03	# : 0.01	= : 0.01	[ : 0.01	
[ : 0.16	e : 0.16	d : 0.15	g : 0.11	f : 0.11	! : 0.07	h : 0.05	c : 0.05	i : 0.03	# : 0.01	= : 0.01	b : 0.01	
c : 0.32	e : 0.15	[ : 0.13	g : 0.11	d : 0.09	h : 0.05	f : 0.05	i : 0.03	= : 0.01	! : 0.01	
c : 0.26	b : 0.16	e : 0.15	g : 0.11	[ : 0.07	d : 0.05	h : 0.05	f : 0.05	i : 0.03	= : 0.01	
c : 0.26	b : 0.16	e : 0.15	g : 0.11	a : 0.07	d : 0.05	h : 0.05	f : 0.05	i : 0.03	= : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
c : 0.26	b : 0.16	e : 0.13	g : 0.11	a : 0.07	d : 0.05	h : 0.05	f : 0.05	i : 0.03	= : 0.01	r : 0.01	
c : 0.26	b : 0.16	e : 0.15	g : 0.11	d : 0.09	h : 0.05	f : 0.05	i : 0.03	] : 0.03	= : 0.01	
c : 0.30	e : 0.15	g : 0.11	d : 0.11	f : 0.07	] : 0.07	h : 0.05	i : 0.03	3 : 0.03	= : 0.01	2 : 0.01	
e : 0.16	c : 0.13	] : 0.11	g : 0.11	d : 0.11	f : 0.09	2 : 0.07	h : 0.05	i : 0.03	3 : 0.03	4 : 0.01	= : 0.01	b : 0.01	
e : 0.20	c : 0.15	g : 0.13	f : 0.11	d : 0.09	2 : 0.07	h : 0.05	b : 0.03	i : 0.03	3 : 0.03	4 : 0.01	= : 0.01	] : 0.01	
g : 0.13	f : 0.13	c : 0.13	e : 0.11	d : 0.09	2 : 0.07	] : 0.07	h : 0.05	4 : 0.03	b : 0.03	i : 0.03	3 : 0.03	= : 0.01	a : 0.01	
e : 0.13	g : 0.13	] : 0.11	d : 0.09	3 : 0.09	f : 0.07	4 : 0.05	2 : 0.05	h : 0.05	c : 0.05	b : 0.03	i : 0.03	a : 0.03	= : 0.01	
d : 0.16	e : 0.13	c : 0.13	f : 0.09	3 : 0.09	b : 0.07	: : 0.05	h : 0.05	2 : 0.03	i : 0.03	] : 0.03	4 : 0.03	= : 0.01	g : 0.01	
d : 0.18	e : 0.15	c : 0.15	f : 0.09	3 : 0.09	b : 0.07	] : 0.05	2 : 0.03	i : 0.03	: : 0.03	4 : 0.03	= : 0.01	g : 0.01	

#score	811.2941119817127
#seq	53
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_CDS_m2_run1.txt

#BEAR
dd[ddddqqqqqqqqdddd]dd	chr7:125355930-125356177(-)$1	247	138	160	14.2718
$ffffffqqqqqqqqffffff7	chr2:72808370-72808621(-)$1	251	153	175	14.0060
ggbb[bbqqqqqqqqbb]bb66	chr3:9264661-9264908(+)$1	247	66	88	12.7210
ddd[cccqqqqqqqqcccdddd	chr7:31371791-31372050(-)$1	259	139	161	14.0609
f[eeeeeqqqqqqqqeeeeeff	chr11:98064596-98064857(+)$1	261	168	190	14.8547
##eeeeeqqqqqqqqeeeee]e	chr1:75312103-75312325(-)$1	222	115	137	15.1932
gggggggqqqqqqqqggggggg	chr10:36716792-36717021(+)$1	229	180	202	14.7202
"eeeeeaqqqqqqqqa]eeeee	chrX:54640325-54640594(-)$1	269	135	157	14.9015
!!eeeeeqqqqqqqqeeeeeee	chr2:34678228-34678455(-)$1	227	79	101	15.1608
g[eeeeeqqqqqqqqeeeee]g	chr11:80208900-80209151(+)$1	251	177	199	15.3241
"""ddddqqqqqqqqdddd333	chr3:88991900-88992124(+)$1	224	197	219	15.2175
c!!ddddqqqqqqqqdddd22c	chr2:49404120-49404339(+)$1	219	38	60	14.6594
cc!!cccqqqqqqqqccc22cc	chr13:69877557-69877786(-)$1	229	49	71	14.7788
:ffffffqqqqqqqqffffff:	chr9:61263310-61263535(+)$1	225	76	98	12.9119
dda[cccqqqqqqqqccc]a]d	chr6:148791333-148791556(-)$1	223	72	94	14.4919
gggg[bbqqqqqqqqbb]gggg	chr18:9214217-9214439(+)$1	222	122	144	14.6454
cc[ddddqqqqqqqqdddd]cc	chr7:133700611-133700839(-)$1	228	76	98	14.7697
:ddddbbqqqqqqqqbb]dddd	chr16:33497196-33497438(+)$1	242	183	205	12.9747
eee[a[aqqqqqqqqa]a]eee	chr9:62658992-62659253(-)$1	261	102	124	14.3480
dddddddqqqqqqqqdddd]dd	chr6:128315649-128315880(+)$1	231	190	212	14.0089
iiiii[aqqqqqqqqaiiiiii	chr12:112777960-112778181(+)$1	221	44	66	14.8989
b[eeeeeqqqqqqqqeeeeebb	chr1:179377981-179378217(+)$1	236	116	138	14.4791
!!eeeeeqqqqqqqqeeeeeee	chr2:34678276-34678538(-)$1	262	162	184	15.1608
ccc!!bbqqqqqqqqbb22ccc	chr11:118899932-118900164(-)$1	232	110	132	14.1401
d[eeeeeqqqqqqqqeeeee22	chr6:119747207-119747429(-)$1	222	106	128	14.9944
b####bbqqqqqqqqbb4444b	chr2:155923912-155924165(-)$1	253	88	110	14.0542
dd:ddddqqqqqqqqddddddd	chr12:110053592-110053830(+)$1	238	193	215	12.8010
ccc!!bbqqqqqqqqbb]ccc]	chr19:29038845-29039071(+)$1	226	123	145	14.6157
ggggcccqqqqqqqqccc333g	chr6:71389982-71390222(-)$1	240	31	53	15.2004
=======qqqqqqqq=======	chr3:16104001-16104231(+)$1	230	24	46	15.1346
[ffffffqqqqqqqqfffffff	chr11:35591182-35591407(+)$1	225	126	148	14.4645
&&eeeeeqqqqqqqqeeeeeee	chr9:62645330-62645573(-)$1	243	217	239	13.7386
cc[ddddqqqqqqqqdddd]cc	chr9:106073576-106073808(+)$1	232	178	200	14.7697
dddd[bbqqqqqqqqbb]dddd	chr9:74737218-74737446(+)$1	228	198	220	13.8165
[ffffffqqqqqqqqffffff2	chr6:28193014-28193239(-)$1	225	94	116	14.5775
iiii[bbqqqqqqqqbb333ii	chr4:81942505-81942730(-)$1	225	122	144	14.8476
cffffffqqqqqqqqffffff]	chr11:6375064-6375301(-)$1	237	131	153	14.6457
=====bbqqqqqqqqbb]====	chr3:123994935-123995161(+)$1	226	33	55	14.8527
cffffffqqqqqqqqffffff:	chr5:108698571-108698803(+)$1	232	123	145	13.7844
""eeeeeqqqqqqqqeeeee22	chr15:79659014-79659250(-)$1	236	42	64	15.1221
b!!bb[aqqqqqqqqa]bb]bb	chr2:102291372-102291627(-)$1	255	5	27	13.3420
cc!!cccqqqqqqqqccc22cc	chr2:153057193-153057430(-)$1	237	107	129	14.7788
c[eeeeeqqqqqqqqeeeee]c	chr11:24064073-24064311(+)$1	238	17	39	15.3662
b[eeeeeqqqqqqqqeeeee]b	chr17:35292810-35293038(-)$1	228	170	192	14.9066
dd[ddddqqqqqqqqdddd333	chr12:102296678-102296901(-)$1	223	119	141	14.9178
$ffffffqqqqqqqqffffff4	chr19:37294797-37295018(+)$1	221	116	138	14.5255
!ccc[bbqqqqqqqqbb]ccc2	chr10:41916607-41916843(-)$1	236	123	145	14.5245
gg!!cccqqqqqqqqccc22gg	chr11:87862968-87863229(+)$1	261	176	198	14.7784
cccbb[aqqqqqqqqa]bb333	chr17:84174910-84175136(+)$1	226	141	163	14.1985
hhhhh[aqqqqqqqqa]hhhhh	chr6:86475650-86475881(-)$1	231	88	110	12.7530
gggggggqqqqqqqqggggggg	chr7:88008181-88008408(+)$1	227	195	217	14.7202
[ffffffqqqqqqqqffffff]	chr13:54687080-54687306(-)$1	226	114	136	14.7213
"ccccccqqqqqqqqccc22cc	chr12:77488062-77488287(+)$1	225	26	48	14.6106
!dddd[aqqqqqqqqa]dddd]	chr3:95568496-95568721(-)$1	225	27	49	14.4715
i####bbqqqqqqqqbb4444i	chr4:108010965-108011202(+)$1	237	23	45	14.5008
dddddddqqqqqqqqdddd]dd	chr2:105524963-105525186(+)$1	223	14	36	14.0089
:ffffffqqqqqqqqffffff:	chr3:107134974-107135204(-)$1	230	188	210	12.9119
gabb!!aqqqqqqqqa22bb]a	chr9:88351384-88351616(-)$1	232	90	112	13.2605
gg[ddddqqqqqqqqdddd]gg	chr12:8505902-8506123(-)$1	221	188	210	14.7694
[ffffffqqqqqqqqffffff]	chr12:77487764-77487987(+)$1	223	183	205	14.7213
:ffffffqqqqqqqqffffff:	chr16:91656303-91656572(+)$1	269	241	263	12.9119
c[eeeeeqqqqqqqqeeeee33	chr6:38768572-38768798(-)$1	226	109	131	15.6062
eeeeeeeqqqqqqqqeeeee::	chrX:91882646-91882871(+)$1	225	177	199	13.0594
!a[ddddqqqqqqqqddddaee	chr6:113397251-113397479(+)$1	228	156	178	14.4800
dffffffqqqqqqqqffffff4	chr7:138054396-138054644(+)$1	248	170	192	14.5024
eeeeeeeqqqqqqqqeeeee33	chr19:41633391-41633622(+)$1	231	164	186	15.1409
c####bbqqqqqqqqbb4444c	chr15:53176077-53176324(-)$1	247	152	174	14.5138

#otherMatches

#Seq PSSM
UCGUUGGGGCAAGAGCUGAGGA	chr7:125355930-125356177(-)$1	247	138	160	14.2718
AACUUGGCAAACAUUUCAAGUA	chr2:72808370-72808621(-)$1	251	153	175	14.0060
UUAAGACUUUAUAUUGUGUUUC	chr3:9264661-9264908(+)$1	247	66	88	12.7210
CUGACUGAACUUCUCCGGCGGU	chr7:31371791-31372050(-)$1	259	139	161	14.0609
CAGCUCCAACAGCAGGGAGCGU	chr11:98064596-98064857(+)$1	261	168	190	14.8547
AACACAGAGAUCCACCUGUGAG	chr1:75312103-75312325(-)$1	222	115	137	15.1932
CUAUGUACAAAUGGAUGCAUGG	chr10:36716792-36717021(+)$1	229	180	202	14.7202
GUUACUCAAGCAGCCGAAGUGA	chrX:54640325-54640594(-)$1	269	135	157	14.9015
CAGUUUUUAUUUGUUAAAAUGG	chr2:34678228-34678455(-)$1	227	79	101	15.1608
UUGGAGAUUAAACCUUUUCUCA	chr11:80208900-80209151(+)$1	251	177	199	15.3241
AGGGGGCACUGGGUAGCCCACA	chr3:88991900-88992124(+)$1	224	197	219	15.2175
CAAUGUGCAUAUCAAUACACGG	chr2:49404120-49404339(+)$1	219	38	60	14.6594
AGCUGGUAAACGAGAACCUCUU	chr13:69877557-69877786(-)$1	229	49	71	14.7788
CUGGGAAAGACAACCUUCUCAA	chr9:61263310-61263535(+)$1	225	76	98	12.9119
GACAGCAAGCAACCAUGCCGUU	chr6:148791333-148791556(-)$1	223	72	94	14.4919
AGCCUUGACAACCUACGCGGCU	chr18:9214217-9214439(+)$1	222	122	144	14.6454
CUGCAUCCUAACUUUGGUGGAG	chr7:133700611-133700839(-)$1	228	76	98	14.7697
GCUGGGAUGACAUCUUCACCAG	chr16:33497196-33497438(+)$1	242	183	205	12.9747
GCGGUGGCGACCAAACGGGUGU	chr9:62658992-62659253(-)$1	261	102	124	14.3480
GAGCCUGCUCCAGCACAGGCCU	chr6:128315649-128315880(+)$1	231	190	212	14.0089
CCUUUAGGUUGAGGGCAAAGGA	chr12:112777960-112778181(+)$1	221	44	66	14.8989
GACUAUGACAUGGAACAUAGCA	chr1:179377981-179378217(+)$1	236	116	138	14.4791
CAGUUUUUAUUUGUUAAAAUGG	chr2:34678276-34678538(-)$1	262	162	184	15.1608
CUUUUUGACCGUCACCAUUAAG	chr11:118899932-118900164(-)$1	232	110	132	14.1401
CAGGCUCUCCAGGAUGAGCUGC	chr6:119747207-119747429(-)$1	222	106	128	14.9944
GUCAUCCGUUUGCAAGGUCUCC	chr2:155923912-155924165(-)$1	253	88	110	14.0542
GUUGUAAUAAGAAGUUUGCUCA	chr12:110053592-110053830(+)$1	238	193	215	12.8010
GCGAAGUGCUGAUGAACCUGCU	chr19:29038845-29039071(+)$1	226	123	145	14.6157
CGGGCCGAACCACUGCGGACCC	chr6:71389982-71390222(-)$1	240	31	53	15.2004
AGGAAAUACCCCUCCAUUUCUU	chr3:16104001-16104231(+)$1	230	24	46	15.1346
GUGACUGGGACAAGGUAGUUAU	chr11:35591182-35591407(+)$1	225	126	148	14.4645
AUAAUGCCAAUAUCAGCAUUGC	chr9:62645330-62645573(-)$1	243	217	239	13.7386
UCUGUCGCUGGUCCCCGACUGA	chr9:106073576-106073808(+)$1	232	178	200	14.7697
CCACGGACUAGUACCUCGGUGG	chr9:74737218-74737446(+)$1	228	198	220	13.8165
UGAAAGUCACAAAAAACUUUUC	chr6:28193014-28193239(-)$1	225	94	116	14.5775
UUCAAGCGGAGACAAGCAACUG	chr4:81942505-81942730(-)$1	225	122	144	14.8476
CUCGAAGCGCUUCUUCUUCGAC	chr11:6375064-6375301(-)$1	237	131	153	14.6457
CUUGCGGCUAUGGCACCGGCAA	chr3:123994935-123995161(+)$1	226	33	55	14.8527
CCGGGUGGCCAACGAUGCCCGA	chr5:108698571-108698803(+)$1	232	123	145	13.7844
CAUCUCGCCCUUUUCUGAGACC	chr15:79659014-79659250(-)$1	236	42	64	15.1221
CCCGAAGAUCGACUCCCUCCGC	chr2:102291372-102291627(-)$1	255	5	27	13.3420
GGACCCCUGAACUUUGGGCCUC	chr2:153057193-153057430(-)$1	237	107	129	14.7788
UGAUCCCAGAGAACGGggauga	chr11:24064073-24064311(+)$1	238	17	39	15.3662
UCGUUUCCGAAGGCUGAAACAA	chr17:35292810-35293038(-)$1	228	170	192	14.9066
UGCUUGGAAUAUGACCCAACUU	chr12:102296678-102296901(-)$1	223	119	141	14.9178
AUGUGCUUAGACUAUGGCGCAA	chr19:37294797-37295018(+)$1	221	116	138	14.5255
CAGCACCAAACCCAGGGCGCUC	chr10:41916607-41916843(-)$1	236	123	145	14.5245
AUACAGUUUUCCUUUACUCAGU	chr11:87862968-87863229(+)$1	261	176	198	14.7784
UAUUCGAAGAAGCACUGGAAAA	chr17:84174910-84175136(+)$1	226	141	163	14.1985
CCGCGAGGAGAGCGGCGCGCGG	chr6:86475650-86475881(-)$1	231	88	110	12.7530
GCUCUUGUCCGAUUUCGGGAGC	chr7:88008181-88008408(+)$1	227	195	217	14.7202
GAGGACUACAAGGUGAGUUCUG	chr13:54687080-54687306(-)$1	226	114	136	14.7213
UUGCGUCUACACAAUGAUAUGC	chr12:77488062-77488287(+)$1	225	26	48	14.6106
GGUUAUCAUAACGCAGCUAAUA	chr3:95568496-95568721(-)$1	225	27	49	14.4715
UGGCGUGUAAAUAUUCAAUGAA	chr4:108010965-108011202(+)$1	237	23	45	14.5008
UAAACAAUUUUAUUUUUGUCUU	chr2:105524963-105525186(+)$1	223	14	36	14.0089
GAGAACGAGACUAUCCGUUCUA	chr3:107134974-107135204(-)$1	230	188	210	12.9119
CCCCAACAAGAGGUCGAGGGCG	chr9:88351384-88351616(-)$1	232	90	112	13.2605
CGAGGUUUUUGAGACGGCCACG	chr12:8505902-8506123(-)$1	221	188	210	14.7694
CACAGAAGAAAACAUUUUUGUA	chr12:77487764-77487987(+)$1	223	183	205	14.7213
CGCUGGAGAUCUCUGUUCAGUC	chr16:91656303-91656572(+)$1	269	241	263	12.9119
AAGUGCUGGAAACGGGGCACCA	chr6:38768572-38768798(-)$1	226	109	131	15.6062
CUUGGUACACCGGAUUACCAUU	chrX:91882646-91882871(+)$1	225	177	199	13.0594
UGUGCCCUCUGUCUUGGGCCUG	chr6:113397251-113397479(+)$1	228	156	178	14.4800
UUUGCUCAGACCUCAGAGUAAA	chr7:138054396-138054644(+)$1	248	170	192	14.5024
GUGGAAAAAUGAGUGUUUCCAA	chr19:41633391-41633622(+)$1	231	164	186	15.1409
GUUUUUGAAAUUUAACACCAUC	chr15:53176077-53176324(-)$1	247	152	174	14.5138

#DB
((.((((........)))).))	chr7:125355930-125356177(-)$1	1	138	160	14.2718
.((((((........)))))).	chr2:72808370-72808621(-)$1	1	153	175	14.0060
((((.((........)).))..	chr3:9264661-9264908(+)$1	1	66	88	12.7210
(((.(((........)))))))	chr7:31371791-31372050(-)$1	1	139	161	14.0609
(.(((((........)))))))	chr11:98064596-98064857(+)$1	1	168	190	14.8547
..(((((........))))).)	chr1:75312103-75312325(-)$1	1	115	137	15.1932
(((((((........)))))))	chr10:36716792-36717021(+)$1	1	180	202	14.7202
.((((((........).)))))	chrX:54640325-54640594(-)$1	1	135	157	14.9015
..(((((........)))))))	chr2:34678228-34678455(-)$1	1	79	101	15.1608
(.(((((........))))).)	chr11:80208900-80209151(+)$1	1	177	199	15.3241
...((((........))))...	chr3:88991900-88992124(+)$1	1	197	219	15.2175
(..((((........))))..)	chr2:49404120-49404339(+)$1	1	38	60	14.6594
((..(((........)))..))	chr13:69877557-69877786(-)$1	1	49	71	14.7788
.((((((........)))))).	chr9:61263310-61263535(+)$1	1	76	98	12.9119
(((.(((........))).).)	chr6:148791333-148791556(-)$1	1	72	94	14.4919
((((.((........)).))))	chr18:9214217-9214439(+)$1	1	122	144	14.6454
((.((((........)))).))	chr7:133700611-133700839(-)$1	1	76	98	14.7697
.((((((........)).))))	chr16:33497196-33497438(+)$1	1	183	205	12.9747
(((.(.(........).).)))	chr9:62658992-62659253(-)$1	1	102	124	14.3480
(((((((........)))).))	chr6:128315649-128315880(+)$1	1	190	212	14.0089
(((((.(........)))))))	chr12:112777960-112778181(+)$1	1	44	66	14.8989
(.(((((........)))))))	chr1:179377981-179378217(+)$1	1	116	138	14.4791
..(((((........)))))))	chr2:34678276-34678538(-)$1	1	162	184	15.1608
(((..((........))..)))	chr11:118899932-118900164(-)$1	1	110	132	14.1401
(.(((((........)))))..	chr6:119747207-119747429(-)$1	1	106	128	14.9944
(....((........))....)	chr2:155923912-155924165(-)$1	1	88	110	14.0542
)).((((........))))(((	chr12:110053592-110053830(+)$1	1	193	215	12.8010
(((..((........)).))).	chr19:29038845-29039071(+)$1	1	123	145	14.6157
(((((((........)))...)	chr6:71389982-71390222(-)$1	1	31	53	15.2004
(((((((........)))))))	chr3:16104001-16104231(+)$1	1	24	46	15.1346
.((((((........)))))))	chr11:35591182-35591407(+)$1	1	126	148	14.4645
..(((((........)))))))	chr9:62645330-62645573(-)$1	1	217	239	13.7386
((.((((........)))).))	chr9:106073576-106073808(+)$1	1	178	200	14.7697
((((.((........)).))))	chr9:74737218-74737446(+)$1	1	198	220	13.8165
.((((((........)))))).	chr6:28193014-28193239(-)$1	1	94	116	14.5775
((((.((........))...))	chr4:81942505-81942730(-)$1	1	122	144	14.8476
(((((((........)))))).	chr11:6375064-6375301(-)$1	1	131	153	14.6457
(((((((........)).))))	chr3:123994935-123995161(+)$1	1	33	55	14.8527
)((((((........)))))).	chr5:108698571-108698803(+)$1	1	123	145	13.7844
..(((((........)))))..	chr15:79659014-79659250(-)$1	1	42	64	15.1221
(..((.(........).)).))	chr2:102291372-102291627(-)$1	1	5	27	13.3420
((..(((........)))..))	chr2:153057193-153057430(-)$1	1	107	129	14.7788
(.(((((........))))).)	chr11:24064073-24064311(+)$1	1	17	39	15.3662
(.(((((........))))).)	chr17:35292810-35293038(-)$1	1	170	192	14.9066
((.((((........))))...	chr12:102296678-102296901(-)$1	1	119	141	14.9178
.((((((........)))))).	chr19:37294797-37295018(+)$1	1	116	138	14.5255
.(((.((........)).))).	chr10:41916607-41916843(-)$1	1	123	145	14.5245
((..(((........)))..))	chr11:87862968-87863229(+)$1	1	176	198	14.7784
(((((.(........).))...	chr17:84174910-84175136(+)$1	1	141	163	14.1985
(((((.(........).)))))	chr6:86475650-86475881(-)$1	1	88	110	12.7530
(((((((........)))))))	chr7:88008181-88008408(+)$1	1	195	217	14.7202
.((((((........)))))).	chr13:54687080-54687306(-)$1	1	114	136	14.7213
.((((((........)))..))	chr12:77488062-77488287(+)$1	1	26	48	14.6106
.((((.(........).)))).	chr3:95568496-95568721(-)$1	1	27	49	14.4715
(....((........))....)	chr4:108010965-108011202(+)$1	1	23	45	14.5008
(((((((........)))).))	chr2:105524963-105525186(+)$1	1	14	36	14.0089
.((((((........)))))).	chr3:107134974-107135204(-)$1	1	188	210	12.9119
((((..(........)..)).)	chr9:88351384-88351616(-)$1	1	90	112	13.2605
((.((((........)))).))	chr12:8505902-8506123(-)$1	1	188	210	14.7694
.((((((........)))))).	chr12:77487764-77487987(+)$1	1	183	205	14.7213
.((((((........)))))).	chr16:91656303-91656572(+)$1	1	241	263	12.9119
(.(((((........)))))..	chr6:38768572-38768798(-)$1	1	109	131	15.6062
))(((((........)))))..	chrX:91882646-91882871(+)$1	1	177	199	13.0594
.(.((((........)))))))	chr6:113397251-113397479(+)$1	1	156	178	14.4800
(((((((........)))))).	chr7:138054396-138054644(+)$1	1	170	192	14.5024
(((((((........)))))..	chr19:41633391-41633622(+)$1	1	164	186	15.1409
(....((........))....)	chr15:53176077-53176324(-)$1	1	152	174	14.5138

#PSSM
c : 0.19	d : 0.14	g : 0.13	! : 0.07	" : 0.05	: : 0.05	b : 0.05	[ : 0.05	e : 0.04	i : 0.04	$ : 0.02	= : 0.02	f : 0.01	# : 0.01	& : 0.01	h : 0.01	
f : 0.17	d : 0.14	c : 0.13	g : 0.10	[ : 0.10	# : 0.05	e : 0.05	! : 0.05	" : 0.02	i : 0.02	= : 0.02	a : 0.02	& : 0.01	h : 0.01	
e : 0.23	f : 0.17	[ : 0.08	d : 0.08	! : 0.07	c : 0.07	g : 0.05	# : 0.04	b : 0.02	i : 0.02	= : 0.02	" : 0.01	a : 0.01	: : 0.01	h : 0.01	
e : 0.22	d : 0.20	f : 0.17	! : 0.07	b : 0.05	g : 0.05	[ : 0.04	# : 0.04	i : 0.02	= : 0.02	c : 0.02	h : 0.01	
e : 0.22	d : 0.19	f : 0.17	c : 0.10	[ : 0.07	! : 0.04	# : 0.04	g : 0.02	= : 0.02	b : 0.02	a : 0.01	i : 0.01	h : 0.01	
e : 0.22	f : 0.17	b : 0.17	d : 0.16	c : 0.10	[ : 0.08	g : 0.02	= : 0.01	! : 0.01	
e : 0.20	f : 0.17	b : 0.17	d : 0.16	a : 0.11	c : 0.10	g : 0.02	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
e : 0.20	f : 0.17	b : 0.17	d : 0.16	a : 0.11	c : 0.10	g : 0.02	= : 0.01	
e : 0.20	f : 0.17	b : 0.17	d : 0.16	c : 0.10	] : 0.08	g : 0.02	i : 0.01	= : 0.01	2 : 0.01	
e : 0.22	d : 0.17	f : 0.17	] : 0.10	c : 0.10	4 : 0.04	g : 0.02	2 : 0.02	b : 0.02	a : 0.01	i : 0.01	= : 0.01	3 : 0.01	h : 0.01	
d : 0.22	e : 0.22	f : 0.17	2 : 0.07	b : 0.05	g : 0.04	4 : 0.04	] : 0.02	c : 0.02	3 : 0.02	= : 0.02	i : 0.01	h : 0.01	
e : 0.23	f : 0.17	] : 0.10	d : 0.07	3 : 0.07	2 : 0.07	g : 0.04	c : 0.04	4 : 0.04	b : 0.02	a : 0.02	= : 0.02	i : 0.01	h : 0.01	
f : 0.19	d : 0.11	c : 0.11	] : 0.08	e : 0.08	3 : 0.08	g : 0.07	2 : 0.04	4 : 0.04	i : 0.02	b : 0.02	= : 0.02	6 : 0.01	h : 0.01	: : 0.01	
c : 0.13	d : 0.11	e : 0.10	g : 0.10	3 : 0.07	: : 0.07	] : 0.07	b : 0.05	2 : 0.05	i : 0.04	f : 0.02	= : 0.02	4 : 0.02	7 : 0.01	6 : 0.01	h : 0.01	a : 0.01	

#score	965.1248255672649
#seq	67
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_UTR_m1_run2.txt

#BEAR
eee####a####eeeeerrrrrrrrreeeee22a4444e	chr1:180259287-180259517(-)$1	230	14	53	11.7200
bbdddd"""eeeee!!aooooooa22eeeee333dddd]	chr3:30835160-30835387(-)$1	227	40	79	13.0896
hhhhh####ccc[ddddmmmmdddd333ccc4444hhhh	chr10:39231452-39231677(+)$1	225	70	109	11.9097
%%ggggggg####ddddoooooodddd22gggggggeee	chr9:45776792-45777034(-)$1	242	166	205	13.5103
[ccc"""bbiiiiiiiiimmmmiiiiiiiii]bb22ccc	chr15:102840176-102840396(+)$1	220	151	190	12.2635
eeee!!===========mmmm===========22eeeee	chr11:77523318-77523545(+)$1	227	52	91	13.1017
::dddd[dddd!!ddddoooooodddd]dddd]ddddgg	chr15:102814749-102814971(+)$1	222	97	136	10.8881
!ccc!!============nnnnn============22cc	chr19:60837882-60838105(-)$1	223	132	171	14.6382
eeee[ffffff"""ddddnnnnndddd4444ffffff]e	chr11:77523218-77523456(+)$1	238	52	91	11.2168
[ccc####ffffffooooooffffff4444ccc22ccc]	chr2:34678276-34678538(-)$1	262	93	132	11.3028
=======!!eeeee[bboooooobb]eeeee]=======	chr9:105299018-105299248(+)$1	230	83	122	14.9224
iiii####dddd[cccmmmmccc333dddd4444iiiii	chr2:92200450-92200681(+)$1	231	76	115	11.0335
====[ggggggg####bbmmmmbb22ggggggg333===	chr6:72383154-72383385(-)$1	231	84	123	12.1073
b[ffffffccca[cccooooooccc]a]ccc22ffffff	chr11:74537432-74537659(-)$1	227	143	182	12.5073
!eeeee$$$$$a[ddddoooooodddda22eeeee22ff	chr5:135097247-135097472(-)$1	225	125	164	13.0925
ccc[ccc####ffffffooooooffffff4444ccc22c	chr2:34678228-34678455(-)$1	227	7	46	13.2412
cc####ccc[bb[a[eeeeeooooooeeeee]a]bb]cc	chr16:20692458-20692689(+)$1	231	162	201	10.9235
ffffccc[==========nnnnn==========333ccc	chr19:14523800-14524028(-)$1	228	169	208	13.8768
:==========####bbnnnnnbb4444==========:	chr14:61985823-61986045(-)$1	222	111	150	11.8796
gggggg!!dddd!!eeeeellleeeee]dddd22ggggg	chr10:117252338-117252597(-)$1	259	209	248	11.7661
dddd!!eeeee!!a!!cccmmmmccc22a22eeeee333	chr2:50987731-50987960(-)$1	229	91	130	10.3803
dddd!!bb[ccc####bboooooobb4444ccc333bb2	chr2:50987820-50988056(-)$1	236	183	222	13.2171
eeeee!!bbccc[ddddoooooodddd]ccc22bb22ee	chr4:133308767-133308990(-)$1	223	32	71	14.0374
:::ccc"""eeeeecccooooooccc]eeeee4444ccc	chr14:8922918-8923139(+)$1	221	101	140	11.8512
""bb"""bb[ccc[eeeeellleeeee]cccbb]bb]dd	chr7:138054396-138054644(+)$1	248	117	156	10.9776
ggg%%%%%%bb!!ddddooooooddddbb4444gggggg	chr1:129699938-129700197(+)$1	259	184	223	11.7452
e!!===========!!cccmmmmccc22===========	chr12:60173823-60174063(+)$1	240	136	175	13.6201
gggggggdddd[a[ddddnnnnndddd333a]dddd]gg	chr13:48976043-48976269(-)$1	226	44	83	11.9271
gggggggg!!a!!eeeeennnnneeeee4444a22gggg	chr15:98663620-98663859(-)$1	239	37	76	13.4771
"""eeeee"""ffffffooooooffffffeeeee]ccc2	chr8:87550692-87550917(+)$1	225	120	159	12.3134
eeeee[bb####eeeeeooooooeeeeebb]eeeeebb]	chr11:86547177-86547399(-)$1	222	160	199	12.4083
=====$$$$$bbfffffflllffffff]bb=========	chr11:102152633-102152868(-)$1	235	31	70	11.3990
:ggggggg[ccc[ddddmmmmdddd4444ccc]gggggg	chr8:109410787-109411017(-)$1	230	5	44	11.4478
iiiiiiiii!!bb!!bboooooobb333bb22iiiiiii	chr7:97594529-97594753(+)$1	224	102	141	14.1701
==========gggggggoooooogggggggccc[ccc[e	chr17:36397572-36397800(-)$1	228	108	147	14.2852
eeeee"""iiiiiiiiillliiiiiiiii333eeeee22	chr5:48695479-48695710(+)$1	231	112	151	11.6280
===="""a[ccc[ddddoooooodddd]ccc]a]=====	chr5:34345489-34345720(+)$1	231	169	208	17.6758
a####ggggggg[eeeeerrrrrrrrreeeeeggggggg	chr2:164860107-164860335(-)$1	228	53	92	10.6796
"a"""ggggggg!!ddddnnnnndddd22ggggggg22a	chr4:151677180-151677401(+)$1	221	19	58	12.5089
=========eeeee[ddddmmmmdddd]eeeee]=====	chr11:77523452-77523699(+)$1	247	67	106	12.4270
#ccc[ddddbb"""cccooooooccc333bb]ddddccc	chr3:68819996-68820245(+)$1	249	135	174	13.6670
d[bb[a"""cccaddddnnnnndddd22a]ccc]a]bb]	chr5:136386763-136387006(-)$1	243	133	172	12.0925
fff[a[bb[ccc[cccoooooocccccc]bb]a333fff	chr5:100464605-100464847(-)$1	242	184	223	13.9190
ffff"""eeeee[eeeeemmmmeeeee]eeeee22ffff	chr16:5055089-5055311(+)$1	222	162	201	11.4649
ffff!!ccc[bb[ddddoooooodddd]bbccc22ffff	chr1:17087724-17087945(-)$1	221	17	56	14.4254
gggggggggggg"""ddddmmmmdddd]gggggggdddd	chr6:72383044-72383290(-)$1	246	49	88	11.5011
[dddd####bb[ccccccooooooccc]ccc]bb22ddd	chr4:123413438-123413667(-)$1	229	128	167	13.1286
fffff!!eeeee"""bboooooobb]eeeee]ffffff]	chr3:51276644-51276866(+)$1	222	74	113	12.7385
c[bb!!ccc!!ffffffooooooffffffccc22bb]cc	chr1:193399303-193399531(-)$1	228	114	153	13.1092
##cccddddgggggggaooooooa]ggggggg333dddd	chr2:29922110-29922346(+)$1	236	29	68	13.4541
[ccc!!bb[ccc[a[ammmmaacccbb22ccc4444ccc	chr9:88351220-88351457(-)$1	237	173	212	11.8172
==========:ffffffooooooffffff::iiiiiiii	chr9:110378898-110379138(-)$1	240	84	123	11.6809
eee[bb[ccc"""eeeeemmmmeeeee]cccbb22eeee	chr11:96838849-96839089(-)$1	240	58	97	10.8252
e[cccffffff"""cccooooooccc]ffffff4444cc	chr8:98012165-98012394(-)$1	229	35	74	13.7845

#otherMatches

#Seq PSSM
UCACCAAGGAUAUUAUUGAAUACCCAAAUAAAACGAACU	chr1:180259287-180259517(-)$1	230	14	53	11.7200
GUGCAGAAUGCUUUGGUGUCAGAAGAGGAGCUACCUGCU	chr3:30835160-30835387(-)$1	227	40	79	13.0896
AGCCUCCUUUCUCUUCCAUCAGGAGCUUGGAUAAUGGGC	chr10:39231452-39231677(+)$1	225	70	109	11.9097
CAGGAGGGGGCUAUGCAAAGAUCUGCAAACCCCUCCAUG	chr9:45776792-45777034(-)$1	242	166	205	13.5103
ACCUCAAUCGCUCAGGAUUUUAGUUCUGAGCAGGGCAGG	chr15:102840176-102840396(+)$1	220	151	190	12.2635
aauauauauauauauauacauauauauauauaGUUAUUU	chr11:77523318-77523545(+)$1	227	52	91	13.1017
CUGAAAUAAAUGACACACACAAAUGUGAAUUUUUUUCCU	chr15:102814749-102814971(+)$1	222	97	136	10.8881
GAUGGAGUCAAACUUGUGGCUUACAUAGGUUUGAUCACA	chr19:60837882-60838105(-)$1	223	132	171	14.6382
GCAUUAGAGCCACCGUUCAUGUGGGACACAAGGCUUUUA	chr11:77523218-77523456(+)$1	238	52	91	11.2168
CAGGCAUCUCUCCAAUAACCUGGAGACUCUCCUCAAGCG	chr2:34678276-34678538(-)$1	262	93	132	11.3028
UCAUAUUUGUCCGUAUGUUGUAUUAGAUGGAGGAUGUGA	chr9:105299018-105299248(+)$1	230	83	122	14.9224
CCCUCCUCGCAGAGCUGCACAGCGAACUGUAACCAGGGG	chr2:92200450-92200681(+)$1	231	76	115	11.0335
UGAACAGCUGGUGUAGCUACAGAGAAACCAGCUUCCUUC	chr6:72383154-72383385(-)$1	231	84	123	12.1073
GUGGUGCAGCGCUCCGGUAAGGCGGCGACGCUCUGCGCC	chr11:74537432-74537659(-)$1	227	143	182	12.5073
AGCUGGAGCAAGACCACGGCCUGGUGGCAGCCGGUCGCC	chr5:135097247-135097472(-)$1	225	125	164	13.0925
GCUCAGGCAUCUCUCCAAUAACCUGGAGACUCUCCUCAA	chr2:34678228-34678455(-)$1	227	7	46	13.2412
GUGCGAUGUGUCUUGAGCUAAUAAAGUGGCUGAUGAGGC	chr16:20692458-20692689(+)$1	231	162	201	10.9235
AUGCUCCACCCCUCCCUUUUGGUGAGGGAGGGGAAAGGA	chr19:14523800-14524028(-)$1	228	169	208	13.8768
CAAGAAACUUGGUUGUUGAUUAAAAAGAUAAGUUUUUUA	chr14:61985823-61986045(-)$1	222	111	150	11.8796
CAAGGUCAUUAUCAUUGUAUUAUACAAAAUAAGCGCUUU	chr10:117252338-117252597(-)$1	259	209	248	11.7661
CAGCAGUUGCUACGGACUUACGAAAGGACAAAGCGAAGA	chr2:50987731-50987960(-)$1	229	91	130	10.3803
CUCUCAGCAGUUGCUACGGACUUACGAAAGGACAAAGCG	chr2:50987820-50988056(-)$1	236	183	222	13.2171
GCGGGGGCUUGGAGCCCUACGCCGGGCCCCAGCAGAACU	chr4:133308767-133308990(-)$1	223	32	71	14.0374
UAUGGAAGGCUGGGUUAAAGUUAUGGUCCCGGAAGCUCC	chr14:8922918-8923139(+)$1	221	101	140	11.8512
AAGGUCCAGACUGUCUCUCCAAGAGAGCCAGCUUCCAAA	chr7:138054396-138054644(+)$1	248	117	156	10.9776
GAAUGAAUAUGUAACCUUUGUUUAGGUCAACUUUUCCUU	chr1:129699938-129700197(+)$1	259	184	223	11.7452
UUUGCAUAAUUUUGUAAGAGUUAUUUAUCAAAAUUAUGU	chr12:60173823-60174063(+)$1	240	136	175	13.6201
AGACAGCGCCUGCCGCAGGGAGGCUGCUCUGGAGGCAGC	chr13:48976043-48976269(-)$1	226	44	83	11.9271
AGUCACCAAACUGCUGCUGGUCUGGUGGGAAUGGGUGGU	chr15:98663620-98663859(-)$1	239	37	76	13.4771
AGACGGGCGGAGCCUCCGGGUCGGGAGGCGCCCGGCCCG	chr8:87550692-87550917(+)$1	225	120	159	12.3134
GCUCUUGUUACGGAUAAUGCAGUUUAUCACUGGAGUAUG	chr11:86547177-86547399(-)$1	222	160	199	12.4083
GAUCCAAUUAUGUGCCCCUGGGGGGUGUCAGGAUCCUCU	chr11:102152633-102152868(-)$1	235	31	70	11.3990
UGGUGGUGUAGGUGUAGGACACUACUCAUCCUUCACCGC	chr8:109410787-109411017(-)$1	230	5	44	11.4478
UUUAUUCAUCUCUAACAUGAUAUUGGAAAGUAAUGGAUG	chr7:97594529-97594753(+)$1	224	102	141	14.1701
GGGAGGUGGAGGUGGGUGACAAGACCCACUGGGCAGUAG	chr17:36397572-36397800(-)$1	228	108	147	14.2852
CAGACUUAUUUUUAUUAUGAUAAUAAAGACUUGUCUGCA	chr5:48695479-48695710(+)$1	231	112	151	11.6280
UUAAUCUGGAUUAUACAGACAGAUGUAAAGUGUUUUAGC	chr5:34345489-34345720(+)$1	231	169	208	17.6758
GUGGCGCCUUUGUCCUACGGCGGGCAGGUGggcagaggc	chr2:164860107-164860335(-)$1	228	53	92	10.6796
ACAGAAGAGGAGGAGAUCUCACUGAUUCACUUUUUUGGG	chr4:151677180-151677401(+)$1	221	19	58	12.5089
UUGUUAGUUUUUGUUUUUAAGUGUGAAUGCAAGUGAUUA	chr11:77523452-77523699(+)$1	247	67	106	12.4270
GUCUUGUGUCGGAGAGUUGAAAUAUUAAAUGAACACAGA	chr3:68819996-68820245(+)$1	249	135	174	13.6670
AACAACUAAGGCCCCAGGUGGACUGGCAGCGCCCGCUGA	chr5:136386763-136387006(-)$1	243	133	172	12.0925
CUGUCCUGUGGUAUGGUCUCUUCCAACUUCAUGUACCAG	chr5:100464605-100464847(-)$1	242	184	223	13.9190
CUUUGAAUCCUGCAUUUUUGAAGAAGUCCAGGAAAGAGG	chr16:5055089-5055311(+)$1	222	162	201	11.4649
CUCUCGCGCgcggcgcuggccggggcggcggcgaaggag	chr1:17087724-17087945(-)$1	221	17	56	14.4254
GGAGGAGGAAAUCCCUUCAUACUUGAACAUUUUCUAAUU	chr6:72383044-72383290(-)$1	246	49	88	11.5011
GAAUUUGAAAUGUAAGUUAGGAUGGACAUUAGAUGUGAU	chr4:123413438-123413667(-)$1	229	128	167	13.1286
CUGAACAUCAUUAAACAAGCAAAUGGAAUGACUUUGGAC	chr3:51276644-51276866(+)$1	222	74	113	12.7385
UGGCGGCCGGGGCUCUUAGUGGCGGGAGUUGGAGGCGAA	chr1:193399303-193399531(-)$1	228	114	153	13.1092
AACGCGCCCGGGCCUGCCUCCGCGUCAGGCCCCGCGGGC	chr2:29922110-29922346(+)$1	236	29	68	13.4541
GGUUAUUCACAGAGAGGAGGCCCUGGAUCAGCAAGAGGC	chr9:88351220-88351457(-)$1	237	173	212	11.8172
CUCCGUGUCGGAGUUGCCUAGUCGCGGCUACGGCGUCAU	chr9:110378898-110379138(-)$1	240	84	123	11.6809
GCGGGCUCCGGGAUUGGCGGGUGCUAGGCGGGCGGUGUC	chr11:96838849-96839089(-)$1	240	58	97	10.8252
gucccgcccgccaugcccggcccggccgcgGGCAGUCGG	chr8:98012165-98012394(-)$1	229	35	74	13.7845

#DB
(((....(....(((((.........)))))..)....)	chr1:180259287-180259517(-)$1	1	14	53	11.7200
((((((...(((((..(......)..)))))...)))).	chr3:30835160-30835387(-)$1	1	40	79	13.0896
(((((....(((.((((....))))...)))....))))	chr10:39231452-39231677(+)$1	1	70	109	11.9097
..(((((((....((((......))))..))))))))))	chr9:45776792-45777034(-)$1	1	166	205	13.5103
.(((...(((((((((((....))))))))).))..)))	chr15:102840176-102840396(+)$1	1	151	190	12.2635
((((..(((((((((((....)))))))))))..)))))	chr11:77523318-77523545(+)$1	1	52	91	13.1017
..((((.((((..((((......)))).)))).))))((	chr15:102814749-102814971(+)$1	1	97	136	10.8881
.(((..((((((((((((.....))))))))))))..))	chr19:60837882-60838105(-)$1	1	132	171	14.6382
((((.((((((...((((.....))))....)))))).)	chr11:77523218-77523456(+)$1	1	52	91	11.2168
.(((....((((((......))))))....)))..))).	chr2:34678276-34678538(-)$1	1	93	132	11.3028
(((((((..(((((.((......)).))))).)))))))	chr9:105299018-105299248(+)$1	1	83	122	14.9224
((((....((((.(((....)))...))))....)))))	chr2:92200450-92200681(+)$1	1	76	115	11.0335
((((.(((((((....((....))..)))))))...)))	chr6:72383154-72383385(-)$1	1	84	123	12.1073
(.((((((((((.(((......))).).)))..))))))	chr11:74537432-74537659(-)$1	1	143	182	12.5073
.(((((.....(.((((......)))))..)))))..))	chr5:135097247-135097472(-)$1	1	125	164	13.0925
(((.(((....((((((......))))))....)))..)	chr2:34678228-34678455(-)$1	1	7	46	13.2412
((....(((.((.(.(((((......))))).).)).))	chr16:20692458-20692689(+)$1	1	162	201	10.9235
))))(((.((((((((((.....))))))))))...)))	chr19:14523800-14524028(-)$1	1	169	208	13.8768
.((((((((((....((.....))....)))))))))).	chr14:61985823-61986045(-)$1	1	111	150	11.8796
((((((..((((..(((((...))))).))))..)))))	chr10:117252338-117252597(-)$1	1	209	248	11.7661
((((..(((((..(..(((....)))..)..)))))...	chr2:50987731-50987960(-)$1	1	91	130	10.3803
((((..((.(((....((......))....)))...)).	chr2:50987820-50988056(-)$1	1	183	222	13.2171
(((((..(((((.((((......)))).)))..))..))	chr4:133308767-133308990(-)$1	1	32	71	14.0374
...(((...((((((((......))).)))))....)))	chr14:8922918-8923139(+)$1	1	101	140	11.8512
..((...((.(((.(((((...))))).))))).)).))	chr7:138054396-138054644(+)$1	1	117	156	10.9776
(((......((..((((......))))))....))))))	chr1:129699938-129700197(+)$1	1	184	223	11.7452
(..(((((((((((..(((....)))..)))))))))))	chr12:60173823-60174063(+)$1	1	136	175	13.6201
(((((((((((.(.((((.....))))...).)))).))	chr13:48976043-48976269(-)$1	1	44	83	11.9271
((((((((..(..(((((.....)))))....)..))))	chr15:98663620-98663859(-)$1	1	37	76	13.4771
...(((((...((((((......))))))))))).))).	chr8:87550692-87550917(+)$1	1	120	159	12.3134
(((((.((....(((((......))))))).))))))).	chr11:86547177-86547399(-)$1	1	160	199	12.4083
(((((.....((((((((...)))))).)))))))))))	chr11:102152633-102152868(-)$1	1	31	70	11.3990
.(((((((.(((.((((....))))....))).))))))	chr8:109410787-109411017(-)$1	1	5	44	11.4478
(((((((((..((..((......))...))..)))))))	chr7:97594529-97594753(+)$1	1	102	141	14.1701
))))))))))(((((((......)))))))(((.(((.(	chr17:36397572-36397800(-)$1	1	108	147	14.2852
(((((...(((((((((...)))))))))...)))))..	chr5:48695479-48695710(+)$1	1	112	151	11.6280
((((...(.(((.((((......)))).))).).)))))	chr5:34345489-34345720(+)$1	1	169	208	17.6758
(....(((((((.(((((.........))))))))))))	chr2:164860107-164860335(-)$1	1	53	92	10.6796
.(...(((((((..((((.....))))..)))))))..)	chr4:151677180-151677401(+)$1	1	19	58	12.5089
((((((((((((((.((((....)))).))))).)))))	chr11:77523452-77523699(+)$1	1	67	106	12.4270
.(((.((((((...(((......)))...)).)))))))	chr3:68819996-68820245(+)$1	1	135	174	13.6670
(.((.(...((((((((.....))))..).))).).)).	chr5:136386763-136387006(-)$1	1	133	172	12.0925
(((.(.((.(((.(((......)))))).)).)...)))	chr5:100464605-100464847(-)$1	1	184	223	13.9190
((((...(((((.(((((....))))).)))))..))))	chr16:5055089-5055311(+)$1	1	162	201	11.4649
((((..(((.((.((((......)))).)))))..))))	chr1:17087724-17087945(-)$1	1	17	56	14.4254
)))))(((((((...((((....)))).)))))))((((	chr6:72383044-72383290(-)$1	1	49	88	11.5011
.((((....((.((((((......))).))).))..)))	chr4:123413438-123413667(-)$1	1	128	167	13.1286
(((((..(((((...((......)).))))).)))))).	chr3:51276644-51276866(+)$1	1	74	113	12.7385
(.((..(((..((((((......)))))))))..)).))	chr1:193399303-193399531(-)$1	1	114	153	13.1092
..(((((((((((((((......).)))))))...))))	chr2:29922110-29922346(+)$1	1	29	68	13.4541
.(((..((.(((.(.(....)))))))..)))....)))	chr9:88351220-88351457(-)$1	1	173	212	11.8172
)))))))))).((((((......))))))..((((((((	chr9:110378898-110379138(-)$1	1	84	123	11.6809
(((.((.(((...(((((....))))).)))))..))))	chr11:96838849-96839089(-)$1	1	58	97	10.8252
(.(((((((((...(((......))).))))))....))	chr8:98012165-98012394(-)$1	1	35	74	13.7845

#PSSM
e : 0.16	= : 0.12	f : 0.09	g : 0.09	[ : 0.07	: : 0.07	c : 0.05	d : 0.05	" : 0.05	b : 0.03	! : 0.03	i : 0.03	# : 0.03	h : 0.01	% : 0.01	a : 0.01	
e : 0.14	= : 0.14	c : 0.12	g : 0.11	f : 0.09	[ : 0.07	d : 0.05	: : 0.03	i : 0.03	" : 0.03	# : 0.03	b : 0.01	h : 0.01	% : 0.01	! : 0.01	a : 0.01	
e : 0.14	c : 0.14	= : 0.14	g : 0.12	f : 0.11	d : 0.09	b : 0.05	i : 0.03	# : 0.03	" : 0.03	h : 0.01	: : 0.01	! : 0.01	
= : 0.16	c : 0.14	e : 0.12	g : 0.11	d : 0.09	f : 0.09	# : 0.05	[ : 0.05	b : 0.05	i : 0.03	h : 0.01	% : 0.01	" : 0.01	
! : 0.12	= : 0.12	g : 0.11	# : 0.09	" : 0.09	e : 0.09	c : 0.09	[ : 0.07	d : 0.05	f : 0.03	h : 0.01	% : 0.01	i : 0.01	a : 0.01	b : 0.01	
g : 0.16	! : 0.16	# : 0.11	= : 0.11	" : 0.09	d : 0.07	f : 0.05	c : 0.05	e : 0.03	[ : 0.03	% : 0.01	$ : 0.01	i : 0.01	a : 0.01	b : 0.01	
" : 0.14	g : 0.14	= : 0.14	# : 0.09	c : 0.09	b : 0.07	f : 0.05	! : 0.05	[ : 0.03	$ : 0.03	e : 0.03	d : 0.03	% : 0.01	i : 0.01	
g : 0.12	b : 0.12	= : 0.12	# : 0.09	" : 0.07	d : 0.07	c : 0.07	e : 0.07	f : 0.05	a : 0.03	! : 0.03	$ : 0.03	[ : 0.01	% : 0.01	i : 0.01	
= : 0.14	d : 0.11	# : 0.09	g : 0.09	c : 0.09	[ : 0.09	" : 0.07	b : 0.05	f : 0.05	e : 0.05	! : 0.03	$ : 0.03	i : 0.03	% : 0.01	
c : 0.18	e : 0.12	= : 0.12	g : 0.09	# : 0.07	d : 0.07	f : 0.05	[ : 0.05	b : 0.05	! : 0.05	i : 0.03	$ : 0.03	" : 0.01	
c : 0.18	e : 0.12	g : 0.11	b : 0.11	= : 0.09	# : 0.07	d : 0.07	f : 0.05	i : 0.03	" : 0.03	! : 0.03	$ : 0.01	a : 0.01	: : 0.01	
c : 0.16	e : 0.11	g : 0.11	f : 0.09	# : 0.07	= : 0.07	! : 0.07	" : 0.07	b : 0.07	i : 0.03	d : 0.03	a : 0.03	[ : 0.03	
[ : 0.24	e : 0.11	! : 0.11	" : 0.11	f : 0.11	# : 0.07	= : 0.07	i : 0.03	c : 0.03	a : 0.03	g : 0.03	b : 0.01	
e : 0.18	d : 0.18	f : 0.11	" : 0.09	= : 0.07	c : 0.07	# : 0.05	a : 0.05	! : 0.05	i : 0.03	[ : 0.03	g : 0.03	
d : 0.24	e : 0.14	c : 0.12	f : 0.09	! : 0.07	[ : 0.07	= : 0.05	# : 0.05	i : 0.03	g : 0.03	" : 0.03	o : 0.01	
d : 0.27	e : 0.16	c : 0.12	f : 0.09	b : 0.07	! : 0.05	= : 0.05	i : 0.03	# : 0.03	g : 0.03	o : 0.01	a : 0.01	
d : 0.27	e : 0.16	b : 0.11	c : 0.11	f : 0.09	= : 0.05	o : 0.05	a : 0.03	i : 0.03	m : 0.03	g : 0.01	
o : 0.44	e : 0.12	m : 0.09	d : 0.09	c : 0.05	= : 0.03	b : 0.03	n : 0.03	r : 0.01	i : 0.01	f : 0.01	l : 0.01	
o : 0.48	m : 0.16	n : 0.14	e : 0.05	r : 0.03	c : 0.03	l : 0.03	d : 0.03	
o : 0.48	m : 0.24	n : 0.14	l : 0.07	r : 0.03	e : 0.01	
o : 0.48	m : 0.20	n : 0.14	l : 0.05	r : 0.03	f : 0.01	c : 0.01	i : 0.01	a : 0.01	
o : 0.48	m : 0.14	n : 0.14	r : 0.03	d : 0.03	f : 0.03	l : 0.03	= : 0.01	c : 0.01	i : 0.01	a : 0.01	
o : 0.44	n : 0.11	c : 0.07	e : 0.07	m : 0.07	d : 0.05	r : 0.03	i : 0.03	f : 0.03	b : 0.03	= : 0.01	
d : 0.27	c : 0.14	f : 0.11	e : 0.11	b : 0.09	= : 0.05	o : 0.05	r : 0.03	a : 0.03	i : 0.03	3 : 0.01	g : 0.01	
d : 0.27	c : 0.16	f : 0.11	e : 0.11	b : 0.07	= : 0.05	r : 0.03	2 : 0.03	i : 0.03	3 : 0.01	o : 0.01	4 : 0.01	g : 0.01	] : 0.01	
d : 0.24	c : 0.12	f : 0.11	e : 0.11	3 : 0.05	= : 0.05	] : 0.05	r : 0.03	2 : 0.03	i : 0.03	4 : 0.03	b : 0.03	g : 0.03	o : 0.01	
d : 0.24	e : 0.20	f : 0.09	4 : 0.07	3 : 0.05	= : 0.05	g : 0.05	2 : 0.05	i : 0.03	] : 0.03	c : 0.03	a : 0.01	r : 0.01	b : 0.01	
] : 0.24	e : 0.16	2 : 0.11	4 : 0.09	f : 0.09	3 : 0.07	= : 0.05	g : 0.05	i : 0.03	d : 0.01	a : 0.01	b : 0.01	c : 0.01	
e : 0.16	c : 0.12	= : 0.09	4 : 0.09	f : 0.09	b : 0.09	2 : 0.07	g : 0.07	d : 0.05	i : 0.03	a : 0.03	3 : 0.03	] : 0.01	
e : 0.18	c : 0.18	g : 0.11	4 : 0.11	b : 0.11	= : 0.09	d : 0.05	2 : 0.03	3 : 0.03	i : 0.01	] : 0.01	: : 0.01	f : 0.01	
c : 0.27	e : 0.20	= : 0.11	g : 0.09	4 : 0.09	d : 0.03	2 : 0.03	b : 0.03	i : 0.01	a : 0.01	] : 0.01	3 : 0.01	: : 0.01	f : 0.01	
] : 0.16	c : 0.14	e : 0.14	= : 0.11	4 : 0.09	g : 0.09	2 : 0.07	3 : 0.03	d : 0.03	f : 0.03	b : 0.03	i : 0.01	
e : 0.12	2 : 0.11	4 : 0.11	= : 0.11	g : 0.09	c : 0.09	b : 0.07	a : 0.07	f : 0.05	3 : 0.03	] : 0.03	d : 0.03	i : 0.03	
2 : 0.14	3 : 0.11	g : 0.11	4 : 0.09	= : 0.09	e : 0.09	] : 0.09	b : 0.05	d : 0.05	f : 0.05	i : 0.03	a : 0.01	c : 0.01	[ : 0.01	
g : 0.12	2 : 0.12	= : 0.12	4 : 0.09	e : 0.09	3 : 0.09	d : 0.07	b : 0.07	f : 0.05	i : 0.05	c : 0.03	] : 0.01	a : 0.01	
g : 0.12	d : 0.11	= : 0.11	2 : 0.09	e : 0.09	f : 0.09	4 : 0.07	c : 0.07	3 : 0.07	i : 0.05	b : 0.05	h : 0.01	] : 0.01	
c : 0.14	= : 0.12	f : 0.11	d : 0.09	2 : 0.09	g : 0.09	e : 0.07	] : 0.07	i : 0.05	b : 0.05	4 : 0.03	h : 0.01	3 : 0.01	
c : 0.20	g : 0.12	= : 0.12	f : 0.11	d : 0.09	e : 0.07	i : 0.05	2 : 0.05	b : 0.05	4 : 0.01	h : 0.01	] : 0.01	3 : 0.01	[ : 0.01	
c : 0.18	e : 0.12	g : 0.12	= : 0.11	] : 0.09	f : 0.09	d : 0.07	i : 0.05	2 : 0.05	h : 0.01	: : 0.01	3 : 0.01	a : 0.01	

#score	678.7779237486225
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_CDS_m3_run2.txt

#BEAR
ffffffuuuuuuuuuuuuffffff]	chr11:117627444-117627661(-)$1	217	152	177	22.6399
"fffffftttttttttttffffffd	chr11:68801869-68802080(-)$1	211	7	32	22.3456
=======ttttttttttt=======	chr14:21834063-21834279(+)$1	216	143	168	23.6865
"""ddddtttttttttttdddd555	chr10:80356922-80357142(-)$1	220	48	73	19.9710
ddd!!bbtttttttttttbb22ddd	chr8:108361044-108361259(-)$1	215	128	153	21.3046
ddddyyyyyyyyyyyyyyyydddd2	chr7:31267436-31267651(+)$1	215	35	60	20.2060
ee!!ccctttttttttttccceeee	chr11:98831785-98832009(+)$1	224	87	112	23.7281
ee[cccwwwwwwwwwwwwwwccc]e	chr14:31828437-31828650(-)$1	213	27	52	23.0245
iiiiiiiuuuuuuuuuuuuiiiiii	chr3:65751742-65751959(-)$1	217	2	27	23.8852
$$eeeeettttttttttteeeeecc	chr5:115545153-115545370(+)$1	217	177	202	21.9099
:fffffftttttttttttffffff:	chr17:24386169-24386385(-)$1	216	110	135	20.6210
hhhhhhvvvvvvvvvvvvvhhhhhh	chr7:109147348-109147568(+)$1	220	132	157	22.1816
eeedddduuuuuuuuuuuudddd]e	chr18:39583990-39584206(-)$1	216	170	195	22.8743
:fffffftttttttttttffffff:	chr16:18280275-18280499(-)$1	224	86	111	20.6210
b[a[ccctttttttttttccc]abb	chr9:43962262-43962494(-)$1	232	90	115	22.9400
ffffffvvvvvvvvvvvvvffffff	chr5:115698905-115699122(-)$1	217	134	159	22.9331
ee[ddddtttttttttttddddeee	chr17:46569934-46570152(-)$1	218	7	32	22.6343
ddd[cccuuuuuuuuuuuucccddd	chr11:86539775-86539993(-)$1	218	86	111	23.2601
ggggggattttttttttta]ggggg	chr17:36117989-36118211(+)$1	222	21	46	24.2897
=======uuuuuuuuuuuu======	chr4:123060486-123060697(-)$1	211	30	55	24.0527
h"""cccuuuuuuuuuuuuccchhh	chrM:8961-9181(+)$1	220	30	55	23.4957
hhhhhhhttttttttttthhhhhhh	chrM:12473-12697(-)$1	224	196	221	21.0101
ggggggvvvvvvvvvvvvvgggggg	chr13:46770794-46771013(+)$1	219	153	178	24.2430
ggggggvvvvvvvvvvvvvgggggg	chr19:6365581-6365801(+)$1	220	7	32	24.2430
ee[cccwwwwwwwwwwwwwwccc]e	chr9:78405167-78405386(-)$1	219	7	32	23.0245
cccccccuuuuuuuuuuuuccc]cc	chr4:55021867-55022079(+)$1	212	82	107	23.9074
gggggggtttttttttttggggggg	chrM:12306-12529(-)$1	223	28	53	23.4979
:eeeeewwwwwwwwwwwwwweeeee	chrX:98758779-98758996(+)$1	217	63	88	21.0463
:eeeeewwwwwwwwwwwwwweeeee	chr2:103612735-103612946(-)$1	211	1	26	21.0463
eeee[bbvvvvvvvvvvvvvbbeee	chr1:58072306-58072522(+)$1	216	46	71	22.1114
ddddyyyyyyyyyyyyyyyydddd]	chr7:109608772-109608988(+)$1	216	129	154	20.4329
eayyyyyyyyyyyyyyyya]eeeee	chr12:56192156-56192369(+)$1	213	112	137	19.6870
!!ddddvvvvvvvvvvvvvdddd33	chr4:32068416-32068627(+)$1	211	146	171	23.4432
!!dddduuuuuuuuuuuuddddccc	chr1:63591931-63592148(+)$1	217	58	83	22.9343
cc[cccuuuuuuuuuuuucccccc]	chr6:83133183-83133401(+)$1	218	79	104	24.0072
cc[cccvvvvvvvvvvvvvccc]cc	chr5:139721291-139721509(+)$1	218	156	181	24.1821
bccc[bbtttttttttttbb]ccc:	chr7:151649174-151649389(-)$1	215	168	193	21.5778
e[ddddvvvvvvvvvvvvvdddd22	chr4:141045784-141045999(-)$1	215	65	90	22.9912
b!!cccuuuuuuuuuuuucccbb]f	chr7:20323274-20323484(-)$1	210	69	94	23.4154
g[a[cccuuuuuuuuuuuuccca]g	chr9:105974319-105974533(+)$1	214	81	106	24.3601
"""ddddtttttttttttdddd22d	chr11:79926571-79926785(+)$1	214	155	180	22.1529
======wwwwwwwwwwwwww=====	chrX:12693666-12693878(+)$1	212	42	67	22.9996
ggggggguuuuuuuuuuuugggggg	chr11:101387710-101387924(-)$1	214	25	50	23.9443
ggggggvvvvvvvvvvvvvgggggg	chr8:72656387-72656607(+)$1	220	194	219	24.2430
:::cccuuuuuuuuuuuuccceeee	chr10:125432419-125432632(+)$1	213	66	91	20.7261
hhhhhhvvvvvvvvvvvvvhhhhhh	chr11:23254917-23255139(+)$1	222	25	50	22.1816
ggggggguuuuuuuuuuuugggggg	chr17:33797107-33797319(-)$1	212	179	204	23.9443
e[bb[auuuuuuuuuuuua]bbeee	chr2:144080998-144081209(-)$1	211	120	145	22.8366
ffffffwwwwwwwwwwwwwwfffff	chr10:62301216-62301434(-)$1	218	163	188	21.7902
f[bb[bbuuuuuuuuuuuubbbb]f	chr18:78020487-78020698(+)$1	211	51	76	22.0308
e!!cccvvvvvvvvvvvvvccc22e	chr4:44065739-44065958(-)$1	219	134	159	24.0484
ggggggwwwwwwwwwwwwwwggggg	chr11:95611088-95611308(+)$1	220	38	63	23.0178
ffffffyyyyyyyyyyyyyyyyfff	chr6:51413376-51413586(-)$1	210	34	59	20.3592
e[cccbbtttttttttttbb]ccc2	chr4:21669733-21669943(+)$1	210	120	145	22.8014
[fffffftttttttttttffffff]	chr1:63132631-63132841(-)$1	210	35	60	22.6134
""dddduuuuuuuuuuuuddddeee	chr8:28383711-28383931(+)$1	220	153	178	22.7806

#otherMatches

#Seq PSSM
UAGAGUGACUUCCCAUGAACUCUAG	chr11:117627444-117627661(-)$1	217	152	177	22.6399
GGCUGGGUGGGAAGUGAUCCCAGUG	chr11:68801869-68802080(-)$1	211	7	32	22.3456
UGUUGGUACUGCCAAUAAAUCGACA	chr14:21834063-21834279(+)$1	216	143	168	23.6865
ACACAUCUUCUGCUCUAUGAUGCCC	chr10:80356922-80357142(-)$1	220	48	73	19.9710
CAGGGCUUUCGAUUAUGUAGAACUG	chr8:108361044-108361259(-)$1	215	128	153	21.3046
UACCAACUCCAGCCUUCACAGGUAU	chr7:31267436-31267651(+)$1	215	35	60	20.2060
ACCAAGUGCAUCAUUAAGACUGUGG	chr11:98831785-98832009(+)$1	224	87	112	23.7281
GUAGUUAACACUAGUCUUAAAACCA	chr14:31828437-31828650(-)$1	213	27	52	23.0245
UUUUAAUAUGUCCUUUUCCAUUAAA	chr3:65751742-65751959(-)$1	217	2	27	23.8852
CAGCUGCCAACCAGAAAAGCAGUGA	chr5:115545153-115545370(+)$1	217	177	202	21.9099
CCAUCUUGAGUCUCCCAGAAGAUGU	chr17:24386169-24386385(-)$1	216	110	135	20.6210
CUCAGCAGGAAAAGGCAGAGCUGAG	chr7:109147348-109147568(+)$1	220	132	157	22.1816
GUAAUGGAAGCUUAAGGAACUGUCU	chr18:39583990-39584206(-)$1	216	170	195	22.8743
AGGGUCCAUGGAUGAGAAGGACCCA	chr16:18280275-18280499(-)$1	224	86	111	20.6210
UAUGCCAAAACUGCCACCUGGGGAG	chr9:43962262-43962494(-)$1	232	90	115	22.9400
GGAGCCCAUCACUAAGCCAGGCUUC	chr5:115698905-115699122(-)$1	217	134	159	22.9331
GGCAGCCUUGUAAUGUAUGGCUCCU	chr17:46569934-46570152(-)$1	218	7	32	22.6343
caauguccuacaaaauccugacuug	chr11:86539775-86539993(-)$1	218	86	111	23.2601
CGGCUGCAUUUUGAACGGGACAGCC	chr17:36117989-36118211(+)$1	222	21	46	24.2897
GACUAUUAAGGAGGAGACAGAUGGU	chr4:123060486-123060697(-)$1	211	30	55	24.0527
UCCCACUACUUAAUACUUCAGUACU	chrM:8961-9181(+)$1	220	30	55	23.4957
CUACUAUUGUACUUGAGUGUAGUAG	chrM:12473-12697(-)$1	224	196	221	21.0101
CUGUUUUUUCAGCAUAAUCGAACAG	chr13:46770794-46771013(+)$1	219	153	178	24.2430
AGUUUAGUUUUAAUUAUCAUGAACU	chr19:6365581-6365801(+)$1	220	7	32	24.2430
AUUGCCUUAUUUUGGCUGUUGGUUA	chr9:78405167-78405386(-)$1	219	7	32	23.0245
AGCCGAAGUCACCUCAUAAUUCUGG	chr4:55021867-55022079(+)$1	212	82	107	23.9074
CUACUAUUGUACUUGAGUGUAGUAG	chrM:12306-12529(-)$1	223	28	53	23.4979
CAUUGCUAUCUUUUUCUGUUGCAGU	chrX:98758779-98758996(+)$1	217	63	88	21.0463
ACAGCAUCCUCAUCCCUUCCUGCUG	chr2:103612735-103612946(-)$1	211	1	26	21.0463
AUUUAGAUCACCAACCAACUUCAAG	chr1:58072306-58072522(+)$1	216	46	71	22.1114
UUGUCCGAAAUCUGAAUAAAAUAAU	chr7:109608772-109608988(+)$1	216	129	154	20.4329
ACUGAACAAAAGAAAAAUGAUUCAG	chr12:56192156-56192369(+)$1	213	112	137	19.6870
GUCCGAGAGCAUGGAAUGGUCGGUA	chr4:32068416-32068627(+)$1	211	146	171	23.4432
GUUGUAUACCCCCAGAUUUACAAGG	chr1:63591931-63592148(+)$1	217	58	83	22.9343
AAUGUAUUUGUUGUUGUUUGCUUUC	chr6:83133183-83133401(+)$1	218	79	104	24.0072
UCCAUGAAAGUAAAAAAAGCAUUGA	chr5:139721291-139721509(+)$1	218	156	181	24.1821
CAGGAACACAUCAAGUAAGUACCUU	chr7:151649174-151649389(-)$1	215	168	193	21.5778
GCUCUGCCCCAUCCACUCACAGAAA	chr4:141045784-141045999(-)$1	215	65	90	22.9912
UUUGCCACGUUUCCCAACGGUACCC	chr7:20323274-20323484(-)$1	210	69	94	23.4154
AUGUGACAAUCUUCUCCAGGUCCUU	chr9:105974319-105974533(+)$1	214	81	106	24.3601
AGCUAUAGUGAAUGUUAAUGUAAGA	chr11:79926571-79926785(+)$1	214	155	180	22.1529
UUUAAUUGCCUAAUUAUAUUGUUAA	chrX:12693666-12693878(+)$1	212	42	67	22.9996
AUGAUUUAAACCCUACUGAGAAUCA	chr11:101387710-101387924(-)$1	214	25	50	23.9443
AUCUGGUUUUCUACAAGCUUCAGGU	chr8:72656387-72656607(+)$1	220	194	219	24.2430
ACAGGUAUAUCAAUAACAACCGAGU	chr10:125432419-125432632(+)$1	213	66	91	20.7261
UUCUUUUUCUUAAUUAUAUAGAGAG	chr11:23254917-23255139(+)$1	222	25	50	22.1816
GAUAAAUGGGGAAAAUUGAAUUUAU	chr17:33797107-33797319(-)$1	212	179	204	23.9443
ACAGUCAUCAAAAAGUACGUCUUGG	chr2:144080998-144081209(-)$1	211	120	145	22.8366
ACCAGUGUGCUAAUAUAAUGGCUGG	chr10:62301216-62301434(-)$1	218	163	188	21.7902
UCCCAUGGCUAUUGAAGAACAGGUG	chr18:78020487-78020698(+)$1	211	51	76	22.0308
GAAGGGCAUCGAGCAUCACCCCAAU	chr4:44065739-44065958(-)$1	219	134	159	24.0484
AGAGGCGAACCCGGAGAGCGGCCUC	chr11:95611088-95611308(+)$1	220	38	63	23.0178
GACAUAAACCUUCAGAUUUAUAUAU	chr6:51413376-51413586(-)$1	210	34	59	20.3592
AACUAGACCAGAAGUUACUCAUAGG	chr4:21669733-21669943(+)$1	210	120	145	22.8014
AUGUCCCUCUCUCCACCUGGGGCAA	chr1:63132631-63132841(-)$1	210	35	60	22.6134
AAAGGACCUGCCAGCCAUUCCUGGG	chr8:28383711-28383931(+)$1	220	153	178	22.7806

#DB
((((((............)))))).	chr11:117627444-117627661(-)$1	1	152	177	22.6399
.((((((...........)))))))	chr11:68801869-68802080(-)$1	1	7	32	22.3456
(((((((...........)))))))	chr14:21834063-21834279(+)$1	1	143	168	23.6865
...((((...........))))...	chr10:80356922-80357142(-)$1	1	48	73	19.9710
(((..((...........))..)))	chr8:108361044-108361259(-)$1	1	128	153	21.3046
((((................)))).	chr7:31267436-31267651(+)$1	1	35	60	20.2060
((..(((...........)))))))	chr11:98831785-98832009(+)$1	1	87	112	23.7281
((.(((..............))).)	chr14:31828437-31828650(-)$1	1	27	52	23.0245
(((((((............))))))	chr3:65751742-65751959(-)$1	1	2	27	23.8852
..(((((...........)))))))	chr5:115545153-115545370(+)$1	1	177	202	21.9099
.((((((...........)))))).	chr17:24386169-24386385(-)$1	1	110	135	20.6210
((((((.............))))))	chr7:109147348-109147568(+)$1	1	132	157	22.1816
(((((((............)))).)	chr18:39583990-39584206(-)$1	1	170	195	22.8743
.((((((...........)))))).	chr16:18280275-18280499(-)$1	1	86	111	20.6210
(.(.(((...........))).)))	chr9:43962262-43962494(-)$1	1	90	115	22.9400
((((((.............))))))	chr5:115698905-115699122(-)$1	1	134	159	22.9331
((.((((...........)))))))	chr17:46569934-46570152(-)$1	1	7	32	22.6343
(((.(((............))))))	chr11:86539775-86539993(-)$1	1	86	111	23.2601
(((((((...........).)))))	chr17:36117989-36118211(+)$1	1	21	46	24.2897
(((((((............))))))	chr4:123060486-123060697(-)$1	1	30	55	24.0527
(...(((............))))))	chrM:8961-9181(+)$1	1	30	55	23.4957
(((((((...........)))))))	chrM:12473-12697(-)$1	1	196	221	21.0101
((((((.............))))))	chr13:46770794-46771013(+)$1	1	153	178	24.2430
((((((.............))))))	chr19:6365581-6365801(+)$1	1	7	32	24.2430
((.(((..............))).)	chr9:78405167-78405386(-)$1	1	7	32	23.0245
)((((((............))).))	chr4:55021867-55022079(+)$1	1	82	107	23.9074
(((((((...........)))))))	chrM:12306-12529(-)$1	1	28	53	23.4979
.(((((..............)))))	chrX:98758779-98758996(+)$1	1	63	88	21.0463
.(((((..............)))))	chr2:103612735-103612946(-)$1	1	1	26	21.0463
((((.((.............)))))	chr1:58072306-58072522(+)$1	1	46	71	22.1114
((((................)))).	chr7:109608772-109608988(+)$1	1	129	154	20.4329
((................).)))))	chr12:56192156-56192369(+)$1	1	112	137	19.6870
..((((.............))))..	chr4:32068416-32068627(+)$1	1	146	171	23.4432
..((((............)))))))	chr1:63591931-63592148(+)$1	1	58	83	22.9343
((.(((............)))))).	chr6:83133183-83133401(+)$1	1	79	104	24.0072
((.(((.............))).))	chr5:139721291-139721509(+)$1	1	156	181	24.1821
)(((.((...........)).))).	chr7:151649174-151649389(-)$1	1	168	193	21.5778
(.((((.............))))..	chr4:141045784-141045999(-)$1	1	65	90	22.9912
(..(((............))))).)	chr7:20323274-20323484(-)$1	1	69	94	23.4154
(.(.(((............)))).)	chr9:105974319-105974533(+)$1	1	81	106	24.3601
...((((...........))))..)	chr11:79926571-79926785(+)$1	1	155	180	22.1529
((((((..............)))))	chrX:12693666-12693878(+)$1	1	42	67	22.9996
(((((((............))))))	chr11:101387710-101387924(-)$1	1	25	50	23.9443
((((((.............))))))	chr8:72656387-72656607(+)$1	1	194	219	24.2430
...(((............)))((((	chr10:125432419-125432632(+)$1	1	66	91	20.7261
((((((.............))))))	chr11:23254917-23255139(+)$1	1	25	50	22.1816
(((((((............))))))	chr17:33797107-33797319(-)$1	1	179	204	23.9443
(.((.(............).)))))	chr2:144080998-144081209(-)$1	1	120	145	22.8366
((((((..............)))))	chr10:62301216-62301434(-)$1	1	163	188	21.7902
(.((.((............)))).)	chr18:78020487-78020698(+)$1	1	51	76	22.0308
(..(((.............)))..)	chr4:44065739-44065958(-)$1	1	134	159	24.0484
((((((..............)))))	chr11:95611088-95611308(+)$1	1	38	63	23.0178
((((((................)))	chr6:51413376-51413586(-)$1	1	34	59	20.3592
(.(((((...........)).))).	chr4:21669733-21669943(+)$1	1	120	145	22.8014
.((((((...........)))))).	chr1:63132631-63132841(-)$1	1	35	60	22.6134
..((((............)))))))	chr8:28383711-28383931(+)$1	1	153	178	22.7806

#PSSM
e : 0.19	g : 0.16	f : 0.08	: : 0.08	" : 0.07	d : 0.07	h : 0.07	= : 0.05	b : 0.05	c : 0.05	! : 0.03	i : 0.01	$ : 0.01	[ : 0.01	
f : 0.14	e : 0.14	g : 0.14	[ : 0.10	" : 0.07	d : 0.07	c : 0.07	! : 0.07	= : 0.05	h : 0.05	i : 0.01	$ : 0.01	a : 0.01	: : 0.01	
f : 0.14	d : 0.14	g : 0.14	[ : 0.08	e : 0.08	= : 0.05	" : 0.05	! : 0.05	h : 0.05	c : 0.05	a : 0.03	b : 0.03	i : 0.01	y : 0.01	: : 0.01	
d : 0.17	c : 0.17	f : 0.14	g : 0.14	e : 0.07	= : 0.05	h : 0.05	[ : 0.05	! : 0.03	b : 0.03	i : 0.01	" : 0.01	y : 0.01	
c : 0.24	f : 0.14	d : 0.14	g : 0.14	[ : 0.07	= : 0.05	y : 0.05	e : 0.05	h : 0.05	! : 0.01	i : 0.01	
c : 0.23	f : 0.14	d : 0.14	g : 0.14	b : 0.08	= : 0.05	y : 0.05	e : 0.05	h : 0.05	i : 0.01	a : 0.01	
v : 0.17	u : 0.12	w : 0.12	c : 0.10	b : 0.08	f : 0.07	d : 0.07	y : 0.07	g : 0.05	= : 0.03	i : 0.01	e : 0.01	a : 0.01	h : 0.01	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
u : 0.30	t : 0.30	v : 0.19	w : 0.12	y : 0.07	
v : 0.19	u : 0.17	w : 0.12	f : 0.08	d : 0.08	c : 0.08	b : 0.05	y : 0.05	a : 0.05	= : 0.01	e : 0.01	h : 0.01	g : 0.01	
c : 0.19	d : 0.14	w : 0.12	f : 0.10	g : 0.10	b : 0.07	y : 0.05	h : 0.05	] : 0.05	= : 0.03	i : 0.01	e : 0.01	v : 0.01	
c : 0.23	d : 0.17	g : 0.14	f : 0.12	e : 0.07	= : 0.05	h : 0.05	b : 0.05	] : 0.03	2 : 0.01	i : 0.01	y : 0.01	
c : 0.19	d : 0.17	g : 0.14	f : 0.12	e : 0.10	b : 0.07	= : 0.05	h : 0.05	2 : 0.01	i : 0.01	] : 0.01	y : 0.01	
e : 0.17	f : 0.14	g : 0.14	d : 0.12	c : 0.10	h : 0.07	= : 0.05	a : 0.03	] : 0.03	b : 0.03	2 : 0.03	5 : 0.01	i : 0.01	
e : 0.16	f : 0.14	g : 0.14	c : 0.12	] : 0.10	d : 0.07	h : 0.07	= : 0.05	2 : 0.05	5 : 0.01	i : 0.01	b : 0.01	3 : 0.01	
e : 0.23	g : 0.16	f : 0.08	] : 0.07	d : 0.07	c : 0.07	h : 0.07	= : 0.05	2 : 0.05	: : 0.05	5 : 0.01	i : 0.01	b : 0.01	3 : 0.01	

#score	1266.2388814524888
#seq	56
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_CDS_m1_run2.txt

#BEAR
hhhhhhhhyyyyyyyyyyyyyyyyhhhh	chr1:155330843-155331070(-)$1	227	13	41	20.9721
iiiiiiiiuuuuuuuuuuuuiiiiiiii	chr11:97048632-97048861(-)$1	229	51	79	25.5284
ggggg[ccctttttttttttcccggggg	chr11:51415245-51415475(-)$1	230	163	191	23.7571
gggg!!ccctttttttttttccc22ggg	chr6:51414341-51414573(-)$1	232	141	169	23.2935
%%%ddddvvvvvvvvvvvvvddddeeee	chr5:77407598-77407823(+)$1	225	138	166	20.6920
fffeeeeeyyyyyyyyyyyyyyyyeeee	chr4:55402657-55402877(+)$1	220	76	104	20.9175
========ttttttttttt=========	chr11:77506320-77506549(+)$1	229	160	188	23.5170
cca[bbbbwwwwwwwwwwwwwwbb]bb]	chr3:95738611-95738846(+)$1	235	166	194	21.8215
!gggggggxxxxxxxxxxxxxxxggggg	chr13:56824902-56825138(+)$1	236	86	114	20.2840
hhhhbbwwwwwwwwwwwwwwbb]hhhhh	chr2:71258148-71258374(+)$1	226	103	131	21.6606
!!ccc[bbyyyyyyyyyyyyyyyybbcc	chr8:35897411-35897638(-)$1	227	186	214	21.3642
========uuuuuuuuuuuu========	chr11:104374204-104374432(-)$1	228	78	106	25.6327
igggggggwwwwwwwwwwwwwwgggggg	chr1:36406153-36406380(-)$1	227	184	212	24.2879
========xxxxxxxxxxxxxxx=====	chr13:46799956-46800193(-)$1	237	129	157	20.5502
[ggggggguuuuuuuuuuuuggggggg3	chr2:119265071-119265300(-)$1	229	64	92	25.0827
iiiiiiiiuuuuuuuuuuuuiiiiiiii	chr9:61908001-61908239(-)$1	238	187	215	25.5284
hhhhhhhhvvvvvvvvvvvvvhhhhhhh	chr1:58596890-58597117(-)$1	227	85	113	22.6512
!!ddddwwwwwwwwwwwwwwdddd22dd	chr12:85683844-85684074(+)$1	230	76	104	22.2772
hhhhhhhhuuuuuuuuuuuuhhhhhhhh	chr4:141073089-141073325(-)$1	236	162	190	22.6456
g[ffffffuuuuuuuuuuuuffffff]g	chr1:55057780-55058005(-)$1	225	113	141	23.2201
ccc[ddddvvvvvvvvvvvvvdddd]cc	chr3:14588044-14588268(+)$1	224	163	191	23.5792
ddd[ddddvvvvvvvvvvvvvddddddd	chr6:134710960-134711188(-)$1	228	45	73	22.6667
"bb[ddddwwwwwwwwwwwwwwdddd]b	chr3:65752580-65752811(-)$1	231	58	86	22.3217
!eeeeeccctttttttttttccc]eeee	chr12:8712656-8712931(+)$1	275	219	247	22.7562
eeeeeeeeuuuuuuuuuuuueeeee22e	chr19:8904164-8904398(+)$1	234	125	153	23.1445
fggggggguuuuuuuuuuuuggggggg:	chr4:90919800-90920042(-)$1	242	56	84	23.7912
ccc[bb[bbtttttttttttbb]bbccc	chr15:81610733-81610981(+)$1	248	125	153	20.7792
!!eeeeevvvvvvvvvvvvveeeeehhh	chr8:112357271-112357507(+)$1	236	114	142	23.3361
ffffffwwwwwwwwwwwwwwffffff::	chr1:155315938-155316173(-)$1	235	49	77	19.6740
iiiiiiiixxxxxxxxxxxxxxxiiiii	chr18:35732404-35732638(+)$1	234	161	189	20.5198
ddd[a[ccctttttttttttccc]a]dd	chrX:103035172-103035402(-)$1	230	85	113	22.5070
gggggggvvvvvvvvvvvvvggggggg:	chr15:66426612-66426843(+)$1	231	41	69	23.3974
!!bb[awwwwwwwwwwwwwwa]bb22ff	chr3:68883237-68883463(-)$1	226	6	34	22.2055
eeeee[ayyyyyyyyyyyyyyyya]eee	chr4:115751931-115752162(+)$1	231	94	122	22.0668
[eeeeewwwwwwwwwwwwwweeeee]hh	chr18:35732070-35732334(+)$1	264	187	215	22.7495
bb!!dddduuuuuuuuuuuudddd22bb	chr8:8639326-8639566(-)$1	240	122	150	22.5479
!!ddddyyyyyyyyyyyyyyyydddddd	chr7:17147807-17148041(-)$1	234	186	214	21.6062
hhhhddddvvvvvvvvvvvvvdddd]hh	chr16:91675577-91675822(+)$1	245	84	112	23.1880
fffff[bbuuuuuuuuuuuubb]fffff	chr10:20042780-20043029(+)$1	249	120	148	22.5947
!gggggggtttttttttttggggggg22	chr1:135033215-135033443(+)$1	228	168	196	22.4849
!gggggggtttttttttttggggggg22	chr2:168013001-168013223(-)$1	222	51	79	22.4849
dddd[ccctttttttttttccc333ddd	chr11:23233596-23233830(+)$1	234	137	165	22.0365
!!bbddddvvvvvvvvvvvvvdddd]bb	chr10:36711463-36711694(+)$1	231	108	136	22.9325
hhhh[cccxxxxxxxxxxxxxxxccc]h	chr10:41916236-41916457(-)$1	221	111	139	19.4407
iiiiiiiivvvvvvvvvvvvviiiiiii	chr14:19052401-19052634(-)$1	233	140	168	25.2433
$$bb[cccvvvvvvvvvvvvvccc]bb5	chr5:147104129-147104368(+)$1	239	107	135	22.4177
ee::cccvvvvvvvvvvvvvccccccmm	chr5:106317661-106317887(+)$1	226	117	145	20.6384
FF:::cccuuuuuuuuuuuuccceeeee	chr12:60173625-60173854(+)$1	229	162	190	20.3765
eee!!cccuuuuuuuuuuuuccceeeee	chr12:86266575-86266806(-)$1	231	12	40	24.6024
========vvvvvvvvvvvvv=======	chr5:108523111-108523338(+)$1	227	7	35	25.2929
========vvvvvvvvvvvvv=======	chr5:100465401-100465659(-)$1	258	25	53	25.2929
ffffffwwwwwwwwwwwwwwffffff]c	chr7:140158230-140158451(+)$1	221	77	105	21.7498
ee!!cccwwwwwwwwwwwwwwccc]eee	chr13:112223687-112223947(-)$1	260	151	179	23.8875
eeee[cccvvvvvvvvvvvvvccc22ee	chr18:42379450-42379691(-)$1	241	113	141	24.0960
[ccc[cccuuuuuuuuuuuuccc]ccc]	chrX:35966352-35966580(+)$1	228	103	131	25.0772
iiiiiiiwwwwwwwwwwwwwwiiiiiii	chr9:64564608-64564839(-)$1	231	20	48	24.8113
deeeeewwwwwwwwwwwwwweeeee]dd	chr12:35791297-35791518(+)$1	221	149	177	22.2316
!!cccyyyyyyyyyyyyyyyyccc333c	chr3:40570665-40570904(+)$1	239	149	177	22.5567

#otherMatches

#Seq PSSM
UGUGAUAGAAUGUAUGAGGUUUUGCUAU	chr1:155330843-155331070(-)$1	227	13	41	20.9721
GGGGUGGCCCCUCUGACCCCGCUGCCUC	chr11:97048632-97048861(-)$1	229	51	79	25.5284
UAUGGCGGCUACGACUACUCGCCCUAUG	chr11:51415245-51415475(-)$1	230	163	191	23.7571
GAGGAGGUAAUAAAUUCAUCUACAACCU	chr6:51414341-51414573(-)$1	232	141	169	23.2935
UACUGCUUUAAAUAUCUGUUGGCAACCA	chr5:77407598-77407823(+)$1	225	138	166	20.6920
CUUCCUUUUUUUUUUUUUCCAGUUAAAG	chr4:55402657-55402877(+)$1	220	76	104	20.9175
UUCUGGGUCACAUUCUAAAACCUGGGAC	chr11:77506320-77506549(+)$1	229	160	188	23.5170
UGAGUGGAAACAAAAUAAAAGAUCUCAG	chr3:95738611-95738846(+)$1	235	166	194	21.8215
GUCCAGCCGUGAAGCGAUUGUUGGGCUG	chr13:56824902-56825138(+)$1	236	86	114	20.2840
AAUCAGACAAAUCAUUCCACCUGGGUUU	chr2:71258148-71258374(+)$1	226	103	131	21.6606
GAGCGAGAGCCAUACUGAAGACUAUCCG	chr8:35897411-35897638(-)$1	227	186	214	21.3642
UCAUACUUUCUUAUAAUUUCAGGUAUGG	chr11:104374204-104374432(-)$1	228	78	106	25.6327
AGCCUUUCUCACUCUGGACCAUGAAGGG	chr1:36406153-36406380(-)$1	227	184	212	24.2879
GCAAGAUGAGAAGAGAGAGAACACAUUU	chr13:46799956-46800193(-)$1	237	129	157	20.5502
ACAGCAGGCUAACCUCAUUUUCUGUUGC	chr2:119265071-119265300(-)$1	229	64	92	25.0827
CGGCAUGGAAUCUCUUAAAGCCAUGCUG	chr9:61908001-61908239(-)$1	238	187	215	25.5284
UUGUAUUAGAUCCUGAAUUUAUGGUGCA	chr1:58596890-58597117(-)$1	227	85	113	22.6512
cucUAUUCAUUUCCAAUUUUAUAGUUAC	chr12:85683844-85684074(+)$1	230	76	104	22.2772
UUUGAUCGGACAAGACAUUACGAUCAGG	chr4:141073089-141073325(-)$1	236	162	190	22.6456
AGUGGAAGGCCGAGAGAUUAUUUCUAAU	chr1:55057780-55058005(-)$1	225	113	141	23.2201
AAGAUCUCGAAUUGAAGGAAAGAGAACU	chr3:14588044-14588268(+)$1	224	163	191	23.5792
AUCAUCGUGGCAAAUUAAAGAACGAGGU	chr6:134710960-134711188(-)$1	228	45	73	22.6667
GUUUGCUUAUGAACUAAACUUAGAGCUG	chr3:65752580-65752811(-)$1	231	58	86	22.3217
AUGAAUAAAUUCAAAAUUUUUUUAAUUC	chr12:8712656-8712931(+)$1	275	219	247	22.7562
GGGGAGCUGGAAAAAGAGGAAGCUCAAC	chr19:8904164-8904398(+)$1	234	125	153	23.1445
UGGGAGACAGAGUCCUGCAGGUCUCCUU	chr4:90919800-90920042(-)$1	242	56	84	23.7912
GUACGGGGAUAACUGCACCUUCGCCUAC	chr15:81610733-81610981(+)$1	248	125	153	20.7792
ACUAGUAAAAAUGUAGGAAAUGCUAUUC	chr8:112357271-112357507(+)$1	236	114	142	23.3361
AACAAAACUUUUCUUUUCUCUUUGUUCU	chr1:155315938-155316173(-)$1	235	49	77	19.6740
GAUUUGCCAGUUCAUUCUAAUAAGGUGA	chr18:35732404-35732638(+)$1	234	161	189	20.5198
GCCCUGAUUUUGUUGUUUGUGAUGAAGG	chrX:103035172-103035402(-)$1	230	85	113	22.5070
GAUCUUAAAAGUUGUUUGAAUAGGAUUU	chr15:66426612-66426843(+)$1	231	41	69	23.3974
CCUAUCUUAUCCAACAAAAUGUUAUUCC	chr3:68883237-68883463(-)$1	226	6	34	22.2055
CCUCUGCUCAAUAUAUAUUACUUGGAGA	chr4:115751931-115752162(+)$1	231	94	122	22.0668
CUAGUCUCAACCCAGUGCUUGAUUAUGA	chr18:35732070-35732334(+)$1	264	187	215	22.7495
CAAAUUGGAUAUUAUUUGCCCCAAAGUG	chr8:8639326-8639566(-)$1	240	122	150	22.5479
AGGAUAUUAUCCCCAUCCAGCUUGUCGC	chr7:17147807-17148041(-)$1	234	186	214	21.6062
CAGCCCCAGUGACUGGAGGAAUGGGAGC	chr16:91675577-91675822(+)$1	245	84	112	23.1880
GUAUUAUCAAGGAGGAGGAGGGAGAUAC	chr10:20042780-20043029(+)$1	249	120	148	22.5947
UUUGAGCACAGAGAAAAAAUGUUUAAUA	chr1:135033215-135033443(+)$1	228	168	196	22.4849
CACUGUUUUCUAGGAUUUUAAACAGUUU	chr2:168013001-168013223(-)$1	222	51	79	22.4849
UCUGAUCCUUUUAGUUUAUGGAAUACAG	chr11:23233596-23233830(+)$1	234	137	165	22.0365
GAGAGUCUUAUAUAUUGACAUAGACAUC	chr10:36711463-36711694(+)$1	231	108	136	22.9325
UGCUAAGCAGGCCUCAUCUCAAAGCUGG	chr10:41916236-41916457(-)$1	221	111	139	19.4407
UGAAGGCUGUAAGGUAAAAAAAGCUUUU	chr14:19052401-19052634(-)$1	233	140	168	25.2433
AACGUCAGAACCAAUAUUUCACUGUCGA	chr5:147104129-147104368(+)$1	239	107	135	22.4177
CUUAUCCUGAAAGUACGUUUGGAAGCAG	chr5:106317661-106317887(+)$1	226	117	145	20.6384
CAAAAGGCGUUAAUGAAGAAGCCAGGCU	chr12:60173625-60173854(+)$1	229	162	190	20.3765
GCUUUGUGUCUUCCUAUCUCCGCAGUAC	chr12:86266575-86266806(-)$1	231	12	40	24.6024
UAUUUUGAUUAUUUUUGGAUUUCAGGGU	chr5:108523111-108523338(+)$1	227	7	35	25.2929
AUUAUGAUCAAGGAUAUGGAAAUUAUAA	chr5:100465401-100465659(-)$1	258	25	53	25.2929
UGGCUACACUCUGGUACAUCUGGCCAUA	chr7:140158230-140158451(+)$1	221	77	105	21.7498
CUGAGGAUGAAAUGAGAGAAUUCCAAGU	chr13:112223687-112223947(-)$1	260	151	179	23.8875
AACAGAUCAAAACUAUGAAAAGAUGAUG	chr18:42379450-42379691(-)$1	241	113	141	24.0960
UGGCAUAUGAAGACAUAUAAAUGAGCCU	chrX:35966352-35966580(+)$1	228	103	131	25.0772
GUUUCUGUUUCUUCUGUCAUUCAGAGAU	chr9:64564608-64564839(-)$1	231	20	48	24.8113
UGAAGACCCAACUCCAGAAAUCUUUGAU	chr12:35791297-35791518(+)$1	221	149	177	22.2316
AAGACCAAAUAUAAGAUAAAUGUCAAAG	chr3:40570665-40570904(+)$1	239	149	177	22.5567

#DB
((((((((................))))	chr1:155330843-155331070(-)$1	1	13	41	20.9721
((((((((............))))))))	chr11:97048632-97048861(-)$1	1	51	79	25.5284
(((((.(((...........))))))))	chr11:51415245-51415475(-)$1	1	163	191	23.7571
((((..(((...........)))..)))	chr6:51414341-51414573(-)$1	1	141	169	23.2935
...((((.............))))))))	chr5:77407598-77407823(+)$1	1	138	166	20.6920
)))(((((................))))	chr4:55402657-55402877(+)$1	1	76	104	20.9175
((((((((...........)))))))))	chr11:77506320-77506549(+)$1	1	160	188	23.5170
(((.((((..............)).)).	chr3:95738611-95738846(+)$1	1	166	194	21.8215
.(((((((...............)))))	chr13:56824902-56825138(+)$1	1	86	114	20.2840
((((((..............)).)))))	chr2:71258148-71258374(+)$1	1	103	131	21.6606
..(((.((................))))	chr8:35897411-35897638(-)$1	1	186	214	21.3642
((((((((............))))))))	chr11:104374204-104374432(-)$1	1	78	106	25.6327
)(((((((..............))))))	chr1:36406153-36406380(-)$1	1	184	212	24.2879
((((((((...............)))))	chr13:46799956-46800193(-)$1	1	129	157	20.5502
.(((((((............))))))).	chr2:119265071-119265300(-)$1	1	64	92	25.0827
((((((((............))))))))	chr9:61908001-61908239(-)$1	1	187	215	25.5284
((((((((.............)))))))	chr1:58596890-58597117(-)$1	1	85	113	22.6512
..((((..............))))..))	chr12:85683844-85684074(+)$1	1	76	104	22.2772
((((((((............))))))))	chr4:141073089-141073325(-)$1	1	162	190	22.6456
(.((((((............)))))).)	chr1:55057780-55058005(-)$1	1	113	141	23.2201
(((.((((.............)))).))	chr3:14588044-14588268(+)$1	1	163	191	23.5792
(((.((((.............)))))))	chr6:134710960-134711188(-)$1	1	45	73	22.6667
.((.((((..............)))).)	chr3:65752580-65752811(-)$1	1	58	86	22.3217
.((((((((...........))).))))	chr12:8712656-8712931(+)$1	1	219	247	22.7562
((((((((............)))))..)	chr19:8904164-8904398(+)$1	1	125	153	23.1445
)(((((((............))))))).	chr4:90919800-90920042(-)$1	1	56	84	23.7912
(((.((.((...........)).)))))	chr15:81610733-81610981(+)$1	1	125	153	20.7792
..(((((.............))))))))	chr8:112357271-112357507(+)$1	1	114	142	23.3361
((((((..............))))))..	chr1:155315938-155316173(-)$1	1	49	77	19.6740
((((((((...............)))))	chr18:35732404-35732638(+)$1	1	161	189	20.5198
(((.(.(((...........))).).))	chrX:103035172-103035402(-)$1	1	85	113	22.5070
(((((((.............))))))).	chr15:66426612-66426843(+)$1	1	41	69	23.3974
..((.(..............).))..))	chr3:68883237-68883463(-)$1	1	6	34	22.2055
(((((.(................).)))	chr4:115751931-115752162(+)$1	1	94	122	22.0668
.(((((..............))))).))	chr18:35732070-35732334(+)$1	1	187	215	22.7495
((..((((............))))..))	chr8:8639326-8639566(-)$1	1	122	150	22.5479
..((((................))))))	chr7:17147807-17148041(-)$1	1	186	214	21.6062
((((((((.............)))).))	chr16:91675577-91675822(+)$1	1	84	112	23.1880
(((((.((............)).)))))	chr10:20042780-20043029(+)$1	1	120	148	22.5947
.(((((((...........)))))))..	chr1:135033215-135033443(+)$1	1	168	196	22.4849
.(((((((...........)))))))..	chr2:168013001-168013223(-)$1	1	51	79	22.4849
((((.(((...........)))...)))	chr11:23233596-23233830(+)$1	1	137	165	22.0365
..((((((.............)))).))	chr10:36711463-36711694(+)$1	1	108	136	22.9325
((((.(((...............))).)	chr10:41916236-41916457(-)$1	1	111	139	19.4407
((((((((.............)))))))	chr14:19052401-19052634(-)$1	1	140	168	25.2433
..((.(((.............))).)).	chr5:147104129-147104368(+)$1	1	107	135	22.4177
))..(((.............)))(((..	chr5:106317661-106317887(+)$1	1	117	145	20.6384
((...(((............)))(((((	chr12:60173625-60173854(+)$1	1	162	190	20.3765
(((..(((............))))))))	chr12:86266575-86266806(-)$1	1	12	40	24.6024
((((((((.............)))))))	chr5:108523111-108523338(+)$1	1	7	35	25.2929
((((((((.............)))))))	chr5:100465401-100465659(-)$1	1	25	53	25.2929
((((((..............)))))).)	chr7:140158230-140158451(+)$1	1	77	105	21.7498
((..(((..............))).)))	chr13:112223687-112223947(-)$1	1	151	179	23.8875
((((.(((.............)))..))	chr18:42379450-42379691(-)$1	1	113	141	24.0960
.(((.(((............))).))).	chrX:35966352-35966580(+)$1	1	103	131	25.0772
(((((((..............)))))))	chr9:64564608-64564839(-)$1	1	20	48	24.8113
((((((..............))))).))	chr12:35791297-35791518(+)$1	1	149	177	22.2316
..(((................)))...)	chr3:40570665-40570904(+)$1	1	149	177	22.5567

#PSSM
! : 0.18	h : 0.10	i : 0.10	e : 0.10	f : 0.08	= : 0.08	g : 0.06	d : 0.06	c : 0.05	[ : 0.05	% : 0.01	" : 0.01	b : 0.01	$ : 0.01	F : 0.01	
g : 0.15	e : 0.15	! : 0.12	h : 0.10	i : 0.08	= : 0.08	f : 0.06	c : 0.06	d : 0.05	b : 0.03	% : 0.01	[ : 0.01	$ : 0.01	F : 0.01	
g : 0.15	e : 0.13	h : 0.10	i : 0.08	f : 0.08	= : 0.08	c : 0.08	d : 0.08	b : 0.06	! : 0.03	: : 0.03	% : 0.01	a : 0.01	
g : 0.15	e : 0.13	h : 0.10	[ : 0.10	i : 0.08	= : 0.08	d : 0.06	f : 0.06	c : 0.05	b : 0.05	! : 0.05	: : 0.03	
d : 0.15	g : 0.13	e : 0.12	[ : 0.10	i : 0.08	= : 0.08	c : 0.06	f : 0.06	h : 0.05	b : 0.05	! : 0.03	a : 0.01	: : 0.01	
d : 0.15	c : 0.15	g : 0.12	e : 0.10	i : 0.08	[ : 0.08	= : 0.08	h : 0.05	b : 0.05	f : 0.05	! : 0.01	a : 0.01	y : 0.01	
c : 0.22	d : 0.12	g : 0.12	w : 0.12	i : 0.08	= : 0.08	h : 0.05	e : 0.05	b : 0.05	y : 0.03	f : 0.01	[ : 0.01	a : 0.01	
c : 0.18	w : 0.15	g : 0.10	d : 0.10	= : 0.08	i : 0.06	v : 0.06	b : 0.06	h : 0.05	y : 0.05	e : 0.03	f : 0.01	
v : 0.24	u : 0.22	w : 0.20	y : 0.10	c : 0.06	t : 0.06	x : 0.06	b : 0.01	
v : 0.24	u : 0.22	w : 0.20	t : 0.15	y : 0.10	x : 0.06	
v : 0.24	u : 0.22	w : 0.20	t : 0.15	y : 0.10	x : 0.06	
v : 0.24	u : 0.22	w : 0.20	t : 0.15	y : 0.10	x : 0.06	
v : 0.24	u : 0.22	w : 0.20	t : 0.15	y : 0.10	x : 0.06	
v : 0.24	u : 0.22	w : 0.20	t : 0.15	y : 0.10	x : 0.06	
v : 0.24	u : 0.22	w : 0.20	t : 0.15	y : 0.10	x : 0.06	
v : 0.24	u : 0.22	w : 0.20	t : 0.15	y : 0.10	x : 0.06	
v : 0.24	u : 0.22	w : 0.20	t : 0.15	y : 0.10	x : 0.06	
v : 0.24	u : 0.22	w : 0.20	t : 0.15	y : 0.10	x : 0.06	
v : 0.24	u : 0.22	w : 0.20	t : 0.15	y : 0.10	x : 0.06	
v : 0.24	u : 0.22	w : 0.20	y : 0.10	t : 0.08	x : 0.06	g : 0.03	= : 0.01	c : 0.01	
v : 0.17	c : 0.15	y : 0.10	w : 0.08	g : 0.08	x : 0.06	e : 0.06	d : 0.05	b : 0.05	f : 0.05	i : 0.03	= : 0.03	h : 0.01	a : 0.01	
c : 0.22	d : 0.12	y : 0.08	g : 0.08	i : 0.06	= : 0.06	x : 0.06	e : 0.06	w : 0.05	b : 0.05	f : 0.05	h : 0.03	] : 0.01	
c : 0.20	d : 0.15	g : 0.10	y : 0.06	i : 0.06	= : 0.06	x : 0.06	e : 0.06	] : 0.05	f : 0.05	b : 0.03	h : 0.03	3 : 0.01	
d : 0.15	g : 0.13	e : 0.10	c : 0.10	i : 0.08	= : 0.08	f : 0.06	y : 0.05	b : 0.05	h : 0.05	] : 0.05	2 : 0.01	a : 0.01	3 : 0.01	
e : 0.15	g : 0.13	d : 0.10	i : 0.08	2 : 0.08	= : 0.08	h : 0.06	] : 0.06	f : 0.06	c : 0.05	b : 0.03	3 : 0.03	a : 0.01	
g : 0.15	e : 0.12	] : 0.10	h : 0.08	i : 0.08	= : 0.08	2 : 0.08	f : 0.06	d : 0.06	c : 0.06	b : 0.05	3 : 0.01	
e : 0.13	h : 0.12	g : 0.12	d : 0.10	i : 0.08	= : 0.08	b : 0.06	c : 0.06	] : 0.06	2 : 0.05	f : 0.03	: : 0.01	m : 0.01	3 : 0.01	
e : 0.15	h : 0.13	d : 0.10	i : 0.08	g : 0.08	= : 0.08	c : 0.08	b : 0.05	: : 0.05	] : 0.03	f : 0.03	2 : 0.03	3 : 0.01	5 : 0.01	m : 0.01	

#score	1318.7719988128777
#seq	58
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_CDS_m2_run1.txt

#BEAR
cc[bbnnnnnbb]	chr4:149018905-149019122(+)$1	217	102	115	9.1602
cddddnnnnnddd	chr6:71550747-71550966(-)$1	219	68	81	9.4984
dddddnnnnnddd	chr18:34473464-34473686(+)$1	222	138	151	9.3708
ggg[annnnna]g	chr2:3413761-3413976(-)$1	215	94	107	9.2301
gggggnnnnnggg	chrM:6912-7138(+)$1	226	75	88	9.3683
eeeeennnnneee	chr1:95311327-95311539(-)$1	212	193	206	9.0581
ccc[annnnna]c	chr16:94664796-94665014(+)$1	218	89	102	9.5028
=====nnnnn===	chr7:138043986-138044199(+)$1	213	13	26	9.5137
gggggnnnnnggg	chr18:35022928-35023142(+)$1	214	177	190	9.3683
eeeeennnnneee	chr2:60085846-60086065(+)$1	219	60	73	9.0581
#ddddnnnnnddd	chr4:136114326-136114540(-)$1	214	6	19	9.5169
eeeeennnnneee	chr8:113158905-113159122(+)$1	217	11	24	9.0581
[ddddnnnnnddd	chr17:45708291-45708501(-)$1	210	56	69	9.5679
ddcccnnnnnccc	chr17:36024713-36024930(+)$1	217	173	186	10.1440
cc[bbnnnnnbb]	chr7:125289540-125289752(-)$1	212	136	149	9.1602
:ddddnnnnnddd	chr9:30972107-30972318(-)$1	211	57	70	8.6558
eddddnnnnnddd	chr2:37240692-37240907(-)$1	215	104	117	9.4509
""cccnnnnnccc	chr15:96408920-96409137(-)$1	217	122	135	10.3929
!ddddnnnnnddd	chr16:14471998-14472210(+)$1	212	87	100	9.6256
eeeeennnnneee	chr19:35022004-35022222(+)$1	218	170	183	9.0581
ff[bbnnnnnbb2	chr9:31206703-31206926(+)$1	223	137	150	8.6048
c[cccnnnnnccc	chr1:33834498-33834722(-)$1	224	126	139	10.4450
eeeeennnnneee	chr5:108244745-108244962(-)$1	217	190	203	9.0581
hhcccnnnnnccc	chr12:85499868-85500087(-)$1	219	89	102	9.9279
:ddddnnnnnddd	chr11:57866066-57866285(+)$1	219	156	169	8.6558
eeeeennnnneee	chr7:28066309-28066527(+)$1	218	57	70	9.0581
eeeeennnnneee	chr10:127789979-127790190(+)$1	211	9	22	9.0581
b[cccnnnnnccc	chr15:79371473-79371691(-)$1	218	23	36	10.2285
"""bbnnnnnbb3	chr9:72590375-72590593(+)$1	218	116	129	9.1288
c[cccnnnnnccc	chr14:52803535-52803749(-)$1	214	177	190	10.4450
cccccnnnnnccc	chr4:98403985-98404207(+)$1	222	97	110	10.2890
cc[bbnnnnnbb]	chr6:29833522-29833733(+)$1	211	176	189	9.1602
ii[bbnnnnnbb]	chr2:168575422-168575646(-)$1	224	34	47	9.1471
!!cccnnnnnccc	chr16:94908063-94908273(+)$1	210	45	58	10.5820
!!cccnnnnnccc	chr17:88383880-88384094(+)$1	214	106	119	10.5820
::cccnnnnnccc	chr7:29679169-29679388(-)$1	219	43	56	8.5658
"ddddnnnnnddd	chr5:92485239-92485462(-)$1	223	156	169	9.5538
d:cccnnnnnccc	chr8:63406050-63406266(-)$1	216	200	213	9.2807
!ddddnnnnnddd	chr15:76720521-76720741(+)$1	220	75	88	9.6256
[cccannnnna]c	chr11:51517754-51517970(-)$1	216	81	94	9.8073
hhhhhnnnnnhhh	chr2:29029073-29029292(+)$1	219	76	89	8.5400
ddcccnnnnnccc	chr9:66220257-66220474(+)$1	217	150	163	10.1440
c:cccnnnnnccc	chr7:34942252-34942466(-)$1	214	116	129	9.4084
::cccnnnnnccc	chr16:43898146-43898360(+)$1	214	1	14	8.5658
f[cccnnnnnccc	chr7:30562325-30562541(+)$1	216	67	80	10.2814
cddddnnnnnddd	chrX:12733640-12733859(+)$1	219	128	141	9.4984
e[cccnnnnnccc	chr15:102164526-102164736(+)$1	210	116	129	10.3975
fffffnnnnnfff	chr11:82842529-82842748(-)$1	219	23	36	8.4560
eeeeennnnneee	chr1:182517312-182517525(+)$1	213	18	31	9.0581
a[cccnnnnnccc	chr4:44038234-44038453(+)$1	219	188	201	10.4466
!ddddnnnnnddd	chr5:102336495-102336705(-)$1	210	62	75	9.6256
b!!bbnnnnnbb2	chr11:29607444-29607667(+)$1	223	87	100	8.8702
::cccnnnnnccc	chr11:102171723-102171942(-)$1	219	130	143	8.5658
d!!bbnnnnnbb2	chr17:20707265-20707481(-)$1	216	177	190	8.9590
eeeeennnnneee	chr6:100811330-100811543(+)$1	213	188	201	9.0581
!!cccnnnnnccc	chr5:45894552-45894768(+)$1	216	89	102	10.5820
!!cccnnnnnccc	chrX:148674481-148674697(+)$1	216	81	94	10.5820
d[cccnnnnnccc	chr17:21723591-21723802(+)$1	211	106	119	10.3174
bb[bbnnnnnbb]	chr13:21842235-21842459(-)$1	224	63	76	8.6596
gggggnnnnnggg	chr19:46358458-46358670(+)$1	212	131	144	9.3683
fffffnnnnnfff	chr7:125346461-125346681(-)$1	220	122	135	8.4560
::cccnnnnnccc	chr4:141261838-141262059(-)$1	221	42	55	8.5658
cc[bbnnnnnbb]	chr11:84204963-84205182(+)$1	219	59	72	9.1602
"ddddnnnnnddd	chr13:98015176-98015388(+)$1	212	176	189	9.5538
""cccnnnnnccc	chr2:168582082-168582300(-)$1	218	88	101	10.3929
b[cccnnnnnccc	chr8:98252932-98253147(-)$1	215	48	61	10.2285
e[cccnnnnnccc	chr9:95766927-95767140(+)$1	213	14	27	10.3975
[ddddnnnnnddd	chr4:48481455-48481673(-)$1	218	187	200	9.5679
eecccnnnnnccc	chr1:44230994-44231215(+)$1	221	20	33	10.2114
hhhhhnnnnnhhh	chrM:5339-5561(+)$1	222	95	108	8.5400
cc[bbnnnnnbb]	chr11:83594615-83594839(+)$1	224	175	188	9.1602
eeeeennnnneee	chr13:58496910-58497128(-)$1	218	195	208	9.0581
e[cccnnnnnccc	chrX:108773314-108773532(-)$1	218	191	204	10.3975

#otherMatches

#Seq PSSM
GUGCAUGACCUGG	chr4:149018905-149019122(+)$1	217	102	115	9.1602
AGGCCUAAAUGGC	chr6:71550747-71550966(-)$1	219	68	81	9.4984
UCUGCAGACAGCA	chr18:34473464-34473686(+)$1	222	138	151	9.3708
GUAGAUUCCUUGU	chr2:3413761-3413976(-)$1	215	94	107	9.2301
UAGAUCAAUAAUC	chrM:6912-7138(+)$1	226	75	88	9.3683
CUGCCCAGGUGGC	chr1:95311327-95311539(-)$1	212	193	206	9.0581
GGUGACCACAUGG	chr16:94664796-94665014(+)$1	218	89	102	9.5028
AAAAACUUUUUUU	chr7:138043986-138044199(+)$1	213	13	26	9.5137
UGGccuccccggc	chr18:35022928-35023142(+)$1	214	177	190	9.3683
GAAAGUCAUUCUU	chr2:60085846-60086065(+)$1	219	60	73	9.0581
UAUCUAUUUAAGA	chr4:136114326-136114540(-)$1	214	6	19	9.5169
CCAGGCUACACCU	chr8:113158905-113159122(+)$1	217	11	24	9.0581
AUUGGCAUGACCA	chr17:45708291-45708501(-)$1	210	56	69	9.5679
UCCUGAGAUCCAG	chr17:36024713-36024930(+)$1	217	173	186	10.1440
CCAGGAGUACCCA	chr7:125289540-125289752(-)$1	212	136	149	9.1602
CAGUUCCCCCGAC	chr9:30972107-30972318(-)$1	211	57	70	8.6558
UCAGAUACCUUUU	chr2:37240692-37240907(-)$1	215	104	117	9.4509
UCUUUAUUUAAAA	chr15:96408920-96409137(-)$1	217	122	135	10.3929
AUUCUGAUGAAGA	chr16:14471998-14472210(+)$1	212	87	100	9.6256
UGAAGAUGGACUU	chr19:35022004-35022222(+)$1	218	170	183	9.0581
CUAAGCAGUACUG	chr9:31206703-31206926(+)$1	223	137	150	8.6048
GAUGUAGCCAGCA	chr1:33834498-33834722(-)$1	224	126	139	10.4450
GUUAUAUACAGUA	chr5:108244745-108244962(-)$1	217	190	203	9.0581
GCGCUGAAUAAGC	chr12:85499868-85500087(-)$1	219	89	102	9.9279
CUGCCUUAAUGGU	chr11:57866066-57866285(+)$1	219	156	169	8.6558
UGGAGAAACCCUC	chr7:28066309-28066527(+)$1	218	57	70	9.0581
GAUCCUGAGUGGA	chr10:127789979-127790190(+)$1	211	9	22	9.0581
gacagacagaCUG	chr15:79371473-79371691(-)$1	218	23	36	10.2285
GAACGACUGGCGG	chr9:72590375-72590593(+)$1	218	116	129	9.1288
GUCUGGUGCAUAG	chr14:52803535-52803749(-)$1	214	177	190	10.4450
UUAUCAGACAGAU	chr4:98403985-98404207(+)$1	222	97	110	10.2890
UAGUCGAGGAGAG	chr6:29833522-29833733(+)$1	211	176	189	9.1602
GGAGAAAAGCUCG	chr2:168575422-168575646(-)$1	224	34	47	9.1471
AGUGGGAGAGCCA	chr16:94908063-94908273(+)$1	210	45	58	10.5820
GACGCGAGCAGUG	chr17:88383880-88384094(+)$1	214	106	119	10.5820
UCGCCCGCAUGGC	chr7:29679169-29679388(-)$1	219	43	56	8.5658
AAUUCUUUAUGAG	chr5:92485239-92485462(-)$1	223	156	169	9.5538
CGGGCUGUAUGCC	chr8:63406050-63406266(-)$1	216	200	213	9.2807
CCGUUUGAAUAGC	chr15:76720521-76720741(+)$1	220	75	88	9.6256
ACGUCUAGAUGAA	chr11:51517754-51517970(-)$1	216	81	94	9.8073
AUUUCCUUCCGAA	chr2:29029073-29029292(+)$1	219	76	89	8.5400
CUUCUUGAAUGGA	chr9:66220257-66220474(+)$1	217	150	163	10.1440
CAUCUAAUGAAGA	chr7:34942252-34942466(-)$1	214	116	129	9.4084
GCCCUGAACAAGG	chr16:43898146-43898360(+)$1	214	1	14	8.5658
GCGAGAAGCCCUU	chr7:30562325-30562541(+)$1	216	67	80	10.2814
AGAAUGUUCAGUU	chrX:12733640-12733859(+)$1	219	128	141	9.4984
GAAACCAUGAGUU	chr15:102164526-102164736(+)$1	210	116	129	10.3975
GGUGUAUCAGGCA	chr11:82842529-82842748(-)$1	219	23	36	8.4560
AUCCUUUCCUGGG	chr1:182517312-182517525(+)$1	213	18	31	9.0581
CAAACAACAGGUU	chr4:44038234-44038453(+)$1	219	188	201	10.4466
UCUGUCUCUUGCA	chr5:102336495-102336705(-)$1	210	62	75	9.6256
AAGCUAUACAAGA	chr11:29607444-29607667(+)$1	223	87	100	8.8702
AAGGCCGAGCGCC	chr11:102171723-102171942(-)$1	219	130	143	8.5658
GGAGUAAAAAGCG	chr17:20707265-20707481(-)$1	216	177	190	8.9590
AGUUUGGAGAAAG	chr6:100811330-100811543(+)$1	213	188	201	9.0581
AAGAAAUGGGUUC	chr5:45894552-45894768(+)$1	216	89	102	10.5820
UUUCAGAUUGUGG	chrX:148674481-148674697(+)$1	216	81	94	10.5820
CAUCAACAUGUGA	chr17:21723591-21723802(+)$1	211	106	119	10.3174
CUGAGCUGUCCUG	chr13:21842235-21842459(-)$1	224	63	76	8.6596
AGGUUCCAGUGAU	chr19:46358458-46358670(+)$1	212	131	144	9.3683
GUGGCUCGUUGCU	chr7:125346461-125346681(-)$1	220	122	135	8.4560
AAAGUGUAGAGCU	chr4:141261838-141262059(-)$1	221	42	55	8.5658
CUAAGCCCCACUG	chr11:84204963-84205182(+)$1	219	59	72	9.1602
UUUCUAGAGAAGA	chr13:98015176-98015388(+)$1	212	176	189	9.5538
CUGCAACAAAUGC	chr2:168582082-168582300(-)$1	218	88	101	10.3929
CAGAGUGAAUUUC	chr8:98252932-98253147(-)$1	215	48	61	10.2285
UCAUAAAUAAUGU	chr9:95766927-95767140(+)$1	213	14	27	10.3975
UAGAACUCAUUUC	chr4:48481455-48481673(-)$1	218	187	200	9.5679
GCGCCUGUUUGGC	chr1:44230994-44231215(+)$1	221	20	33	10.2114
AAUUCGAGCAGAA	chrM:5339-5561(+)$1	222	95	108	8.5400
AGUUCAUCCAGAU	chr11:83594615-83594839(+)$1	224	175	188	9.1602
UAAGAGAUUAUUU	chr13:58496910-58497128(-)$1	218	195	208	9.0581
ACUAUGUACAGUA	chrX:108773314-108773532(-)$1	218	191	204	10.3975

#DB
((.((.....)).	chr4:149018905-149019122(+)$1	1	102	115	9.1602
(((((.....)))	chr6:71550747-71550966(-)$1	1	68	81	9.4984
(((((.....)))	chr18:34473464-34473686(+)$1	1	138	151	9.3708
(((.(.....).)	chr2:3413761-3413976(-)$1	1	94	107	9.2301
(((((.....)))	chrM:6912-7138(+)$1	1	75	88	9.3683
(((((.....)))	chr1:95311327-95311539(-)$1	1	193	206	9.0581
(((.(.....).)	chr16:94664796-94665014(+)$1	1	89	102	9.5028
(((((.....)))	chr7:138043986-138044199(+)$1	1	13	26	9.5137
(((((.....)))	chr18:35022928-35023142(+)$1	1	177	190	9.3683
(((((.....)))	chr2:60085846-60086065(+)$1	1	60	73	9.0581
.((((.....)))	chr4:136114326-136114540(-)$1	1	6	19	9.5169
(((((.....)))	chr8:113158905-113159122(+)$1	1	11	24	9.0581
.((((.....)))	chr17:45708291-45708501(-)$1	1	56	69	9.5679
(((((.....)))	chr17:36024713-36024930(+)$1	1	173	186	10.1440
((.((.....)).	chr7:125289540-125289752(-)$1	1	136	149	9.1602
.((((.....)))	chr9:30972107-30972318(-)$1	1	57	70	8.6558
(((((.....)))	chr2:37240692-37240907(-)$1	1	104	117	9.4509
..(((.....)))	chr15:96408920-96409137(-)$1	1	122	135	10.3929
.((((.....)))	chr16:14471998-14472210(+)$1	1	87	100	9.6256
(((((.....)))	chr19:35022004-35022222(+)$1	1	170	183	9.0581
((.((.....)).	chr9:31206703-31206926(+)$1	1	137	150	8.6048
(.(((.....)))	chr1:33834498-33834722(-)$1	1	126	139	10.4450
(((((.....)))	chr5:108244745-108244962(-)$1	1	190	203	9.0581
))(((.....)))	chr12:85499868-85500087(-)$1	1	89	102	9.9279
.((((.....)))	chr11:57866066-57866285(+)$1	1	156	169	8.6558
(((((.....)))	chr7:28066309-28066527(+)$1	1	57	70	9.0581
(((((.....)))	chr10:127789979-127790190(+)$1	1	9	22	9.0581
(.(((.....)))	chr15:79371473-79371691(-)$1	1	23	36	10.2285
...((.....)).	chr9:72590375-72590593(+)$1	1	116	129	9.1288
(.(((.....)))	chr14:52803535-52803749(-)$1	1	177	190	10.4450
))(((.....)))	chr4:98403985-98404207(+)$1	1	97	110	10.2890
((.((.....)).	chr6:29833522-29833733(+)$1	1	176	189	9.1602
((.((.....)).	chr2:168575422-168575646(-)$1	1	34	47	9.1471
..(((.....)))	chr16:94908063-94908273(+)$1	1	45	58	10.5820
..(((.....)))	chr17:88383880-88384094(+)$1	1	106	119	10.5820
..(((.....)))	chr7:29679169-29679388(-)$1	1	43	56	8.5658
.((((.....)))	chr5:92485239-92485462(-)$1	1	156	169	9.5538
).(((.....)))	chr8:63406050-63406266(-)$1	1	200	213	9.2807
.((((.....)))	chr15:76720521-76720741(+)$1	1	75	88	9.6256
.((((.....).)	chr11:51517754-51517970(-)$1	1	81	94	9.8073
(((((.....)))	chr2:29029073-29029292(+)$1	1	76	89	8.5400
))(((.....)))	chr9:66220257-66220474(+)$1	1	150	163	10.1440
).(((.....)))	chr7:34942252-34942466(-)$1	1	116	129	9.4084
..(((.....)))	chr16:43898146-43898360(+)$1	1	1	14	8.5658
(.(((.....)))	chr7:30562325-30562541(+)$1	1	67	80	10.2814
(((((.....)))	chrX:12733640-12733859(+)$1	1	128	141	9.4984
(.(((.....)))	chr15:102164526-102164736(+)$1	1	116	129	10.3975
(((((.....)))	chr11:82842529-82842748(-)$1	1	23	36	8.4560
(((((.....)))	chr1:182517312-182517525(+)$1	1	18	31	9.0581
(.(((.....)))	chr4:44038234-44038453(+)$1	1	188	201	10.4466
.((((.....)))	chr5:102336495-102336705(-)$1	1	62	75	9.6256
(..((.....)).	chr11:29607444-29607667(+)$1	1	87	100	8.8702
..(((.....)))	chr11:102171723-102171942(-)$1	1	130	143	8.5658
(..((.....)).	chr17:20707265-20707481(-)$1	1	177	190	8.9590
(((((.....)))	chr6:100811330-100811543(+)$1	1	188	201	9.0581
..(((.....)))	chr5:45894552-45894768(+)$1	1	89	102	10.5820
..(((.....)))	chrX:148674481-148674697(+)$1	1	81	94	10.5820
(.(((.....)))	chr17:21723591-21723802(+)$1	1	106	119	10.3174
((.((.....)).	chr13:21842235-21842459(-)$1	1	63	76	8.6596
(((((.....)))	chr19:46358458-46358670(+)$1	1	131	144	9.3683
(((((.....)))	chr7:125346461-125346681(-)$1	1	122	135	8.4560
..(((.....)))	chr4:141261838-141262059(-)$1	1	42	55	8.5658
((.((.....)).	chr11:84204963-84205182(+)$1	1	59	72	9.1602
.((((.....)))	chr13:98015176-98015388(+)$1	1	176	189	9.5538
..(((.....)))	chr2:168582082-168582300(-)$1	1	88	101	10.3929
(.(((.....)))	chr8:98252932-98253147(-)$1	1	48	61	10.2285
(.(((.....)))	chr9:95766927-95767140(+)$1	1	14	27	10.3975
.((((.....)))	chr4:48481455-48481673(-)$1	1	187	200	9.5679
))(((.....)))	chr1:44230994-44231215(+)$1	1	20	33	10.2114
(((((.....)))	chrM:5339-5561(+)$1	1	95	108	8.5400
((.((.....)).	chr11:83594615-83594839(+)$1	1	175	188	9.1602
(((((.....)))	chr13:58496910-58497128(-)$1	1	195	208	9.0581
(.(((.....)))	chrX:108773314-108773532(-)$1	1	191	204	10.3975

#PSSM
e : 0.20	c : 0.16	! : 0.09	d : 0.08	: : 0.08	" : 0.06	g : 0.05	f : 0.05	b : 0.05	[ : 0.04	h : 0.04	= : 0.01	# : 0.01	i : 0.01	a : 0.01	
d : 0.21	e : 0.15	[ : 0.13	c : 0.10	! : 0.08	: : 0.08	g : 0.05	" : 0.04	f : 0.04	h : 0.04	= : 0.01	i : 0.01	b : 0.01	
c : 0.39	d : 0.19	e : 0.13	[ : 0.10	g : 0.05	h : 0.02	f : 0.02	! : 0.02	= : 0.01	" : 0.01	
c : 0.38	d : 0.19	b : 0.15	e : 0.13	g : 0.04	[ : 0.02	h : 0.02	f : 0.02	= : 0.01	
c : 0.36	d : 0.19	b : 0.15	e : 0.13	a : 0.04	g : 0.04	h : 0.02	f : 0.02	= : 0.01	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
c : 0.36	d : 0.19	b : 0.15	e : 0.13	a : 0.04	g : 0.04	h : 0.02	f : 0.02	= : 0.01	
c : 0.36	d : 0.19	b : 0.15	e : 0.13	] : 0.04	g : 0.04	h : 0.02	f : 0.02	= : 0.01	
c : 0.39	d : 0.19	e : 0.13	] : 0.09	g : 0.05	2 : 0.04	h : 0.02	f : 0.02	= : 0.01	3 : 0.01	

#score	692.0403390803806
#seq	73
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_CDS_m3_run1.txt

#BEAR
gggbbpppppppbb]ggg	chr10:127521370-127521599(+)$1	229	206	224	12.7975
[ddddpppppppddddcc	chr11:87863347-87863702(+)$1	355	295	313	13.3496
fffffpppppppffffff	chr13:24895185-24895412(+)$1	227	66	84	12.5014
dddddpppppppdddd]d	chr7:125355936-125356177(-)$1	241	112	130	13.1088
##cccpppppppccceee	chr1:135500518-135500749(-)$1	231	135	153	13.7636
eeeeepppppppeeeee3	chr14:57575604-57575841(+)$1	237	176	194	14.4968
""cccpppppppccc333	chr17:66184336-66184569(+)$1	233	10	28	13.9597
fffffpppppppffffff	chr11:53086235-53086463(-)$1	228	67	85	12.5014
eeeeerrrrrrrrreeee	chr4:141073023-141073269(-)$1	246	37	55	10.8971
eeeeerrrrrrrrreeee	chr15:101919289-101919520(+)$1	231	33	51	10.8971
eeeeepppppppeeeee:	chr4:130309919-130310141(+)$1	222	45	63	13.5476
!ddddpppppppddddbb	chr17:23956682-23956924(+)$1	242	105	123	12.8345
eeeeerrrrrrrrreeee	chr5:152445395-152445632(-)$1	237	194	212	10.8971
c[cccpppppppccc]cc	chr11:50196073-50196300(+)$1	227	132	150	13.5432
eeeeerrrrrrrrreeee	chr16:23113139-23113389(+)$1	250	192	210	10.8971
g[cccpppppppccc]gg	chr1:55056857-55057087(-)$1	230	39	57	13.6259
eeeeerrrrrrrrreeee	chr19:59389660-59389882(-)$1	222	69	87	10.8971
%ddddpppppppddddgg	chr14:17262821-17263048(+)$1	227	158	176	12.7080
!a[bbpppppppbba22c	chr7:13621102-13621341(-)$1	239	35	53	12.8037
!ddddpppppppdddd44	chr7:72459683-72459906(-)$1	223	23	41	13.5715
fffffpppppppffffff	chr15:43094115-43094343(-)$1	228	46	64	12.5014
c[cccpppppppccc]cc	chr11:53225416-53225639(+)$1	223	22	40	13.5432
[a[bbpppppppbb]a]d	chr8:8689914-8690156(-)$1	242	191	209	12.8533
eeeeepppppppeeeee]	chr6:148753101-148753343(-)$1	242	109	127	14.3654
c[cccpppppppccc22c	chr11:32631242-32631474(+)$1	232	95	113	13.4170
!ddddpppppppdddd22	chr17:33814217-33814465(-)$1	248	189	207	13.2070
gggggpppppppgggggg	chr11:106643122-106643351(-)$1	229	66	84	13.0116
eeeeepppppppeeeee]	chr2:5950374-5950609(+)$1	235	62	80	14.3654
=====ppppppp======	chr11:75565291-75565537(+)$1	246	78	96	13.3871
eeeeepppppppeeeee>	chr5:107047283-107047512(-)$1	229	172	190	14.2687
eeeeepppppppeeeeed	chr19:46107650-46107901(-)$1	251	144	162	14.2787
[ddddpppppppddddbb	chr9:25094222-25094453(+)$1	231	20	38	12.7938
eeeeepppppppeeeeec	chr13:112223687-112223947(-)$1	260	39	57	14.3900
eeeeerrrrrrrrreeee	chr7:54060320-54060543(+)$1	223	31	49	10.8971
eeebbpppppppbb]eee	chr19:36923712-36923937(+)$1	225	186	204	13.5101
&ddddpppppppdddd44	chr2:125668083-125668318(-)$1	235	192	210	12.8053
eee[apppppppa]eeee	chr2:32038542-32038772(+)$1	230	49	67	13.7905
$$cccpppppppccc666	chr11:86614387-86614610(-)$1	223	85	103	11.8263
eeeeerrrrrrrrreeee	chr4:141073089-141073325(-)$1	236	112	130	10.8971
eeeeerrrrrrrrreeee	chr19:46141651-46141876(+)$1	225	184	202	10.8971
dd[bbpppppppbb]ddd	chr18:32371671-32371891(+)$1	220	95	113	12.5267
eeeeepppppppeeeeed	chr1:135033147-135033409(+)$1	262	88	106	14.2787
"""bbpppppppbb333f	chr9:56952326-56952564(+)$1	238	149	167	13.0051
eeeeepppppppeeeeeG	chr8:82298932-82299160(+)$1	228	164	182	13.8572
""cccpppppppccc333	chr10:110381399-110381622(-)$1	223	135	153	13.9597
eeeeepppppppeeeee2	chr13:107676667-107676889(-)$1	222	11	29	14.2267
cddddpppppppdddd]c	chr2:38870487-38870712(+)$1	225	85	103	13.2784
fffffpppppppffffff	chr11:74497051-74497276(-)$1	225	144	162	12.5014
ddcccpppppppccc:FF	chr11:86520147-86520376(-)$1	229	189	207	11.6350
!!cccpppppppccc333	chr6:120338898-120339139(+)$1	241	168	186	14.1462
c!!bbpppppppbb22cc	chr3:106307380-106307603(-)$1	223	8	26	12.6254
cc[bbpppppppbb]ccc	chr11:51415157-51415407(-)$1	250	13	31	12.6158
eeeeepppppppeeeeeD	chr19:53995615-53995854(+)$1	239	168	186	13.4459
!!cccpppppppccc22b	chr1:136385567-136385795(+)$1	228	84	102	13.4062
c!!bbpppppppbb22cc	chr15:81623349-81623583(+)$1	234	122	140	12.6254
eeeeepppppppeeeee6	chr9:63242332-63242560(-)$1	228	30	48	14.0343

#otherMatches

#Seq PSSM
UGUACACAUGGGGUAAUA	chr10:127521370-127521599(+)$1	229	206	224	12.7975
ACCUUAUACUAGAAGGCG	chr11:87863347-87863702(+)$1	355	295	313	13.3496
GGGGGACCCAAACUCCCG	chr13:24895185-24895412(+)$1	227	66	84	12.5014
CUGGGGAAAAUACUUAUG	chr7:125355936-125356177(-)$1	241	112	130	13.1088
AAAGUGUUUCCAACUAGC	chr1:135500518-135500749(-)$1	231	135	153	13.7636
UACUUUAACACUAAGUAU	chr14:57575604-57575841(+)$1	237	176	194	14.4968
UUCUCCAUCCAUGAGCUU	chr17:66184336-66184569(+)$1	233	10	28	13.9597
UCUAUUUUUGCCGUAGAG	chr11:53086235-53086463(-)$1	228	67	85	12.5014
GCUUCAGAUAACAGGGAG	chr4:141073023-141073269(-)$1	246	37	55	10.8971
UUUGGAAGUGGGUACCGG	chr15:101919289-101919520(+)$1	231	33	51	10.8971
AUAGCAGCCUUAGCUAUU	chr4:130309919-130310141(+)$1	222	45	63	13.5476
GGUCCAGAUCCAGGACUC	chr17:23956682-23956924(+)$1	242	105	123	12.8345
UAUCCUGGGACUUUGGGU	chr5:152445395-152445632(-)$1	237	194	212	10.8971
CUUAUGGUGGAGGUGUGU	chr11:50196073-50196300(+)$1	227	132	150	13.5432
UCUACAAUACUACAGUGG	chr16:23113139-23113389(+)$1	250	192	210	10.8971
GAUAACCGAAACUUAAUU	chr1:55056857-55057087(-)$1	230	39	57	13.6259
GUUCAUUGCACACUUGAG	chr19:59389660-59389882(-)$1	222	69	87	10.8971
AGUGCCCAAAGAGCACGA	chr14:17262821-17263048(+)$1	227	158	176	12.7080
AGCAGCCUCCCACUCACC	chr7:13621102-13621341(-)$1	239	35	53	12.8037
ACAAGUGAUGACCUUGAU	chr7:72459683-72459906(-)$1	223	23	41	13.5715
GUUAAACAGUGCUUAACA	chr15:43094115-43094343(-)$1	228	46	64	12.5014
CAGUGACCAUUCCACAGA	chr11:53225416-53225639(+)$1	223	22	40	13.5432
gcggcuggaggcgcgggg	chr8:8689914-8690156(-)$1	242	191	209	12.8533
GAAGAUGUGAUUUUUUCU	chr6:148753101-148753343(-)$1	242	109	127	14.3654
CAUAGAAUCCAACUGGCG	chr11:32631242-32631474(+)$1	232	95	113	13.4170
ACAAAUAUACCUUUUGAU	chr17:33814217-33814465(-)$1	248	189	207	13.2070
AAUAUGGAAGUAAUGUUG	chr11:106643122-106643351(-)$1	229	66	84	13.0116
GGUUUGGACAAAAGACCA	chr2:5950374-5950609(+)$1	235	62	80	14.3654
AUUUCCUGCAUAGAAAUG	chr11:75565291-75565537(+)$1	246	78	96	13.3871
UGGUGGAAGUCACAUCAC	chr5:107047283-107047512(-)$1	229	172	190	14.2687
GCUGGAGAACACCCAGUU	chr19:46107650-46107901(-)$1	251	144	162	14.2787
ACUCUUACAGGUGGAGCA	chr9:25094222-25094453(+)$1	231	20	38	12.7938
UACACAACCUAGGUGUAG	chr13:112223687-112223947(-)$1	260	39	57	14.3900
UUUAUUCCAACUCUAUAA	chr7:54060320-54060543(+)$1	223	31	49	10.8971
UUGCAGGAGGAAUGACAA	chr19:36923712-36923937(+)$1	225	186	204	13.5101
UAGUAUUCAGCUUACUUA	chr2:125668083-125668318(-)$1	235	192	210	12.8053
CUCUCUCCUCCUGUGAGG	chr2:32038542-32038772(+)$1	230	49	67	13.7905
UAGCAAAUUCAGUGUCAU	chr11:86614387-86614610(-)$1	223	85	103	11.8263
GUGCUUAUGAACAUAGUG	chr4:141073089-141073325(-)$1	236	112	130	10.8971
UCCAGGACUUGCAACUGG	chr19:46141651-46141876(+)$1	225	184	202	10.8971
GAGUGACAUAGACAAUCC	chr18:32371671-32371891(+)$1	220	95	113	12.5267
CUAGGUAACCUUCCUGGA	chr1:135033147-135033409(+)$1	262	88	106	14.2787
CAAAGGAACGAGCUACAG	chr9:56952326-56952564(+)$1	238	149	167	13.0051
UAUCCUAUCAUUGGAUAG	chr8:82298932-82299160(+)$1	228	164	182	13.8572
UAUGACCAAAUAUCAGGA	chr10:110381399-110381622(-)$1	223	135	153	13.9597
CUUCUUUUUACUAGGAGU	chr13:107676667-107676889(-)$1	222	11	29	14.2267
CACAGGCCUUAGCUGUAG	chr2:38870487-38870712(+)$1	225	85	103	13.2784
UCAGGAUGGCACUCUGAU	chr11:74497051-74497276(-)$1	225	144	162	12.5014
CAGGCUGCCAAUGCCAGC	chr11:86520147-86520376(-)$1	229	189	207	11.6350
UGUGAGUAGCUAUCAAUU	chr6:120338898-120339139(+)$1	241	168	186	14.1462
GUUCAUUGAUUUUGUUCU	chr3:106307380-106307603(-)$1	223	8	26	12.6254
AGGUCAGAGUCAGAGUUG	chr11:51415157-51415407(-)$1	250	13	31	12.6158
CUGUAGAUUGUGUACAGG	chr19:53995615-53995854(+)$1	239	168	186	13.4459
UAUGUAGGGGCCACAGUG	chr1:136385567-136385795(+)$1	228	84	102	13.4062
GCGGCAAGAACAGCAACA	chr15:81623349-81623583(+)$1	234	122	140	12.6254
GAUUAUAAGUACUGAUCU	chr9:63242332-63242560(-)$1	228	30	48	14.0343

#DB
(((((.......)).)))	chr10:127521370-127521599(+)$1	1	206	224	12.7975
.((((.......))))))	chr11:87863347-87863702(+)$1	1	295	313	13.3496
(((((.......))))))	chr13:24895185-24895412(+)$1	1	66	84	12.5014
(((((.......)))).)	chr7:125355936-125356177(-)$1	1	112	130	13.1088
..(((.......))))))	chr1:135500518-135500749(-)$1	1	135	153	13.7636
(((((.......))))).	chr14:57575604-57575841(+)$1	1	176	194	14.4968
..(((.......)))...	chr17:66184336-66184569(+)$1	1	10	28	13.9597
(((((.......))))))	chr11:53086235-53086463(-)$1	1	67	85	12.5014
(((((.........))))	chr4:141073023-141073269(-)$1	1	37	55	10.8971
(((((.........))))	chr15:101919289-101919520(+)$1	1	33	51	10.8971
(((((.......))))).	chr4:130309919-130310141(+)$1	1	45	63	13.5476
.((((.......))))))	chr17:23956682-23956924(+)$1	1	105	123	12.8345
(((((.........))))	chr5:152445395-152445632(-)$1	1	194	212	10.8971
(.(((.......))).))	chr11:50196073-50196300(+)$1	1	132	150	13.5432
(((((.........))))	chr16:23113139-23113389(+)$1	1	192	210	10.8971
(.(((.......))).))	chr1:55056857-55057087(-)$1	1	39	57	13.6259
(((((.........))))	chr19:59389660-59389882(-)$1	1	69	87	10.8971
.((((.......))))))	chr14:17262821-17263048(+)$1	1	158	176	12.7080
.(.((.......)))..)	chr7:13621102-13621341(-)$1	1	35	53	12.8037
.((((.......))))..	chr7:72459683-72459906(-)$1	1	23	41	13.5715
(((((.......))))))	chr15:43094115-43094343(-)$1	1	46	64	12.5014
(.(((.......))).))	chr11:53225416-53225639(+)$1	1	22	40	13.5432
.(.((.......)).).)	chr8:8689914-8690156(-)$1	1	191	209	12.8533
(((((.......))))).	chr6:148753101-148753343(-)$1	1	109	127	14.3654
(.(((.......)))..)	chr11:32631242-32631474(+)$1	1	95	113	13.4170
.((((.......))))..	chr17:33814217-33814465(-)$1	1	189	207	13.2070
(((((.......))))))	chr11:106643122-106643351(-)$1	1	66	84	13.0116
(((((.......))))).	chr2:5950374-5950609(+)$1	1	62	80	14.3654
(((((.......))))))	chr11:75565291-75565537(+)$1	1	78	96	13.3871
(((((.......))))).	chr5:107047283-107047512(-)$1	1	172	190	14.2687
(((((.......)))))(	chr19:46107650-46107901(-)$1	1	144	162	14.2787
.((((.......))))))	chr9:25094222-25094453(+)$1	1	20	38	12.7938
(((((.......)))))(	chr13:112223687-112223947(-)$1	1	39	57	14.3900
(((((.........))))	chr7:54060320-54060543(+)$1	1	31	49	10.8971
(((((.......)).)))	chr19:36923712-36923937(+)$1	1	186	204	13.5101
.((((.......))))..	chr2:125668083-125668318(-)$1	1	192	210	12.8053
(((.(.......).))))	chr2:32038542-32038772(+)$1	1	49	67	13.7905
..(((.......)))...	chr11:86614387-86614610(-)$1	1	85	103	11.8263
(((((.........))))	chr4:141073089-141073325(-)$1	1	112	130	10.8971
(((((.........))))	chr19:46141651-46141876(+)$1	1	184	202	10.8971
((.((.......)).)))	chr18:32371671-32371891(+)$1	1	95	113	12.5267
(((((.......))))))	chr1:135033147-135033409(+)$1	1	88	106	14.2787
...((.......))...)	chr9:56952326-56952564(+)$1	1	149	167	13.0051
(((((.......))))))	chr8:82298932-82299160(+)$1	1	164	182	13.8572
..(((.......)))...	chr10:110381399-110381622(-)$1	1	135	153	13.9597
(((((.......))))).	chr13:107676667-107676889(-)$1	1	11	29	14.2267
(((((.......)))).)	chr2:38870487-38870712(+)$1	1	85	103	13.2784
(((((.......))))))	chr11:74497051-74497276(-)$1	1	144	162	12.5014
))(((.......))).))	chr11:86520147-86520376(-)$1	1	189	207	11.6350
..(((.......)))...	chr6:120338898-120339139(+)$1	1	168	186	14.1462
(..((.......))..))	chr3:106307380-106307603(-)$1	1	8	26	12.6254
((.((.......)).)))	chr11:51415157-51415407(-)$1	1	13	31	12.6158
(((((.......))))))	chr19:53995615-53995854(+)$1	1	168	186	13.4459
..(((.......)))..)	chr1:136385567-136385795(+)$1	1	84	102	13.4062
(..((.......))..))	chr15:81623349-81623583(+)$1	1	122	140	12.6254
(((((.......))))).	chr9:63242332-63242560(-)$1	1	30	48	14.0343

#PSSM
e : 0.39	c : 0.12	! : 0.10	f : 0.07	g : 0.05	[ : 0.05	d : 0.05	" : 0.05	# : 0.01	% : 0.01	= : 0.01	& : 0.01	$ : 0.01	
e : 0.39	d : 0.19	f : 0.07	[ : 0.07	! : 0.07	" : 0.05	g : 0.03	a : 0.03	# : 0.01	= : 0.01	$ : 0.01	c : 0.01	
e : 0.39	c : 0.19	d : 0.16	f : 0.07	[ : 0.07	g : 0.03	! : 0.03	= : 0.01	" : 0.01	
e : 0.35	c : 0.19	b : 0.16	d : 0.16	f : 0.07	g : 0.01	= : 0.01	[ : 0.01	
e : 0.35	c : 0.19	b : 0.16	d : 0.16	f : 0.07	g : 0.01	= : 0.01	a : 0.01	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
e : 0.21	c : 0.19	b : 0.16	d : 0.16	r : 0.14	f : 0.07	g : 0.01	= : 0.01	a : 0.01	
e : 0.21	c : 0.19	b : 0.16	d : 0.16	r : 0.14	f : 0.07	g : 0.01	= : 0.01	] : 0.01	
e : 0.37	c : 0.19	d : 0.16	] : 0.08	f : 0.07	2 : 0.03	a : 0.01	g : 0.01	= : 0.01	3 : 0.01	
e : 0.41	d : 0.17	2 : 0.08	f : 0.07	3 : 0.07	] : 0.05	g : 0.03	a : 0.01	= : 0.01	6 : 0.01	: : 0.01	c : 0.01	
e : 0.41	c : 0.10	g : 0.07	f : 0.07	3 : 0.07	2 : 0.07	] : 0.05	b : 0.03	4 : 0.03	= : 0.01	6 : 0.01	d : 0.01	F : 0.01	
e : 0.19	c : 0.17	f : 0.08	d : 0.08	g : 0.07	3 : 0.07	b : 0.05	4 : 0.03	] : 0.03	2 : 0.03	6 : 0.03	: : 0.01	= : 0.01	> : 0.01	G : 0.01	F : 0.01	D : 0.01	

#score	726.7766091848666
#seq	56
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_CDS_m3_run1.txt

#BEAR
i[cccvvvvvvvvvvvvvcc	chr7:109334379-109334599(-)$1	220	106	126	20.0721
!eeeeettttttttttteee	chr9:44759981-44760199(-)$1	218	125	145	18.0172
fffffftttttttttttfff	chr7:20397644-20397862(-)$1	218	13	33	17.4819
ee[bbwwwwwwwwwwwwwwb	chr4:147262679-147262894(-)$1	215	14	34	19.4020
dddd^^^^^^^^^^^^^^^^	chr11:79053706-79053920(-)$1	214	56	76	16.0425
dddbbuuuuuuuuuuuubb]	chr7:90904475-90904691(+)$1	216	119	139	19.5813
[dddd^^^^^^^^^^^^^^^	chr4:98403985-98404207(+)$1	222	119	139	16.3316
gggggxxxxxxxxxxxxxxx	chr6:100811330-100811543(+)$1	213	124	144	17.1656
ee[bbyyyyyyyyyyyyyyy	chr11:75315974-75316190(+)$1	216	135	155	20.8480
eeeeettttttttttteeee	chr9:31206703-31206926(+)$1	223	27	47	17.8587
&&ccctttttttttttccc9	chrX:71025877-71026093(-)$1	216	18	38	16.5987
ggggggtttttttttttggg	chr4:40923559-40923781(+)$1	222	86	106	17.7269
::cccuuuuuuuuuuuuccc	chr5:137743370-137743583(-)$1	213	152	172	18.3998
=====^^^^^^^^^^^^^^^	chr19:7608364-7608575(+)$1	211	128	148	16.5279
gggggvvvvvvvvvvvvvgg	chr8:93575480-93575697(+)$1	217	171	191	19.7184
ggggggtttttttttttggg	chr9:95766927-95767140(+)$1	213	87	107	17.7269
fffffyyyyyyyyyyyyyyy	chr16:13792995-13793214(+)$1	219	164	184	20.9693
"""bbuuuuuuuuuuuubbh	chr11:96818829-96819039(-)$1	210	119	139	19.3032
fffffwwwwwwwwwwwwwwf	chr10:127548089-127548304(+)$1	215	131	151	19.5935
!!ddddtttttttttttddd	chrX:131254895-131255112(+)$1	217	133	153	17.7434
hhhhhuuuuuuuuuuuuhhh	chr8:87549042-87549261(-)$1	219	59	79	18.2138
iiiiiyyyyyyyyyyyyyyy	chr16:30333881-30334092(-)$1	211	142	162	21.0719
fffff^^^^^^^^^^^^^^^	chr14:21350934-21351158(-)$1	224	74	94	16.3285
ggggguuuuuuuuuuuuggg	chr2:5950313-5950539(+)$1	226	152	172	20.0810
bbyyyyyyyyyyyyyyyybb	chr8:69413061-69413279(+)$1	218	154	174	18.2832
[ddddtttttttttttdddd	chrX:7444777-7444992(+)$1	215	16	36	17.6546
=====vvvvvvvvvvvvv==	chr7:106628302-106628520(-)$1	218	174	194	19.8288
cccccuuuuuuuuuuuuccc	chr17:21723591-21723802(+)$1	211	183	203	20.4363
eeeeewwwwwwwwwwwwwwe	chr17:79371765-79371984(-)$1	219	67	87	19.6836
dddd^^^^^^^^^^^^^^^^	chrM:4290-4508(+)$1	218	63	83	16.0425
g!!bbyyyyyyyyyyyyyyy	chr19:5901137-5901353(-)$1	216	153	173	20.9411
b[ccctttttttttttccc]	chr4:128877968-128878178(+)$1	210	104	124	18.1661
dddd^^^^^^^^^^^^^^^^	chrM:9784-10002(+)$1	218	141	161	16.0425
fffffvvvvvvvvvvvvvff	chr10:117261600-117261811(-)$1	211	52	72	19.4368
!eeeeettttttttttteee	chr11:102171723-102171942(-)$1	219	162	182	18.0172
!!ccc^^^^^^^^^^^^^^^	chr5:122080024-122080234(-)$1	210	124	144	16.7215
ii[bb^^^^^^^^^^^^^^^	chr5:108244745-108244962(-)$1	217	13	33	16.2539
eeeeeuuuuuuuuuuuueee	chr11:72258248-72258458(+)$1	210	33	53	20.0404
fffffuuuuuuuuuuuufff	chr13:23673361-23673598(+)$1	237	173	193	19.7574
fffffvvvvvvvvvvvvvff	chr5:108535655-108535870(+)$1	215	79	99	19.4368
ff[bbuuuuuuuuuuuubb]	chr9:95385941-95386152(-)$1	211	146	166	19.7874
ddddvvvvvvvvvvvvvddd	chr3:123045954-123046178(+)$1	224	35	55	18.5179
[ddddxxxxxxxxxxxxxxx	chrM:6943-7170(+)$1	227	70	90	16.9899
fffff^^^^^^^^^^^^^^^	chr2:126656906-126657130(-)$1	224	81	101	16.3285
ddddxxxxxxxxxxxxxxxd	chrM:6912-7138(+)$1	226	102	122	16.3411
fffff^^^^^^^^^^^^^^^	chrX:133268424-133268642(-)$1	218	166	186	16.3285
fffff^^^^^^^^^^^^^^^	chr1:71697148-71697359(-)$1	211	99	119	16.3285
eeeeettttttttttteeee	chr6:8176772-8176989(+)$1	217	58	78	17.8587
cccbb^^^^^^^^^^^^^^^	chr10:40971530-40971749(-)$1	219	133	153	16.1328
eeeee^^^^^^^^^^^^^^^	chr12:111932328-111932540(-)$1	212	24	44	16.3197
eeeeettttttttttteeee	chr16:62811743-62811957(-)$1	214	176	196	17.8587
$$ccctttttttttttccc4	chr3:32361403-32361617(+)$1	214	59	79	18.1098
$ddddtttttttttttdddd	chr17:35972579-35972789(-)$1	210	148	168	17.3232
ddd[bbtttttttttttbbd	chr15:12832311-12832525(+)$1	214	25	45	17.3517
eeeeexxxxxxxxxxxxxxx	chr12:105934479-105934693(-)$1	214	188	208	16.9780
fffffyyyyyyyyyyyyyyy	chr5:34186123-34186342(+)$1	219	125	145	20.9693
fffccctttttttttttccc	chr6:67222769-67222984(+)$1	215	149	169	18.3405
hhhhhuuuuuuuuuuuuhhh	chr17:23944953-23945171(+)$1	218	151	171	18.2138
!!cccuuuuuuuuuuuuccc	chr1:95321808-95322031(-)$1	223	45	65	20.7134
!!ccc^^^^^^^^^^^^^^^	chr2:24781675-24781893(-)$1	218	76	96	16.7215
[dddduuuuuuuuuuuuddd	chr2:179926826-179927049(-)$1	223	43	63	19.8992

#otherMatches

#Seq PSSM
CACCACGGCUGGCUUAUUUG	chr7:109334379-109334599(-)$1	220	106	126	20.0721
AGGUACCUCCUGAUAAUGUG	chr9:44759981-44760199(-)$1	218	125	145	18.0172
GCUGUGGUCCAGAAUAACAU	chr7:20397644-20397862(-)$1	218	13	33	17.4819
AUAGUUAUUUCCUUCCUCCA	chr4:147262679-147262894(-)$1	215	14	34	19.4020
GAAGUCCAAAAACUGCCUGU	chr11:79053706-79053920(-)$1	214	56	76	16.0425
GAGGCAAGAAUAUUAAGGCU	chr7:90904475-90904691(+)$1	216	119	139	19.5813
GGUCGACAAAAUCAAAAACA	chr4:98403985-98404207(+)$1	222	119	139	16.3316
AAACUAUACAGGAACAGACA	chr6:100811330-100811543(+)$1	213	124	144	17.1656
AUUACACCACAGACAACAUG	chr11:75315974-75316190(+)$1	216	135	155	20.8480
CAGCCUUGUAUGAUUUGGCU	chr9:31206703-31206926(+)$1	223	27	47	17.8587
AAGCCUUUUGUCCCCUGGCC	chrX:71025877-71026093(-)$1	216	18	38	16.5987
CAUGGCCUUCAGAAUCAGCC	chr4:40923559-40923781(+)$1	222	86	106	17.7269
ACGCUACAAUGACUACAAGC	chr5:137743370-137743583(-)$1	213	152	172	18.3998
UGGGAGACCACCUGCUGAUA	chr19:7608364-7608575(+)$1	211	128	148	16.5279
UUUUGAUGUACAGAAAAACA	chr8:93575480-93575697(+)$1	217	171	191	19.7184
CAUUUUAUGCAGCCUUGAAA	chr9:95766927-95767140(+)$1	213	87	107	17.7269
CUAUAUUUUUUCCUCUAUUU	chr16:13792995-13793214(+)$1	219	164	184	20.9693
CCAGCAAAAAACAUUCAGCU	chr11:96818829-96819039(-)$1	210	119	139	19.3032
AGUUUUUUCACCUCCCCUCA	chr10:127548089-127548304(+)$1	215	131	151	19.5935
CUUUUCAAGACUCUAAAGGA	chrX:131254895-131255112(+)$1	217	133	153	17.7434
GUGGUGCGCCCCGAUUAAUC	chr8:87549042-87549261(-)$1	219	59	79	18.2138
GGGCGCUCCUCUUCUCCGUC	chr16:30333881-30334092(-)$1	211	142	162	21.0719
AGCUGUUCCUUUUCCCCCAA	chr14:21350934-21351158(-)$1	224	74	94	16.3285
UUGAUAUAGAUUACAUGAUC	chr2:5950313-5950539(+)$1	226	152	172	20.0810
GCAUAACUUUccacuuccgc	chr8:69413061-69413279(+)$1	218	154	174	18.2832
UGAAGAACGCUGAUUACUUC	chrX:7444777-7444992(+)$1	215	16	36	17.6546
AUGCCUAGGGCAGAGAGUGG	chr7:106628302-106628520(-)$1	218	174	194	19.8288
UGCACCUUAUAAUACAAGUG	chr17:21723591-21723802(+)$1	211	183	203	20.4363
GCGUGGGGACUGAUGCAGAC	chr17:79371765-79371984(-)$1	219	67	87	19.6836
GCUACUCAACUCUACUAUCA	chrM:4290-4508(+)$1	218	63	83	16.0425
UACUCAAAAUACUUUAUCCC	chr19:5901137-5901353(-)$1	216	153	173	20.9411
AGUGGUCUGCUGUACCCCGG	chr4:128877968-128878178(+)$1	210	104	124	18.1661
UAGGGACACUUAUAUUUCGC	chrM:9784-10002(+)$1	218	141	161	16.0425
AAAGAUUGUUUUCCUUCUUC	chr10:117261600-117261811(-)$1	211	52	72	19.4368
UGGGCGACCUACCAAGCCGC	chr11:102171723-102171942(-)$1	219	162	182	18.0172
UCAGGUACCAUGUUUGUAUC	chr5:122080024-122080234(-)$1	210	124	144	16.7215
AAGAGUACACAUUUAGCUUU	chr5:108244745-108244962(-)$1	217	13	33	16.2539
GGUGGCCUUUACAACCAUCA	chr11:72258248-72258458(+)$1	210	33	53	20.0404
UUCUGCGCGACAACAUCCAG	chr13:23673361-23673598(+)$1	237	173	193	19.7574
AUGAUGAAGGCAAAGAAGAU	chr5:108535655-108535870(+)$1	215	79	99	19.4368
CAGAGAAAUCAACAAUCCUA	chr9:95385941-95386152(-)$1	211	146	166	19.7874
GUUGGUUUCAUCACAUACAA	chr3:123045954-123046178(+)$1	224	35	55	18.5179
UGGCCUACCCAUUCCAACUU	chrM:6943-7170(+)$1	227	70	90	16.9899
AUCACUUUAAUUGAUAUAGG	chr2:126656906-126657130(-)$1	224	81	101	16.3285
GGCCUACCCAUUCCAACUUG	chrM:6912-7138(+)$1	226	102	122	16.3411
GAAGUUGUAGGAGGGAUAAA	chrX:133268424-133268642(-)$1	218	166	186	16.3285
CUUUGACAAAUACACUGGGA	chr1:71697148-71697359(-)$1	211	99	119	16.3285
UUUUCCCCCCCAGUAUGAAA	chr6:8176772-8176989(+)$1	217	58	78	17.8587
CGGGUAAAGACCUACAGAAA	chr10:40971530-40971749(-)$1	219	133	153	16.1328
AGGCUgaagaaaaggaagag	chr12:111932328-111932540(-)$1	212	24	44	16.3197
GAUGCCUUAAGUGAACGCAU	chr16:62811743-62811957(-)$1	214	176	196	17.8587
GAUGUUCUUCCCUCUUACAG	chr3:32361403-32361617(+)$1	214	59	79	18.1098
CUACGACAUCUGCUUCCGUA	chr17:35972579-35972789(-)$1	210	148	168	17.3232
CAGUGUCCACCUGUACUACC	chr15:12832311-12832525(+)$1	214	25	45	17.3517
UACCACUACAACACUAUCAC	chr12:105934479-105934693(-)$1	214	188	208	16.9780
UCAGAAGAAAACGAACAAAA	chr5:34186123-34186342(+)$1	219	125	145	20.9693
GAUACUGAAAAUAAGUAAGU	chr6:67222769-67222984(+)$1	215	149	169	18.3405
UGGGGCCAAGGAAGAAACCC	chr17:23944953-23945171(+)$1	218	151	171	18.2138
AAGUCAACAGAAUCAAAGAC	chr1:95321808-95322031(-)$1	223	45	65	20.7134
UUAUCCAUAUCGACUAUUAC	chr2:24781675-24781893(-)$1	218	76	96	16.7215
AGCAGCUCAUCUCCAUUCUG	chr2:179926826-179927049(-)$1	223	43	63	19.8992

#DB
(.(((.............))	chr7:109334379-109334599(-)$1	1	106	126	20.0721
.(((((...........)))	chr9:44759981-44760199(-)$1	1	125	145	18.0172
((((((...........)))	chr7:20397644-20397862(-)$1	1	13	33	17.4819
((.((..............)	chr4:147262679-147262894(-)$1	1	14	34	19.4020
((((................	chr11:79053706-79053920(-)$1	1	56	76	16.0425
(((((............)).	chr7:90904475-90904691(+)$1	1	119	139	19.5813
.((((...............	chr4:98403985-98404207(+)$1	1	119	139	16.3316
(((((...............	chr6:100811330-100811543(+)$1	1	124	144	17.1656
((.((...............	chr11:75315974-75316190(+)$1	1	135	155	20.8480
(((((...........))))	chr9:31206703-31206926(+)$1	1	27	47	17.8587
..(((...........))).	chrX:71025877-71026093(-)$1	1	18	38	16.5987
((((((...........)))	chr4:40923559-40923781(+)$1	1	86	106	17.7269
..(((............)))	chr5:137743370-137743583(-)$1	1	152	172	18.3998
(((((...............	chr19:7608364-7608575(+)$1	1	128	148	16.5279
(((((.............))	chr8:93575480-93575697(+)$1	1	171	191	19.7184
((((((...........)))	chr9:95766927-95767140(+)$1	1	87	107	17.7269
(((((...............	chr16:13792995-13793214(+)$1	1	164	184	20.9693
...((............)))	chr11:96818829-96819039(-)$1	1	119	139	19.3032
(((((..............)	chr10:127548089-127548304(+)$1	1	131	151	19.5935
..((((...........)))	chrX:131254895-131255112(+)$1	1	133	153	17.7434
(((((............)))	chr8:87549042-87549261(-)$1	1	59	79	18.2138
(((((...............	chr16:30333881-30334092(-)$1	1	142	162	21.0719
(((((...............	chr14:21350934-21351158(-)$1	1	74	94	16.3285
(((((............)))	chr2:5950313-5950539(+)$1	1	152	172	20.0810
((................))	chr8:69413061-69413279(+)$1	1	154	174	18.2832
.((((...........))))	chrX:7444777-7444992(+)$1	1	16	36	17.6546
(((((.............))	chr7:106628302-106628520(-)$1	1	174	194	19.8288
(((((............)))	chr17:21723591-21723802(+)$1	1	183	203	20.4363
(((((..............)	chr17:79371765-79371984(-)$1	1	67	87	19.6836
((((................	chrM:4290-4508(+)$1	1	63	83	16.0425
(..((...............	chr19:5901137-5901353(-)$1	1	153	173	20.9411
(.(((...........))).	chr4:128877968-128878178(+)$1	1	104	124	18.1661
((((................	chrM:9784-10002(+)$1	1	141	161	16.0425
(((((.............))	chr10:117261600-117261811(-)$1	1	52	72	19.4368
.(((((...........)))	chr11:102171723-102171942(-)$1	1	162	182	18.0172
..(((...............	chr5:122080024-122080234(-)$1	1	124	144	16.7215
((.((...............	chr5:108244745-108244962(-)$1	1	13	33	16.2539
(((((............)))	chr11:72258248-72258458(+)$1	1	33	53	20.0404
(((((............)))	chr13:23673361-23673598(+)$1	1	173	193	19.7574
(((((.............))	chr5:108535655-108535870(+)$1	1	79	99	19.4368
((.((............)).	chr9:95385941-95386152(-)$1	1	146	166	19.7874
((((.............)))	chr3:123045954-123046178(+)$1	1	35	55	18.5179
.((((...............	chrM:6943-7170(+)$1	1	70	90	16.9899
(((((...............	chr2:126656906-126657130(-)$1	1	81	101	16.3285
((((...............)	chrM:6912-7138(+)$1	1	102	122	16.3411
(((((...............	chrX:133268424-133268642(-)$1	1	166	186	16.3285
(((((...............	chr1:71697148-71697359(-)$1	1	99	119	16.3285
(((((...........))))	chr6:8176772-8176989(+)$1	1	58	78	17.8587
(((((...............	chr10:40971530-40971749(-)$1	1	133	153	16.1328
(((((...............	chr12:111932328-111932540(-)$1	1	24	44	16.3197
(((((...........))))	chr16:62811743-62811957(-)$1	1	176	196	17.8587
..(((...........))).	chr3:32361403-32361617(+)$1	1	59	79	18.1098
.((((...........))))	chr17:35972579-35972789(-)$1	1	148	168	17.3232
(((.((...........)))	chr15:12832311-12832525(+)$1	1	25	45	17.3517
(((((...............	chr12:105934479-105934693(-)$1	1	188	208	16.9780
(((((...............	chr5:34186123-34186342(+)$1	1	125	145	20.9693
((((((...........)))	chr6:67222769-67222984(+)$1	1	149	169	18.3405
(((((............)))	chr17:23944953-23945171(+)$1	1	151	171	18.2138
..(((............)))	chr1:95321808-95322031(-)$1	1	45	65	20.7134
..(((...............	chr2:24781675-24781893(-)$1	1	76	96	16.7215
.((((............)))	chr2:179926826-179927049(-)$1	1	43	63	19.8992

#PSSM
f : 0.21	e : 0.14	d : 0.11	! : 0.09	g : 0.09	[ : 0.06	i : 0.04	= : 0.03	h : 0.03	b : 0.03	c : 0.03	$ : 0.03	& : 0.01	: : 0.01	" : 0.01	
f : 0.21	d : 0.19	e : 0.18	g : 0.08	! : 0.08	[ : 0.03	= : 0.03	h : 0.03	i : 0.03	c : 0.03	& : 0.01	: : 0.01	" : 0.01	b : 0.01	$ : 0.01	
d : 0.21	f : 0.19	c : 0.16	e : 0.14	g : 0.08	[ : 0.06	= : 0.03	h : 0.03	" : 0.01	i : 0.01	y : 0.01	! : 0.01	
f : 0.18	d : 0.18	c : 0.16	e : 0.14	b : 0.13	g : 0.08	= : 0.03	h : 0.03	i : 0.01	y : 0.01	[ : 0.01	
f : 0.18	c : 0.16	e : 0.14	b : 0.14	d : 0.09	g : 0.08	^ : 0.04	= : 0.03	h : 0.03	i : 0.01	y : 0.01	v : 0.01	x : 0.01	
^ : 0.22	u : 0.19	t : 0.13	v : 0.09	y : 0.09	x : 0.06	w : 0.04	e : 0.03	g : 0.03	f : 0.01	d : 0.01	b : 0.01	c : 0.01	
t : 0.26	^ : 0.22	u : 0.19	v : 0.09	y : 0.09	x : 0.06	w : 0.04	
t : 0.26	^ : 0.22	u : 0.19	v : 0.09	y : 0.09	x : 0.06	w : 0.04	
t : 0.26	^ : 0.22	u : 0.19	v : 0.09	y : 0.09	x : 0.06	w : 0.04	
t : 0.26	^ : 0.22	u : 0.19	v : 0.09	y : 0.09	x : 0.06	w : 0.04	
t : 0.26	^ : 0.22	u : 0.19	v : 0.09	y : 0.09	x : 0.06	w : 0.04	
t : 0.26	^ : 0.22	u : 0.19	v : 0.09	y : 0.09	x : 0.06	w : 0.04	
t : 0.26	^ : 0.22	u : 0.19	v : 0.09	y : 0.09	x : 0.06	w : 0.04	
t : 0.26	^ : 0.22	u : 0.19	v : 0.09	y : 0.09	x : 0.06	w : 0.04	
t : 0.26	^ : 0.22	u : 0.19	v : 0.09	y : 0.09	x : 0.06	w : 0.04	
t : 0.26	^ : 0.22	u : 0.19	v : 0.09	y : 0.09	x : 0.06	w : 0.04	
^ : 0.22	u : 0.19	t : 0.13	v : 0.09	y : 0.09	x : 0.06	w : 0.04	e : 0.04	c : 0.04	d : 0.03	
^ : 0.22	c : 0.11	e : 0.09	y : 0.09	v : 0.08	d : 0.08	b : 0.06	x : 0.06	w : 0.04	g : 0.04	f : 0.03	h : 0.03	
^ : 0.22	c : 0.13	e : 0.09	b : 0.08	y : 0.08	d : 0.08	f : 0.06	x : 0.06	g : 0.06	w : 0.04	h : 0.03	= : 0.01	
^ : 0.22	e : 0.11	d : 0.11	c : 0.08	f : 0.08	y : 0.08	g : 0.06	] : 0.04	x : 0.04	h : 0.04	b : 0.03	9 : 0.01	= : 0.01	4 : 0.01	

#score	1112.9622758346454
#seq	61
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_UTR_m2_run2.txt

#BEAR
ffff[ccctttttttttttccc]ff	chr4:73897740-73897956(+)$1	216	55	80	23.9666
eeeee[avvvvvvvvvvvvva]eee	chr10:119526668-119526886(-)$1	218	6	31	23.0405
ggggggguuuuuuuuuuuugggggg	chr15:97892646-97892870(-)$1	224	71	96	23.3040
:ggggggguuuuuuuuuuuuggggg	chr17:34258155-34258378(-)$1	223	113	138	22.6789
iiiiiiiuuuuuuuuuuuuiiiiii	chr1:52243017-52243227(-)$1	210	123	148	23.3215
%%%dddduuuuuuuuuuuudddd66	chr19:41330599-41330815(-)$1	216	45	70	20.1569
eeeeewwwwwwwwwwwwwweeeeed	chr11:83216468-83216691(+)$1	223	122	147	20.5870
fffff[bbtttttttttttbb]fff	chrX:148306235-148306449(+)$1	214	87	112	22.7415
[ffffffuuuuuuuuuuuuffffff	chr6:83758098-83758324(-)$1	226	37	62	22.3480
dddd[cccwwwwwwwwwwwwwwccc	chr11:88154674-88154893(-)$1	219	74	99	21.1696
ff"""cccuuuuuuuuuuuuccc33	chr6:51412450-51412664(-)$1	214	106	131	24.2249
a[fffffftttttttttttffffff	chr16:91662662-91662880(+)$1	218	131	156	22.8019
ffffffffuuuuuuuuuuuufffff	chr1:180258960-180259180(-)$1	220	73	98	22.3911
eeeeeccctttttttttttcccEEE	chr2:181255244-181255456(+)$1	212	83	108	20.8520
:eeeeevvvvvvvvvvvvveeeee:	chr2:90856656-90856866(+)$1	210	43	68	20.0813
dda[cccuuuuuuuuuuuuccc]a3	chr15:65702933-65703148(+)$1	215	22	47	23.5323
[a[eeeeeuuuuuuuuuuuueeeee	chr5:135074024-135074239(+)$1	215	68	93	23.3064
##ccc[bbtttttttttttbb]ccc	chr5:34237443-34237667(+)$1	224	69	94	23.4015
$$cccwwwwwwwwwwwwwwccc333	chr11:57873223-57873438(+)$1	215	129	154	21.4492
ggcccccctttttttttttccc22c	chr13:38592173-38592384(-)$1	211	106	131	24.0085
iiiiiiiitttttttttttiiiiii	chr14:76489460-76489672(-)$1	212	33	58	23.7121
###dddduuuuuuuuuuuudddd33	chr5:68011672-68011891(-)$1	219	113	138	23.1862
F:eeeeeuuuuuuuuuuuueeeee:	chr5:122773091-122773303(+)$1	212	46	71	20.4590
eeee[ccctttttttttttccc22e	chr11:87428537-87428753(+)$1	216	49	74	24.0580
ggg!!ccctttttttttttcccggg	chr15:77621108-77621321(-)$1	213	86	111	24.6816
eeeeeccctttttttttttccc]ee	chr5:122812695-122812918(-)$1	223	21	46	24.1456
####dddduuuuuuuuuuuudddd3	chr13:44918655-44918873(+)$1	218	168	193	23.3326
gggggggvvvvvvvvvvvvvggggg	chr9:123370940-123371159(+)$1	219	174	199	23.2592
####ddddtttttttttttdddd44	chr6:87793581-87793798(-)$1	217	180	205	23.6025
cc!!ddddwwwwwwwwwwwwwwddd	chr7:150699813-150700032(-)$1	219	27	52	20.9498
========ttttttttttt======	chr14:21834063-21834279(+)$1	216	142	167	24.3556
[bbddddyyyyyyyyyyyyyyyydd	chr7:31267436-31267651(+)$1	215	32	57	20.4833
iggggggguuuuuuuuuuuuggggg	chr19:12841731-12841943(-)$1	212	53	78	23.6587
===!!ccctttttttttttccc22=	chr15:81680287-81680498(-)$1	211	114	139	24.6918
!!bbdddduuuuuuuuuuuudddd]	chr3:144219810-144220026(-)$1	216	45	70	22.7053
"ddddcccuuuuuuuuuuuuccc]d	chr3:89674516-89674728(-)$1	212	78	103	23.5490
iiiiiiiuuuuuuuuuuuuiiiiii	chr11:106644153-106644371(-)$1	218	62	87	23.3215
$$$eeeeeuuuuuuuuuuuueeeee	chr17:47818895-47819108(-)$1	213	55	80	22.7905
=[ffffffvvvvvvvvvvvvvffff	chr5:138172155-138172372(-)$1	217	82	107	21.9930
c!!eeeeeuuuuuuuuuuuueeeee	chr2:29036429-29036650(+)$1	221	4	29	23.2878
dddeeeeeuuuuuuuuuuuueeeee	chr8:114517338-114517551(-)$1	213	103	128	22.6695
========yyyyyyyyyyyyyyyy=	chr11:50109066-50109285(-)$1	219	7	32	21.2753
iiiiiivvvvvvvvvvvvviiiiii	chr4:11100385-11100601(+)$1	216	140	165	22.3832
fff"""bbuuuuuuuuuuuubb333	chr2:69699652-69699875(+)$1	223	5	30	23.2299
!eeeeebbtttttttttttbb]eee	chr8:26928289-26928507(-)$1	218	138	163	23.3694
ggggg!!auuuuuuuuuuuua22gg	chr11:117715929-117716138(+)$1	209	110	135	23.5603
fff!!cccuuuuuuuuuuuuccc22	chr17:34250177-34250398(-)$1	221	167	192	23.8020
ddd[ddddtttttttttttdddd]d	chr11:45723390-45723611(+)$1	221	168	193	22.7937
ccc"""bbtttttttttttbb]ccc	chr16:11216982-11217200(-)$1	218	72	97	23.2216
eeeee[bbuuuuuuuuuuuubbeee	chr7:107603000-107603219(+)$1	219	178	203	22.8650
"gggggggvvvvvvvvvvvvvgggg	chrX:148304914-148305133(+)$1	219	167	192	22.9191
dddyyyyyyyyyyyyyyyydddd33	chr4:114702450-114702667(+)$1	217	94	119	19.9580
eee!!ccctttttttttttccceee	chr11:57343806-57344028(+)$1	222	88	113	24.3476
""bb[ccctttttttttttccc]bb	chr13:102452203-102452416(-)$1	213	163	188	23.5470
bb####bbtttttttttttbb4444	chr7:148048807-148049030(+)$1	223	103	128	22.9356

#otherMatches

#Seq PSSM
UCCCGCCCACCUCCGAGCCGGGAGG	chr4:73897740-73897956(+)$1	216	55	80	23.9666
CACUGGCAACAUGUUUACACGGCAG	chr10:119526668-119526886(-)$1	218	6	31	23.0405
AGGUGUUAGCACACUGAAAGGCACU	chr15:97892646-97892870(-)$1	224	71	96	23.3040
AGUUACUUUUCCAAAUUACUAAGUA	chr17:34258155-34258378(-)$1	223	113	138	22.6789
GAACUCUGAUAUUAAGAAAAGGGUU	chr1:52243017-52243227(-)$1	210	123	148	23.3215
CAAGAAACAUAUAAAUACUUUUCAC	chr19:41330599-41330815(-)$1	216	45	70	20.1569
GACUGACCCUCAUCAAACACAGUCU	chr11:83216468-83216691(+)$1	223	122	147	20.5870
UAAAAUUAUUUAUUUUCUUUGUUUU	chrX:148306235-148306449(+)$1	214	87	112	22.7415
AGAGAACACAGAUUUGAAAGUUCUU	chr6:83758098-83758324(-)$1	226	37	62	22.3480
UCUCUGGCUUUCAGAUCCAUCUGCC	chr11:88154674-88154893(-)$1	219	74	99	21.1696
UUAGAUGCUGCUUCUUCAAUGCAAG	chr6:51412450-51412664(-)$1	214	106	131	24.2249
GAGUGAGCAACACGCAGAAGCUCGC	chr16:91662662-91662880(+)$1	218	131	156	22.8019
GUCAUUGUCACAAUAAAAUAGCAAU	chr1:180258960-180259180(-)$1	220	73	98	22.3911
CGGCCGGCUGCCCACCACUGCCCCG	chr2:181255244-181255456(+)$1	212	83	108	20.8520
UUCUGGUUUGUUUUUUUUUCUAGAU	chr2:90856656-90856866(+)$1	210	43	68	20.0813
CAUGCUGUAUUAGAAGUUUCGGGAC	chr15:65702933-65703148(+)$1	215	22	47	23.5323
GUGACACACCUCUGCUCUUCUGUGU	chr5:135074024-135074239(+)$1	215	68	93	23.3064
GAAUCUGUUACUUCCAUUUGCUGAU	chr5:34237443-34237667(+)$1	224	69	94	23.4015
CUGCUGUUGCAUUGUCUGAAGCCAA	chr11:57873223-57873438(+)$1	215	129	154	21.4492
CACAGCUGUCCUUGGAAACCAGUUC	chr13:38592173-38592384(-)$1	211	106	131	24.0085
UUUUAAAGGAUAAUAUGAACUUUAA	chr14:76489460-76489672(-)$1	212	33	58	23.7121
CGCCUCAGAACAUUGUCAAUGAGAA	chr5:68011672-68011891(-)$1	219	113	138	23.1862
CCAGGGGCUCCAUCACACACCCCUC	chr5:122773091-122773303(+)$1	212	46	71	20.4590
CACCUGACUUUUCCUAGUUGUCCUG	chr11:87428537-87428753(+)$1	216	49	74	24.0580
CCAACGGGCACGUCACCAUCCCUGG	chr15:77621108-77621321(-)$1	213	86	111	24.6816
ACGUCAUCUCCAAUUAGUUGAUAGA	chr5:122812695-122812918(-)$1	223	21	46	24.1456
AAGAAUGCACAGAAAAGGCAGCAUG	chr13:44918655-44918873(+)$1	218	168	193	23.3326
gacgucgcuuuuugauccuucgaug	chr9:123370940-123371159(+)$1	219	174	199	23.2592
UAGCUAUUAAAUAACAUCGAGUAAC	chr6:87793581-87793798(-)$1	217	180	205	23.6025
CCUCGUACUUAUUUAUUUACUUGUG	chr7:150699813-150700032(-)$1	219	27	52	20.9498
CUGUUGGUACUGCCAAUAAAUCGAC	chr14:21834063-21834279(+)$1	216	142	167	24.3556
GUCUACCAACUCCAGCCUUCACAGG	chr7:31267436-31267651(+)$1	215	32	57	20.4833
UAGACCCUAACACAUUUUACAGGGU	chr19:12841731-12841943(-)$1	212	53	78	23.6587
UUGCUGUCGUGUCCUCUGGGAUCCC	chr15:81680287-81680498(-)$1	211	114	139	24.6918
AUGACCUGUAAGUCAGAAGUCAGGC	chr3:144219810-144220026(-)$1	216	45	70	22.7053
GUUCCGAUUUCCUUCUCAACAUCUG	chr3:89674516-89674728(-)$1	212	78	103	23.5490
GAAUGUGCUAAGGAGAACACACAUU	chr11:106644153-106644371(-)$1	218	62	87	23.3215
CUGAGCUCAAACGUUAACCCGAGCU	chr17:47818895-47819108(-)$1	213	55	80	22.7905
AGUUCUGGGGUAAGGGUCUAGCCAG	chr5:138172155-138172372(-)$1	217	82	107	21.9930
CGGAAAAUUAAAAAGGAUGCAUUUU	chr2:29036429-29036650(+)$1	221	4	29	23.2878
UGUGUGGCGCCGUCCAUCUGGCCAC	chr8:114517338-114517551(-)$1	213	103	128	22.6695
UAAUCACGUUCAAGUGCAGUUAUUU	chr11:50109066-50109285(-)$1	219	7	32	21.2753
UUGAAAUUAUCUUUUUAUUUUUUAA	chr4:11100385-11100601(+)$1	216	140	165	22.3832
GGGAAAGCCCCCAUCUUUAAGCGCG	chr2:69699652-69699875(+)$1	223	5	30	23.2299
UGUUUGCCUCCUUUGUCCCGGUUAG	chr8:26928289-26928507(-)$1	218	138	163	23.3694
UGGCUGGCUGAAGGAGGACUGAAAG	chr11:117715929-117716138(+)$1	209	110	135	23.5603
AAAUCCAGAAGAAAUUGAGAUUGAU	chr17:34250177-34250398(-)$1	221	167	192	23.8020
CAAAGCUGUUUCCUGUGCGUAGCCU	chr11:45723390-45723611(+)$1	221	168	193	22.7937
GGCCUUGCUACCUCCAUUUGCUGCC	chr16:11216982-11217200(-)$1	218	72	97	23.2216
GAGCAGUCACCACCAUCCCAGAUGC	chr7:107603000-107603219(+)$1	219	178	203	22.8650
AGAUGUGUGCUUUUCAGGAAAAUAC	chrX:148304914-148305133(+)$1	219	167	192	22.9191
CGUGAAAGCAGCAAAACAAAUGGAG	chr4:114702450-114702667(+)$1	217	94	119	19.9580
CAUUUUCCUUAAGGUUGCUGGAGUG	chr11:57343806-57344028(+)$1	222	88	113	24.3476
uuguuuuguuuuUUUCCUUCAACAC	chr13:102452203-102452416(-)$1	213	163	188	23.5470
GUAAUUCUGUGAAGGCGAAAGUAAG	chr7:148048807-148049030(+)$1	223	103	128	22.9356

#DB
((((.(((...........))).))	chr4:73897740-73897956(+)$1	1	55	80	23.9666
(((((.(.............).)))	chr10:119526668-119526886(-)$1	1	6	31	23.0405
(((((((............))))))	chr15:97892646-97892870(-)$1	1	71	96	23.3040
.(((((((............)))))	chr17:34258155-34258378(-)$1	1	113	138	22.6789
(((((((............))))))	chr1:52243017-52243227(-)$1	1	123	148	23.3215
...((((............))))..	chr19:41330599-41330815(-)$1	1	45	70	20.1569
(((((..............)))))(	chr11:83216468-83216691(+)$1	1	122	147	20.5870
(((((.((...........)).)))	chrX:148306235-148306449(+)$1	1	87	112	22.7415
.((((((............))))))	chr6:83758098-83758324(-)$1	1	37	62	22.3480
((((.(((..............)))	chr11:88154674-88154893(-)$1	1	74	99	21.1696
((...(((............)))..	chr6:51412450-51412664(-)$1	1	106	131	24.2249
(.((((((...........))))))	chr16:91662662-91662880(+)$1	1	131	156	22.8019
))((((((............)))))	chr1:180258960-180259180(-)$1	1	73	98	22.3911
)))))(((...........))))))	chr2:181255244-181255456(+)$1	1	83	108	20.8520
.(((((.............))))).	chr2:90856656-90856866(+)$1	1	43	68	20.0813
(((.(((............))).).	chr15:65702933-65703148(+)$1	1	22	47	23.5323
.(.(((((............)))))	chr5:135074024-135074239(+)$1	1	68	93	23.3064
..(((.((...........)).)))	chr5:34237443-34237667(+)$1	1	69	94	23.4015
..(((..............)))...	chr11:57873223-57873438(+)$1	1	129	154	21.4492
((((((((...........)))..)	chr13:38592173-38592384(-)$1	1	106	131	24.0085
((((((((...........))))))	chr14:76489460-76489672(-)$1	1	33	58	23.7121
...((((............))))..	chr5:68011672-68011891(-)$1	1	113	138	23.1862
(.(((((............))))).	chr5:122773091-122773303(+)$1	1	46	71	20.4590
((((.(((...........)))..)	chr11:87428537-87428753(+)$1	1	49	74	24.0580
(((..(((...........))))))	chr15:77621108-77621321(-)$1	1	86	111	24.6816
((((((((...........))).))	chr5:122812695-122812918(-)$1	1	21	46	24.1456
....((((............)))).	chr13:44918655-44918873(+)$1	1	168	193	23.3326
(((((((.............)))))	chr9:123370940-123371159(+)$1	1	174	199	23.2592
....((((...........))))..	chr6:87793581-87793798(-)$1	1	180	205	23.6025
((..((((..............)))	chr7:150699813-150700032(-)$1	1	27	52	20.9498
((((((((...........))))))	chr14:21834063-21834279(+)$1	1	142	167	24.3556
.((((((................))	chr7:31267436-31267651(+)$1	1	32	57	20.4833
)(((((((............)))))	chr19:12841731-12841943(-)$1	1	53	78	23.6587
(((..(((...........)))..)	chr15:81680287-81680498(-)$1	1	114	139	24.6918
..((((((............)))).	chr3:144219810-144220026(-)$1	1	45	70	22.7053
.(((((((............))).)	chr3:89674516-89674728(-)$1	1	78	103	23.5490
(((((((............))))))	chr11:106644153-106644371(-)$1	1	62	87	23.3215
...(((((............)))))	chr17:47818895-47819108(-)$1	1	55	80	22.7905
(.((((((.............))))	chr5:138172155-138172372(-)$1	1	82	107	21.9930
(..(((((............)))))	chr2:29036429-29036650(+)$1	1	4	29	23.2878
((((((((............)))))	chr8:114517338-114517551(-)$1	1	103	128	22.6695
((((((((................)	chr11:50109066-50109285(-)$1	1	7	32	21.2753
((((((.............))))))	chr4:11100385-11100601(+)$1	1	140	165	22.3832
(((...((............))...	chr2:69699652-69699875(+)$1	1	5	30	23.2299
.(((((((...........)).)))	chr8:26928289-26928507(-)$1	1	138	163	23.3694
(((((..(............)..))	chr11:117715929-117716138(+)$1	1	110	135	23.5603
(((..(((............)))..	chr17:34250177-34250398(-)$1	1	167	192	23.8020
(((.((((...........)))).)	chr11:45723390-45723611(+)$1	1	168	193	22.7937
(((...((...........)).)))	chr16:11216982-11217200(-)$1	1	72	97	23.2216
(((((.((............)))))	chr7:107603000-107603219(+)$1	1	178	203	22.8650
.(((((((.............))))	chrX:148304914-148305133(+)$1	1	167	192	22.9191
(((................))))..	chr4:114702450-114702667(+)$1	1	94	119	19.9580
(((..(((...........))))))	chr11:57343806-57344028(+)$1	1	88	113	24.3476
..((.(((...........))).))	chr13:102452203-102452416(-)$1	1	163	188	23.5470
((....((...........))....	chr7:148048807-148049030(+)$1	1	103	128	22.9356

#PSSM
e : 0.12	f : 0.10	g : 0.09	i : 0.09	d : 0.09	# : 0.07	= : 0.07	[ : 0.05	c : 0.05	" : 0.05	: : 0.03	$ : 0.03	! : 0.03	% : 0.01	a : 0.01	F : 0.01	b : 0.01	
e : 0.16	g : 0.14	f : 0.12	d : 0.10	i : 0.07	# : 0.07	= : 0.05	[ : 0.03	$ : 0.03	c : 0.03	b : 0.03	! : 0.03	% : 0.01	a : 0.01	: : 0.01	" : 0.01	
e : 0.18	f : 0.14	g : 0.12	d : 0.09	i : 0.07	c : 0.07	# : 0.07	= : 0.05	b : 0.05	! : 0.03	% : 0.01	" : 0.01	a : 0.01	[ : 0.01	$ : 0.01	
e : 0.23	f : 0.10	g : 0.10	d : 0.09	! : 0.09	i : 0.07	" : 0.05	c : 0.05	# : 0.05	[ : 0.03	= : 0.03	b : 0.03	y : 0.01	
e : 0.21	d : 0.16	g : 0.10	f : 0.09	[ : 0.07	i : 0.07	c : 0.07	! : 0.07	" : 0.05	= : 0.03	y : 0.01	# : 0.01	
c : 0.25	d : 0.14	e : 0.12	g : 0.09	[ : 0.07	i : 0.07	f : 0.07	w : 0.03	= : 0.03	" : 0.03	! : 0.01	y : 0.01	# : 0.01	
c : 0.25	d : 0.14	b : 0.12	g : 0.09	e : 0.09	f : 0.07	i : 0.05	w : 0.03	v : 0.03	= : 0.03	a : 0.01	! : 0.01	y : 0.01	
c : 0.23	u : 0.14	b : 0.12	d : 0.09	v : 0.07	e : 0.07	g : 0.05	f : 0.05	w : 0.03	= : 0.03	y : 0.03	i : 0.01	a : 0.01	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.41	t : 0.34	v : 0.10	w : 0.07	y : 0.05	
u : 0.27	c : 0.20	d : 0.09	b : 0.09	v : 0.07	i : 0.07	e : 0.05	f : 0.03	w : 0.03	y : 0.03	g : 0.01	= : 0.01	
c : 0.25	d : 0.12	e : 0.12	b : 0.12	g : 0.07	i : 0.07	f : 0.05	a : 0.03	w : 0.03	y : 0.03	v : 0.03	= : 0.01	
c : 0.25	d : 0.12	e : 0.12	] : 0.09	g : 0.09	i : 0.07	f : 0.07	w : 0.03	y : 0.03	b : 0.03	= : 0.01	2 : 0.01	4 : 0.01	
e : 0.20	d : 0.14	g : 0.10	c : 0.10	f : 0.09	] : 0.07	i : 0.07	2 : 0.07	3 : 0.03	y : 0.03	E : 0.01	= : 0.01	4 : 0.01	
e : 0.21	g : 0.12	f : 0.10	3 : 0.09	i : 0.07	2 : 0.07	d : 0.07	c : 0.05	4 : 0.03	] : 0.03	6 : 0.01	E : 0.01	a : 0.01	= : 0.01	y : 0.01	b : 0.01	
e : 0.18	g : 0.12	3 : 0.12	f : 0.10	d : 0.09	i : 0.07	c : 0.07	= : 0.05	: : 0.03	4 : 0.03	6 : 0.01	E : 0.01	] : 0.01	2 : 0.01	b : 0.01	

#score	1254.4666358569461
#seq	55
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_UTR_m2_run2.txt

#BEAR
"""dddd!!ffffffooooooffffff]dddd]d	chr7:108971176-108971396(-)$1	220	155	189	12.2113
h[ccc[gggggggrrrrrrrrrggggggg]ccch	chr7:117203116-117203359(-)$1	243	34	68	10.5493
fff!!ggggggg[bboooooobb]ggggggg]ff	chr5:108535802-108536013(+)$1	211	45	79	14.5351
#a[=============nnnnn=============	chr19:10284248-10284466(-)$1	218	125	159	14.1150
"""ffffff"""ccc[arrrrrrrrra]ccc333	chr3:87973662-87973887(+)$1	225	118	152	10.5379
ggggbb[ccc!!cccooooooccc22ccc]bb22	chr11:60718155-60718368(-)$1	213	135	169	14.4094
a!!dddd[ccc!!cccmmmmcccccc333dddd2	chr7:28066309-28066527(+)$1	218	75	109	10.7921
===============lll===============:	chr7:140863680-140863892(+)$1	212	151	185	12.7460
!!ccc[ccc####cccnnnnnccc333cccccc2	chr4:123076522-123076737(-)$1	215	118	152	13.5939
F::dddd[ccc[cccooooooccc333ccc]ddd	chr10:57236544-57236759(-)$1	215	63	97	12.4474
dd[ccc[ccc"""ddddllldddd333ccc]ccc	chr19:5901137-5901353(-)$1	216	73	107	11.5207
$$$$$eeeee[ddddooooooddddeeeee4444	chr4:34900297-34900517(-)$1	220	16	50	12.7044
FFFF===========oooooo===========dd	chr8:89384812-89385022(+)$1	210	97	131	13.9479
iiii[eeeee"""bboooooobb333eeeee333	chr9:15118355-15118572(+)$1	217	15	49	16.0545
####eeeee[eeeeeooooooeeeee333eeeee	chr18:61714885-61715096(+)$1	211	43	77	12.7634
+++++dddd"""cccooooooccc333dddd333	chr18:10817038-10817257(+)$1	219	140	174	13.0494
EEeeeee[gggggggooooooggggggg22eeee	chr2:138112851-138113067(+)$1	216	177	211	10.6451
iii$$$$$ccc!!bbnnnnnbbccc333iiiiii	chr5:138200803-138201021(+)$1	218	24	58	11.7170
!============[aooooooa============	chr3:68820482-68820705(+)$1	223	32	66	16.7796
c[bb!!ccc!!ddddoooooodddd]cccbbccc	chr11:60965919-60966135(-)$1	216	152	186	12.6153
dddd[ccc[ddddbboooooobb333dddd22cc	chr15:59480251-59480475(+)$1	224	6	40	12.9059
hhh[bb!!gggggggooooooggggggg4444bb	chr5:8397913-8398131(-)$1	218	138	172	12.6848
===========!!ccclllccc22==========	chr18:61747432-61747650(+)$1	218	61	95	13.4010
c[hhhhhhhh"""bboooooobb22hhhhhhhh]	chr4:108013253-108013471(+)$1	218	146	180	12.5588
==========####cccmmmmccc22========	chr11:77525325-77525544(+)$1	219	23	57	12.6791
g!!bb[ffffff[bboooooobb22ffffff]bb	chr1:120229750-120229968(+)$1	218	108	142	12.9355
ffffffcccccc!!aooooooa22ccc>>>>>>>	chr8:77617457-77617674(+)$1	217	59	93	11.5274
###ggggggg"""bboooooobbgggggggccc]	chr2:72242011-72242225(+)$1	214	104	138	16.4933
####ccc[bb!!ccc[allla]ccc22bb]ccc5	chr4:69910014-69910226(-)$1	212	70	104	11.4243
bb[ccc[ccc!!ddddnnnnndddd]ccc]ccc]	chr7:20334582-20334793(-)$1	211	90	124	10.9750
))))))))ccc!!bboooooobb22cccgggggg	chr10:45205980-45206199(-)$1	219	133	167	11.5101
::ccc[ccc!!eeeeeooooooeeeeeccccccG	chr4:62050137-62050347(+)$1	210	134	168	9.8296
[eeeee[eeeee[bboooooobb]eeeee]eeee	chr2:29745306-29745522(+)$1	216	21	55	12.8825
$$cccccc[ccc[a[ccclllccc]a]ccc]ccc	chr19:46150410-46150625(+)$1	215	98	132	10.9798
hh:eeeee####cccooooooccc]eeeeeeeee	chr9:113885064-113885275(+)$1	211	116	150	12.2057
%%%iiiiiiiii[bbnnnnnbb]iiiiiiiii22	chr2:168575422-168575646(-)$1	224	24	58	11.3060
[ccc"""dddd[a[aooooooa]a]dddd333cc	chr7:52689888-52690102(-)$1	214	61	95	13.9284
"""ccc[accc[cccnnnnncccccc]a]ccc55	chr4:82872341-82872559(-)$1	218	83	117	11.3435
gggg"""ffffffbboooooobb22ffffff22g	chr5:108244745-108244962(-)$1	217	56	90	13.1182
iiiiiiiii####bboooooobb4444iiiiiii	chr15:38418868-38419087(-)$1	219	86	120	16.1608
"""==========rrrrrrrrr==========33	chr15:12095824-12096040(+)$1	216	51	85	13.6897
iiii!!eeeee!!bboooooobb22eeeee22ii	chr7:149562498-149562715(-)$1	217	106	140	14.5079
ffff[a[iiiiiiiiimmmmiiiiiiiii]a]ff	chr14:57343181-57343398(-)$1	217	4	38	10.5207
"""ggggggg!!cccmmmmccc22ggggggg22e	chr13:98022844-98023062(+)$1	218	114	148	11.5879
ee####eeeee[cccooooooccceeeee4444e	chr3:36938131-36938349(+)$1	218	93	127	14.1950
ccc[dddd[ffffffooooooffffffdddd]cc	chr10:119520700-119520916(-)$1	216	147	181	11.6055
ee[ccc[dddd[cccooooooccc]dddd]ccce	chr15:12189229-12189447(+)$1	218	152	186	13.7850
[bbdddd[dddd[bboooooobb]dddd]dddd]	chr2:117097098-117097309(+)$1	211	42	76	12.0155
b"""==========oooooo==========4444	chr3:34550920-34551140(+)$1	220	32	66	16.0346
eeeeeccc!!eeeeeooooooeeeee22ccc]ee	chr9:85637429-85637654(-)$1	225	177	211	11.6665
===[ffffff"""ddddllldddd333ffffff2	chr3:41419121-41419345(+)$1	224	118	152	10.4221
e!!ggggggg!!cccnnnnncccggggggg333e	chr6:117875281-117875495(+)$1	214	66	100	13.3530

#otherMatches

#Seq PSSM
GUUGUCUUCAAUAAAUUAAGUUUUAUUUGGAUUG	chr7:108971176-108971396(-)$1	220	155	189	12.2113
aaguuaccacagggauaacuggcuuguggcggcu	chr7:117203116-117203359(-)$1	243	34	68	10.5493
UUUGGUGCCGCAGGUAGAAUAGCAUGUGGCGAAA	chr5:108535802-108536013(+)$1	211	45	79	14.5351
GGAGAGCUAGCCCUGAGGUAGUCAGGGCUAGCUC	chr19:10284248-10284466(-)$1	218	125	159	14.1150
AUUGAUAUGAAAUGAGAUUCUAUUUUUGUCAAAG	chr3:87973662-87973887(+)$1	225	118	152	10.5379
CACAAUACAGUACUUGAAUGAGGGCCCUGAGUCA	chr11:60718155-60718368(-)$1	213	135	169	14.4094
CCUUCUCUGGUGACUUGCAGAAGACCUUCGAGAU	chr7:28066309-28066527(+)$1	218	75	109	10.7921
UAUUUUGAAUAAAUAAGCUAUUUAUUUAAAAUAC	chr7:140863680-140863892(+)$1	212	151	185	12.7460
GAUGGACUGAUCUCCUCAGCAAGGCAGCAGCCAG	chr4:123076522-123076737(-)$1	215	118	152	13.5939
UAAAACUGAAAACAAAUAUUCUUGACAUUUGGGU	chr10:57236544-57236759(-)$1	215	63	97	12.4474
GAUGACUGUGACCGUGGCUACCACAUGUACUGUC	chr19:5901137-5901353(-)$1	216	73	107	11.5207
AUGCUUUCCCAUUUCCCAGAAGAGAGGGAAUAAA	chr4:34900297-34900517(-)$1	220	16	50	12.7044
GUGUGACUCUGUGCUUUCUUUGGCGUGGAGUCUG	chr8:89384812-89385022(+)$1	210	97	131	13.9479
ACAGCUAACAAAGUAUAAAACUGAUGUGUUAAUU	chr9:15118355-15118572(+)$1	217	15	49	16.0545
AGUGCUCCGCGCCGUGAAGAAGCGGCUCCCGGGG	chr18:61714885-61715096(+)$1	211	43	77	12.7634
UUAUUAUUACUCUGUUUUUUUACAAACUGAUUAU	chr18:10817038-10817257(+)$1	219	140	174	13.0494
AAAAUAUAAAUAUGAAGUACCUCAUGUUGAAUGU	chr2:138112851-138113067(+)$1	216	177	211	10.6451
AGGUUCCCUGGCAGGCCUCACCCCGUUCUCUUCA	chr5:138200803-138201021(+)$1	218	24	58	11.7170
UAAUAUUUCAUGUUGGUUUUACAUAUGAAAUGUU	chr3:68820482-68820705(+)$1	223	32	66	16.7796
UAGCAAGGUCUGCCAACUCUAUGGCUGCCGCACA	chr11:60965919-60966135(-)$1	216	152	186	12.6153
GCGCGUCUCGCUCGCUCACACGCCUGGAGCCCAG	chr15:59480251-59480475(+)$1	224	6	40	12.9059
GAAAAGCAUGGGUUUGCUUCAGAGCCCACAACCU	chr5:8397913-8398131(-)$1	218	138	172	12.6848
CACAGUUGUGAUGGUUGUAAAUGUUCACAAUUGU	chr18:61747432-61747650(+)$1	218	61	95	13.4010
CACUGCAGUUAAAUCUGAGGUGGCCgacugcaga	chr4:108013253-108013471(+)$1	218	146	180	12.5588
GGAUGCUUCAGGCCGGUGUACAUCAGUGAGGCAU	chr11:77525325-77525544(+)$1	219	23	57	12.6791
UGAAAUCCAGAGAGUGAGAGGGCAGUUCUGGUUU	chr1:120229750-120229968(+)$1	218	108	142	12.9355
GCUCACGGUCUCCAGUCGCCUCCAGAGUUUCCGC	chr8:77617457-77617674(+)$1	217	59	93	11.5274
CCCUUUGUUACCAUGACAGUACAUAACAAGAAAA	chr2:72242011-72242225(+)$1	214	104	138	16.4933
GAAAGUGGAGUCGGAGCUGAGGUCCAUCUGCACC	chr4:69910014-69910226(-)$1	212	70	104	11.4243
GAGUGGUCCCUAGGCACCCCCUGCCCGGGCCCAG	chr7:20334582-20334793(-)$1	211	90	124	10.9750
GCGCGCCGGGCAGCACGACCAUGAGGCCGCGGAG	chr10:45205980-45206199(-)$1	219	133	167	11.5101
CCGGGACUUAAAUUUCACACUAGAAAUGAGCUCC	chr4:62050137-62050347(+)$1	210	134	168	9.8296
AGCCGCCGCGGGAGCCGGACUGCAUCCGCCGCGG	chr2:29745306-29745522(+)$1	216	21	55	12.8825
UUACCCGGAGCAUGGCGGAUACCGGCUUGCGCCG	chr19:46150410-46150625(+)$1	215	98	132	10.9798
GCUUCCAGUUUUAGCAUUUUAGUUUCUGGAUUUC	chr9:113885064-113885275(+)$1	211	116	150	12.2057
GAGCGGGAACGGAGAAAAGCUCGCUGUUCCCGAC	chr2:168575422-168575646(-)$1	224	24	58	11.3060
AUGGAAGUGAUUGGUGAACAGAGCUGUCAAUCUC	chr7:52689888-52690102(-)$1	214	61	95	13.9284
UUUCCAGUCCUCUCAUUGGUUGAAGGUGGUGGCA	chr4:82872341-82872559(-)$1	218	83	117	11.3435
UGGAAAUAGUGUUUCGAGUAGGAUUAGCGCUUCU	chr5:108244745-108244962(-)$1	217	56	90	13.1182
UAGUAUCAAAUUGGAAUGUUGUUGUUGUUGAUAU	chr15:38418868-38419087(-)$1	219	86	120	16.1608
UUUCUUAUAAUCUUCAUUACAUAGGUUAUAAGUC	chr15:12095824-12096040(+)$1	216	51	85	13.6897
GCUUCAUGGGAAUGGACAUACCCCCUCCCAGUGG	chr7:149562498-149562715(-)$1	217	106	140	14.5079
UGUUUGGUUUUGGGAUUACCGUCCUAAAAGUUAG	chr14:57343181-57343398(-)$1	217	4	38	10.5207
ACUGAAGGUCAAUAAAUUAUUAGAGAUUUUCUCU	chr13:98022844-98023062(+)$1	218	114	148	11.5879
UCCAUUGAAGGAGUGAGCCAGCACCUUUCUCCCG	chr3:36938131-36938349(+)$1	218	93	127	14.1950
gcagcugaugguaaugcuuuuguuauuucgggug	chr10:119520700-119520916(-)$1	216	147	181	11.6055
AGCUGGCUUGAUAUAAUCAGGUAUUUCAACCCAU	chr15:12189229-12189447(+)$1	218	152	186	13.7850
GCCCUGUAUUGUUAAUUCUAUUUUACAAAAUAGA	chr2:117097098-117097309(+)$1	211	42	76	12.0155
UACUGGCAAGACCGUUUUCGUGGUCUUGUUUAAG	chr3:34550920-34551140(+)$1	220	32	66	16.0346
UUAUACAGAGAUAUAUAGUUUUAUAUAAUUGUUG	chr9:85637429-85637654(-)$1	225	177	211	11.6665
GGGCAUUUGGAAUAAGCCCAGUUUCCCCUAAAUU	chr3:41419121-41419345(+)$1	224	118	152	10.4221
UAUGUACUUUUCUGGAGAACCCAAAGGUGCUAGA	chr6:117875281-117875495(+)$1	214	66	100	13.3530

#DB
...((((..((((((......)))))).)))).)	chr7:108971176-108971396(-)$1	1	155	189	12.2113
(.(((.(((((((.........))))))).))))	chr7:117203116-117203359(-)$1	1	34	68	10.5493
(((..(((((((.((......)).))))))).))	chr5:108535802-108536013(+)$1	1	45	79	14.5351
.(.(((((((((((((.....)))))))))))))	chr19:10284248-10284466(-)$1	1	125	159	14.1150
...((((((...(((.(.........).)))...	chr3:87973662-87973887(+)$1	1	118	152	10.5379
((((((.(((..(((......)))..))).))..	chr11:60718155-60718368(-)$1	1	135	169	14.4094
(..((((.(((..(((....))))))...)))).	chr7:28066309-28066527(+)$1	1	75	109	10.7921
(((((((((((((((...))))))))))))))).	chr7:140863680-140863892(+)$1	1	151	185	12.7460
..(((.(((....(((.....)))...)))))).	chr4:123076522-123076737(-)$1	1	118	152	13.5939
(..((((.(((.(((......)))...))).)))	chr10:57236544-57236759(-)$1	1	63	97	12.4474
((.(((.(((...((((...))))...))).)))	chr19:5901137-5901353(-)$1	1	73	107	11.5207
.....(((((.((((......)))))))))....	chr4:34900297-34900517(-)$1	1	16	50	12.7044
(((((((((((((((......)))))))))))((	chr8:89384812-89385022(+)$1	1	97	131	13.9479
((((.(((((...((......))...)))))...	chr9:15118355-15118572(+)$1	1	15	49	16.0545
....(((((.(((((......)))))...)))))	chr18:61714885-61715096(+)$1	1	43	77	12.7634
.....((((...(((......)))...))))...	chr18:10817038-10817257(+)$1	1	140	174	13.0494
))(((((.(((((((......)))))))..))))	chr2:138112851-138113067(+)$1	1	177	211	10.6451
(((.....(((..((.....)))))...))))))	chr5:138200803-138201021(+)$1	1	24	58	11.7170
.((((((((((((.(......)))))))))))))	chr3:68820482-68820705(+)$1	1	32	66	16.7796
(.((..(((..((((......)))).))))))))	chr11:60965919-60966135(-)$1	1	152	186	12.6153
((((.(((.((((((......))...))))..))	chr15:59480251-59480475(+)$1	1	6	40	12.9059
(((.((..(((((((......)))))))....))	chr5:8397913-8398131(-)$1	1	138	172	12.6848
(((((((((((..(((...)))..))))))))))	chr18:61747432-61747650(+)$1	1	61	95	13.4010
(.((((((((...((......))..)))))))).	chr4:108013253-108013471(+)$1	1	146	180	12.5588
((((((((((....(((....)))..))))))))	chr11:77525325-77525544(+)$1	1	23	57	12.6791
(..((.((((((.((......))..)))))).))	chr1:120229750-120229968(+)$1	1	108	142	12.9355
((((((((((((..(......)..))).......	chr8:77617457-77617674(+)$1	1	59	93	11.5274
...(((((((...((......)))))))))))).	chr2:72242011-72242225(+)$1	1	104	138	16.4933
....(((.((..(((.(...).)))..)).))).	chr4:69910014-69910226(-)$1	1	70	104	11.4243
((.(((.(((..((((.....)))).))).))).	chr7:20334582-20334793(-)$1	1	90	124	10.9750
........(((..((......))..)))))))))	chr10:45205980-45206199(-)$1	1	133	167	11.5101
..(((.(((..(((((......))))))))))))	chr4:62050137-62050347(+)$1	1	134	168	9.8296
.(((((.(((((.((......)).))))).))))	chr2:29745306-29745522(+)$1	1	21	55	12.8825
..((((((.(((.(.(((...))).).))).)))	chr19:46150410-46150625(+)$1	1	98	132	10.9798
)).(((((....(((......))).)))))((((	chr9:113885064-113885275(+)$1	1	116	150	12.2057
...(((((((((.((.....)).)))))))))..	chr2:168575422-168575646(-)$1	1	24	58	11.3060
.(((...((((.(.(......).).))))...))	chr7:52689888-52690102(-)$1	1	61	95	13.9284
...(((.((((.(((.....)))))).).)))..	chr4:82872341-82872559(-)$1	1	83	117	11.3435
((((...((((((((......))..))))))..)	chr5:108244745-108244962(-)$1	1	56	90	13.1182
(((((((((....((......))....)))))))	chr15:38418868-38419087(-)$1	1	86	120	16.1608
...((((((((((.........))))))))))..	chr15:12095824-12096040(+)$1	1	51	85	13.6897
((((..(((((..((......))..)))))..))	chr7:149562498-149562715(-)$1	1	106	140	14.5079
((((.(.(((((((((....))))))))).).))	chr14:57343181-57343398(-)$1	1	4	38	10.5207
...(((((((..(((....)))..)))))))..)	chr13:98022844-98023062(+)$1	1	114	148	11.5879
((....(((((.(((......))))))))....)	chr3:36938131-36938349(+)$1	1	93	127	14.1950
(((.((((.((((((......)))))))))).))	chr10:119520700-119520916(-)$1	1	147	181	11.6055
((.(((.((((.(((......))).)))).))))	chr15:12189229-12189447(+)$1	1	152	186	13.7850
.((((((.((((.((......)).)))).)))).	chr2:117097098-117097309(+)$1	1	42	76	12.0155
(...((((((((((......))))))))))....	chr3:34550920-34551140(+)$1	1	32	66	16.0346
((((((((..(((((......)))))..))).))	chr9:85637429-85637654(-)$1	1	177	211	11.6665
(((.((((((...((((...))))...)))))).	chr3:41419121-41419345(+)$1	1	118	152	10.4221
(..(((((((..(((.....))))))))))...)	chr6:117875281-117875495(+)$1	1	66	100	13.3530

#PSSM
" : 0.09	# : 0.07	= : 0.07	i : 0.07	e : 0.07	h : 0.05	f : 0.05	g : 0.05	c : 0.05	[ : 0.05	! : 0.03	F : 0.03	d : 0.03	$ : 0.03	b : 0.03	a : 0.01	+ : 0.01	E : 0.01	) : 0.01	: : 0.01	% : 0.01	
" : 0.11	= : 0.09	! : 0.07	i : 0.07	e : 0.07	[ : 0.05	f : 0.05	# : 0.05	g : 0.03	: : 0.03	d : 0.03	$ : 0.03	h : 0.03	b : 0.03	c : 0.03	a : 0.01	F : 0.01	+ : 0.01	E : 0.01	) : 0.01	% : 0.01	
" : 0.11	c : 0.11	= : 0.09	[ : 0.07	i : 0.07	# : 0.07	f : 0.05	! : 0.05	e : 0.05	g : 0.03	: : 0.03	b : 0.03	h : 0.03	$ : 0.01	F : 0.01	+ : 0.01	d : 0.01	) : 0.01	% : 0.01	
c : 0.17	= : 0.11	d : 0.09	g : 0.09	i : 0.07	e : 0.07	f : 0.05	# : 0.05	[ : 0.05	$ : 0.03	b : 0.03	! : 0.01	F : 0.01	+ : 0.01	h : 0.01	) : 0.01	" : 0.01	
c : 0.17	= : 0.15	d : 0.09	e : 0.09	! : 0.05	f : 0.05	b : 0.05	[ : 0.05	g : 0.05	$ : 0.03	i : 0.03	" : 0.03	+ : 0.01	h : 0.01	) : 0.01	# : 0.01	
= : 0.15	c : 0.15	d : 0.11	e : 0.11	[ : 0.07	g : 0.07	f : 0.05	b : 0.03	! : 0.03	i : 0.03	" : 0.03	$ : 0.01	h : 0.01	) : 0.01	a : 0.01	# : 0.01	
= : 0.15	c : 0.15	[ : 0.13	e : 0.13	d : 0.11	g : 0.09	f : 0.05	i : 0.03	" : 0.03	$ : 0.01	! : 0.01	h : 0.01	) : 0.01	
c : 0.19	= : 0.15	e : 0.13	g : 0.09	[ : 0.09	f : 0.07	d : 0.07	i : 0.05	! : 0.03	$ : 0.01	h : 0.01	) : 0.01	a : 0.01	
c : 0.23	= : 0.15	g : 0.13	e : 0.11	f : 0.07	d : 0.07	[ : 0.05	i : 0.05	! : 0.03	h : 0.01	b : 0.01	# : 0.01	
c : 0.19	= : 0.15	g : 0.13	f : 0.09	e : 0.09	d : 0.07	# : 0.05	! : 0.05	" : 0.03	i : 0.03	[ : 0.01	h : 0.01	b : 0.01	
= : 0.13	" : 0.13	! : 0.13	c : 0.13	e : 0.09	f : 0.07	g : 0.07	# : 0.07	d : 0.07	i : 0.03	[ : 0.01	
! : 0.19	" : 0.13	= : 0.11	[ : 0.09	f : 0.07	g : 0.07	# : 0.07	d : 0.07	e : 0.07	c : 0.03	i : 0.03	
c : 0.21	[ : 0.11	= : 0.11	! : 0.11	" : 0.09	d : 0.07	f : 0.05	g : 0.05	# : 0.05	e : 0.05	a : 0.01	i : 0.01	
b : 0.26	c : 0.26	d : 0.09	= : 0.07	e : 0.05	f : 0.03	r : 0.03	g : 0.03	[ : 0.03	# : 0.01	! : 0.01	a : 0.01	i : 0.01	
c : 0.28	b : 0.26	d : 0.09	= : 0.05	e : 0.05	a : 0.05	f : 0.03	r : 0.03	g : 0.03	[ : 0.01	i : 0.01	o : 0.01	
o : 0.59	c : 0.09	n : 0.07	d : 0.05	r : 0.03	[ : 0.03	= : 0.01	l : 0.01	e : 0.01	i : 0.01	m : 0.01	
o : 0.61	n : 0.13	m : 0.05	r : 0.03	a : 0.03	l : 0.03	d : 0.03	c : 0.03	
o : 0.61	n : 0.13	l : 0.09	m : 0.07	r : 0.05	c : 0.01	
o : 0.61	n : 0.13	l : 0.09	m : 0.07	r : 0.05	= : 0.01	
o : 0.61	n : 0.13	l : 0.07	r : 0.05	m : 0.05	c : 0.03	= : 0.01	
o : 0.59	c : 0.09	r : 0.05	n : 0.05	= : 0.03	d : 0.03	b : 0.03	m : 0.01	a : 0.01	l : 0.01	i : 0.01	
b : 0.26	c : 0.26	d : 0.09	= : 0.07	r : 0.05	a : 0.05	f : 0.03	e : 0.03	g : 0.03	] : 0.01	o : 0.01	i : 0.01	
c : 0.26	b : 0.23	= : 0.11	d : 0.09	g : 0.05	e : 0.05	2 : 0.05	f : 0.03	] : 0.03	r : 0.01	i : 0.01	
c : 0.24	2 : 0.15	= : 0.11	g : 0.09	d : 0.09	] : 0.05	e : 0.05	f : 0.03	3 : 0.03	i : 0.03	r : 0.01	a : 0.01	4 : 0.01	
g : 0.13	= : 0.13	2 : 0.13	3 : 0.13	c : 0.09	e : 0.09	d : 0.07	] : 0.07	f : 0.03	i : 0.03	r : 0.01	4 : 0.01	
3 : 0.15	e : 0.15	g : 0.13	= : 0.13	f : 0.07	c : 0.07	2 : 0.05	d : 0.05	] : 0.03	i : 0.03	r : 0.01	h : 0.01	a : 0.01	4 : 0.01	
= : 0.15	3 : 0.15	g : 0.13	e : 0.13	c : 0.09	f : 0.07	d : 0.07	2 : 0.03	] : 0.03	i : 0.03	a : 0.01	h : 0.01	4 : 0.01	
c : 0.17	= : 0.15	g : 0.13	e : 0.11	d : 0.11	3 : 0.05	f : 0.05	i : 0.05	] : 0.03	h : 0.01	> : 0.01	b : 0.01	a : 0.01	2 : 0.01	
c : 0.19	= : 0.15	d : 0.11	g : 0.11	e : 0.11	i : 0.07	f : 0.05	3 : 0.03	] : 0.03	2 : 0.01	4 : 0.01	h : 0.01	> : 0.01	b : 0.01	
= : 0.15	c : 0.15	] : 0.13	d : 0.11	g : 0.09	e : 0.09	i : 0.05	f : 0.05	4 : 0.03	2 : 0.01	b : 0.01	h : 0.01	> : 0.01	3 : 0.01	
c : 0.19	= : 0.13	d : 0.09	e : 0.09	4 : 0.07	g : 0.05	] : 0.05	i : 0.05	f : 0.05	b : 0.03	2 : 0.03	3 : 0.03	h : 0.01	> : 0.01	a : 0.01	
c : 0.21	= : 0.13	] : 0.09	3 : 0.09	d : 0.07	4 : 0.07	e : 0.07	2 : 0.07	i : 0.05	b : 0.01	h : 0.01	> : 0.01	g : 0.01	f : 0.01	
c : 0.24	= : 0.09	3 : 0.09	e : 0.09	2 : 0.07	d : 0.07	f : 0.05	4 : 0.05	i : 0.05	b : 0.03	] : 0.01	h : 0.01	> : 0.01	g : 0.01	5 : 0.01	
e : 0.17	c : 0.11	2 : 0.09	= : 0.07	3 : 0.07	] : 0.07	d : 0.05	i : 0.05	f : 0.03	4 : 0.03	b : 0.03	5 : 0.03	g : 0.03	h : 0.01	: : 0.01	> : 0.01	G : 0.01	

#score	661.9702175729118
#seq	52
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_UTR_m1_run2.txt

#BEAR
ee!!ddddwwwwwwwwwwwwwwdddd]	chr2:138112851-138113067(+)$1	216	60	87	22.6316
!dddd[ccctttttttttttcccdddd	chr18:46767914-46768129(+)$1	215	54	81	21.9640
eeecccxxxxxxxxxxxxxxxccc>>>	chr2:125657199-125657411(-)$1	212	42	69	18.2084
ee[bb[cccuuuuuuuuuuuuccc]bb	chr16:91858415-91858632(+)$1	217	185	212	23.9316
cc[ddddyyyyyyyyyyyyyyyydddd	chr13:93155453-93155664(+)$1	211	2	29	22.1068
ee!!ddddwwwwwwwwwwwwwwdddd2	chr9:85637429-85637654(-)$1	225	120	147	22.4859
fffff!!ccctttttttttttccc]ff	chr5:92715608-92715827(-)$1	219	75	102	22.0770
ff!!ddddwwwwwwwwwwwwwwdddd2	chr4:4693534-4693762(-)$1	228	10	37	22.3052
ee[bbyyyyyyyyyyyyyyyybbeeee	chr11:75315974-75316190(+)$1	216	135	162	21.0377
ffff!!cccuuuuuuuuuuuuccc22f	chr7:52721599-52721817(-)$1	218	92	119	23.6622
eeecccxxxxxxxxxxxxxxxccc>>>	chr2:125657212-125657423(-)$1	211	54	81	18.2084
ddbb[dddduuuuuuuuuuuudddd]b	chr2:179926826-179927049(-)$1	223	39	66	22.6186
cccdddd[atttttttttttadddd]c	chr5:149364250-149364464(-)$1	214	0	27	22.1933
!!cccyyyyyyyyyyyyyyyyccc22d	chr6:30606454-30606673(-)$1	219	135	162	22.2037
dgggggggyyyyyyyyyyyyyyyyggg	chr10:57236544-57236759(-)$1	215	111	138	22.1198
::::cccwwwwwwwwwwwwwwcccfff	chr11:120489699-120489923(-)$1	224	159	186	18.8150
hhh[ddddvvvvvvvvvvvvvddddhh	chr18:9995609-9995828(-)$1	219	77	104	22.2845
b!!bb[cccvvvvvvvvvvvvvccc]b	chr7:117203223-117203443(-)$1	220	165	192	23.1773
ii####cccyyyyyyyyyyyyyyyycc	chr2:103897154-103897377(+)$1	223	69	96	21.4545
cc[ccc!!bbtttttttttttbb22cc	chr10:35429476-35429691(-)$1	215	11	38	21.6061
:hhhhhhhhuuuuuuuuuuuuhhhhhh	chr11:86550593-86550812(-)$1	219	63	90	20.3824
======^^^^^^^^^^^^^^^^^^===	chr11:77525325-77525544(+)$1	219	144	171	16.5775
hhhhhhcccwwwwwwwwwwwwwwccc5	chr16:32961671-32961890(+)$1	219	114	141	21.0554
:gggggggvvvvvvvvvvvvvgggggg	chr2:103606132-103606350(-)$1	218	50	77	22.1213
ffff!!ccctttttttttttccc22ff	chr11:116711164-116711390(-)$1	226	186	213	21.7500
a!!eeeeevvvvvvvvvvvvveeeee2	chr16:91671953-91672177(+)$1	224	123	150	22.1003
eeffffffyyyyyyyyyyyyyyyyfff	chr7:117203262-117203483(-)$1	221	75	102	20.7426
gg!!eeeeettttttttttteeeeegg	chr9:44759981-44760199(-)$1	218	122	149	21.1821
hhhhhh[ccctttttttttttccc]hh	chr19:46729792-46730005(+)$1	213	112	139	21.8533
dd!!eeeeettttttttttteeeee]d	chr11:120500776-120500988(-)$1	212	53	80	20.8313
bb[cccxxxxxxxxxxxxxxxccc]bb	chr1:24620730-24620954(-)$1	224	94	121	18.4707
cgggggggvvvvvvvvvvvvvgggggg	chr9:123370975-123371189(+)$1	214	138	165	23.0678
cccccddddxxxxxxxxxxxxxxxddd	chr9:120864409-120864628(+)$1	219	129	156	17.6862
==========ttttttttttt======	chr13:55415134-55415356(+)$1	222	4	31	22.1048
dd[bb[eeeeevvvvvvvvvvvvveee	chr14:32912577-32912794(+)$1	217	56	83	18.4343
ee:::ddddvvvvvvvvvvvvvddddd	chr15:98761881-98762096(-)$1	215	110	137	19.3909
hhhhhyyyyyyyyyyyyyyyyhhhhhh	chr6:51411132-51411347(-)$1	215	106	133	20.5209
gggggg[bbvvvvvvvvvvvvvbb]gg	chr18:10817038-10817257(+)$1	219	32	59	22.6180
[ccc!!ccctttttttttttccc22cc	chr16:8689741-8689962(-)$1	221	116	143	22.5435
iiiiiiiiitttttttttttiiiiiii	chr11:101350969-101351182(-)$1	213	127	154	21.7131
%%%ddddwwwwwwwwwwwwwwdddd33	chr7:91257833-91258052(-)$1	219	31	58	20.2120
iiiiiiiivvvvvvvvvvvvviiiiii	chr4:128826817-128827041(-)$1	224	162	189	23.3056
dddd"""ccctttttttttttccc777	chr7:133272998-133273215(-)$1	217	132	159	20.4234
cgggggggvvvvvvvvvvvvvgggggg	chr9:123371054-123371291(+)$1	237	59	86	23.0678
!!ccc[bbwwwwwwwwwwwwwwbb]cc	chr6:52496478-52496697(-)$1	219	128	155	22.5929
b[bb"""ccctttttttttttcccbbb	chr11:8334167-8334380(-)$1	213	70	97	21.2849
"""ccc!!bbtttttttttttbb22cc	chr16:18255512-18255732(-)$1	220	158	185	21.3402
ddddcccwwwwwwwwwwwwwwccc]dd	chr2:152719351-152719566(+)$1	215	39	66	22.5433
gggg[dddduuuuuuuuuuuuddddgg	chr9:4296524-4296734(-)$1	210	96	123	23.5048
dddd[dddduuuuuuuuuuuudddd]d	chr5:77428495-77428719(+)$1	224	154	181	22.8029
cgggggggvvvvvvvvvvvvvgggggg	chr9:123371013-123371249(+)$1	236	100	127	23.0678
iiiii[cccvvvvvvvvvvvvvcccii	chr7:109334379-109334599(-)$1	220	102	129	23.7801
cc[cccxxxxxxxxxxxxxxxccc]cc	chr8:89384812-89385022(+)$1	210	10	37	19.4116
cccffffffvvvvvvvvvvvvvfffff	chr10:117261600-117261811(-)$1	211	48	75	21.2258
eeee"""bbvvvvvvvvvvvvvbb]ee	chr6:65030400-65030610(+)$1	210	68	95	21.8491
b!!bb[cccvvvvvvvvvvvvvccc]b	chr7:117203181-117203412(-)$1	231	134	161	23.1773
[ddddyyyyyyyyyyyyyyyyddddbb	chr4:132383056-132383277(-)$1	221	57	84	21.0027

#otherMatches

#Seq PSSM
ACUGUCUUUUUUUUUUUUUUUUAAGGU	chr2:138112851-138113067(+)$1	216	60	87	22.6316
UAAGUGACAUGUUAACACUUUGUGCUU	chr18:46767914-46768129(+)$1	215	54	81	21.9640
AGCAGCAAAAUAAACAGUGCAGCUCAG	chr2:125657199-125657411(-)$1	212	42	69	18.2084
UGAGGCUUAAAGAUUCAGAGGUAAACC	chr16:91858415-91858632(+)$1	217	185	212	23.9316
UACAGUGACAGAACAAGAAUAGGCACU	chr13:93155453-93155664(+)$1	211	2	29	22.1068
UAUUUGAUAUGAACUUUAUAGAAUUAU	chr9:85637429-85637654(-)$1	225	120	147	22.4859
UAUAAUUUGUAAACCACAGUAACAUUU	chr5:92715608-92715827(-)$1	219	75	102	22.0770
UUUCCCACUCAGUUGACAGAAUGUGGU	chr4:4693534-4693762(-)$1	228	10	37	22.3052
AUUACACCACAGACAACAUGAGUAUCU	chr11:75315974-75316190(+)$1	216	135	162	21.0377
AGGGUUAUGAGCCUACCUAUCCAUCCC	chr7:52721599-52721817(-)$1	218	92	119	23.6622
AGCAGCAAAAUAAACAGUGCAGCUCAG	chr2:125657212-125657423(-)$1	211	54	81	18.2084
CCCCAGCAGCUCAUCUCCAUUCUGCCG	chr2:179926826-179927049(-)$1	223	39	66	22.6186
CGUUGUGACGAACGGAACAAGCGCAGA	chr5:149364250-149364464(-)$1	214	0	27	22.1933
AAGACUUAAAAAAGAUAGAAUGUUACC	chr6:30606454-30606673(-)$1	219	135	162	22.2037
AGCACUUAUUUUAGAAACAUUAAUUAA	chr10:57236544-57236759(-)$1	215	111	138	22.1198
AAAUCCCUUUCUUGUAAACCUGGGGAC	chr11:120489699-120489923(-)$1	224	159	186	18.8150
CUUAUCUAACCAAUAUUUUUCUAGGAA	chr18:9995609-9995828(-)$1	219	77	104	22.2845
augucggcucuuccuaucguuaagcag	chr7:117203223-117203443(-)$1	220	165	192	23.1773
uauucuuguuauauaucugccucaugc	chr2:103897154-103897377(+)$1	223	69	96	21.4545
UGUGGGCUUAUAUUAUAAUUUUACACC	chr10:35429476-35429691(-)$1	215	11	38	21.6061
UUGGCUUCAGUACCUUGACUAUGGAGU	chr11:86550593-86550812(-)$1	219	63	90	20.3824
uuuuaauaaaaauuuucagaaaauuua	chr11:77525325-77525544(+)$1	219	144	171	16.5775
AGAUCUGCCAGAUUAUGAACGGAGGCC	chr16:32961671-32961890(+)$1	219	114	141	21.0554
ACAAAGCCAAAUUGCAAAUCAGGCUUU	chr2:103606132-103606350(-)$1	218	50	77	22.1213
UCUUUUGUUUCCCUCAUUUUAAUCCAA	chr11:116711164-116711390(-)$1	226	186	213	21.7500
GGUUCUCAACAUUUUUCAUCAUGGGAU	chr16:91671953-91672177(+)$1	224	123	150	22.1003
UUGGACCCUUAAAAAUUAGAAUAUGgg	chr7:117203262-117203483(-)$1	221	75	102	20.7426
AGCAGGUACCUCCUGAUAAUGUGCCCU	chr9:44759981-44760199(-)$1	218	122	149	21.1821
GAAUUCUGCUGCUUCUCCCCAGGCUGA	chr19:46729792-46730005(+)$1	213	112	139	21.8533
UAGCCAUGGCCUCUCCCUUUCUGUGAU	chr11:120500776-120500988(-)$1	212	53	80	20.8313
GCCUACGUAUUCACCCUCCUAGUAAGC	chr1:24620730-24620954(-)$1	224	94	121	18.4707
cgacgucgcuuuuugauccuucgaugu	chr9:123370975-123371189(+)$1	214	138	165	23.0678
CCUCACUUGCAAUAAUUACAAAAACAA	chr9:120864409-120864628(+)$1	219	129	156	17.6862
AGGAGGGAAAUCUUCAUUUCUUUUUCC	chr13:55415134-55415356(+)$1	222	4	31	22.1048
GCCCACAGAUGCCCCUCGAAACCUCAU	chr14:32912577-32912794(+)$1	217	56	83	18.4343
UCAAACUGCUCCAGUAUUAGUUGCAGG	chr15:98761881-98762096(-)$1	215	110	137	19.3909
UGAUUGUAAAGGGUAACAUCAAAUUAG	chr6:51411132-51411347(-)$1	215	106	133	20.5209
GCACGUUCUGAUCAUACUGCUAAGCAU	chr18:10817038-10817257(+)$1	219	32	59	22.6180
UUGGAGUGCAGAUAGAAGGAGCAAGCC	chr16:8689741-8689962(-)$1	221	116	143	22.5435
GGGAGCACCUCUCAGUCUUUGGUGCUU	chr11:101350969-101351182(-)$1	213	127	154	21.7131
uuuuuuguuuuuuuucuucuuCAAAUU	chr7:91257833-91258052(-)$1	219	31	58	20.2120
ACUCCUGCUGCUGCAGUCACUGUGGGA	chr4:128826817-128827041(-)$1	224	162	189	23.3056
CACACACGCCUUCUCAACCCUGGUAAC	chr7:133272998-133273215(-)$1	217	132	159	20.4234
cgacgucgcuuuuugauccuucgaugu	chr9:123371054-123371291(+)$1	237	59	86	23.0678
AAUCUGUUACAAAGACAAAUUAGAGGG	chr6:52496478-52496697(-)$1	219	128	155	22.5929
CUCUUCCGACACACCUAUAUAGUCAGG	chr11:8334167-8334380(-)$1	213	70	97	21.2849
AUCAGCCACACAUCAUCACUCUGCAGC	chr16:18255512-18255732(-)$1	220	158	185	21.3402
GCCGGUGUCUCCUAAGUUCUCCACUCG	chr2:152719351-152719566(+)$1	215	39	66	22.5433
UGAUCUUGUGUAUUUACUGAAAUAAAU	chr9:4296524-4296734(-)$1	210	96	123	23.5048
GAAUCUUCAUAUUCUAAACUUUGAGAA	chr5:77428495-77428719(+)$1	224	154	181	22.8029
cgacgucgcuuuuugauccuucgaugu	chr9:123371013-123371249(+)$1	236	100	127	23.0678
GAGGCACCACGGCUGGCUUAUUUGGGU	chr7:109334379-109334599(-)$1	220	102	129	23.7801
CUGAAAGAAUUAACUUUGCAAUUUGAG	chr8:89384812-89385022(+)$1	210	10	37	19.4116
ACUUAAAGAUUGUUUUCCUUCUUCUUU	chr10:117261600-117261811(-)$1	211	48	75	21.2258
ugccacAGGAACUUAGAACUUACCAGG	chr6:65030400-65030610(+)$1	210	68	95	21.8491
augucggcucuuccuaucguuaagcag	chr7:117203181-117203412(-)$1	231	134	161	23.1773
UGGACUUUACCUAUGUUUCUUGUCCAC	chr4:132383056-132383277(-)$1	221	57	84	21.0027

#DB
((..((((..............)))).	chr2:138112851-138113067(+)$1	1	60	87	22.6316
.((((.(((...........)))))))	chr18:46767914-46768129(+)$1	1	54	81	21.9640
((((((...............)))...	chr2:125657199-125657411(-)$1	1	42	69	18.2084
((.((.(((............))).))	chr16:91858415-91858632(+)$1	1	185	212	23.9316
((.((((................))))	chr13:93155453-93155664(+)$1	1	2	29	22.1068
((..((((..............)))).	chr9:85637429-85637654(-)$1	1	120	147	22.4859
(((((..(((...........))).))	chr5:92715608-92715827(-)$1	1	75	102	22.0770
((..((((..............)))).	chr4:4693534-4693762(-)$1	1	10	37	22.3052
((.((................))))))	chr11:75315974-75316190(+)$1	1	135	162	21.0377
((((..(((............)))..)	chr7:52721599-52721817(-)$1	1	92	119	23.6622
((((((...............)))...	chr2:125657212-125657423(-)$1	1	54	81	18.2084
))((.((((............)))).)	chr2:179926826-179927049(-)$1	1	39	66	22.6186
(((((((.(...........))))).)	chr5:149364250-149364464(-)$1	1	0	27	22.1933
..(((................)))..)	chr6:30606454-30606673(-)$1	1	135	162	22.2037
((((((((................)))	chr10:57236544-57236759(-)$1	1	111	138	22.1198
....(((..............)))(((	chr11:120489699-120489923(-)$1	1	159	186	18.8150
(((.((((.............))))))	chr18:9995609-9995828(-)$1	1	77	104	22.2845
(..((.(((.............))).)	chr7:117203223-117203443(-)$1	1	165	192	23.1773
((....(((................))	chr2:103897154-103897377(+)$1	1	69	96	21.4545
((.(((..((...........))..))	chr10:35429476-35429691(-)$1	1	11	38	21.6061
.((((((((............))))))	chr11:86550593-86550812(-)$1	1	63	90	20.3824
((((((..................)))	chr11:77525325-77525544(+)$1	1	144	171	16.5775
(((((((((..............))).	chr16:32961671-32961890(+)$1	1	114	141	21.0554
.(((((((.............))))))	chr2:103606132-103606350(-)$1	1	50	77	22.1213
((((..(((...........)))..))	chr11:116711164-116711390(-)$1	1	186	213	21.7500
(..(((((.............))))).	chr16:91671953-91672177(+)$1	1	123	150	22.1003
((((((((................)))	chr7:117203262-117203483(-)$1	1	75	102	20.7426
((..(((((...........)))))))	chr9:44759981-44760199(-)$1	1	122	149	21.1821
((((((.(((...........))).))	chr19:46729792-46730005(+)$1	1	112	139	21.8533
((..(((((...........))))).)	chr11:120500776-120500988(-)$1	1	53	80	20.8313
((.(((...............))).))	chr1:24620730-24620954(-)$1	1	94	121	18.4707
((((((((.............))))))	chr9:123370975-123371189(+)$1	1	138	165	23.0678
(((((((((...............)))	chr9:120864409-120864628(+)$1	1	129	156	17.6862
((((((((((...........))))))	chr13:55415134-55415356(+)$1	1	4	31	22.1048
((.((.(((((.............)))	chr14:32912577-32912794(+)$1	1	56	83	18.4343
))...((((.............))))(	chr15:98761881-98762096(-)$1	1	110	137	19.3909
(((((................))))))	chr6:51411132-51411347(-)$1	1	106	133	20.5209
((((((.((.............)).))	chr18:10817038-10817257(+)$1	1	32	59	22.6180
.(((..(((...........)))..))	chr16:8689741-8689962(-)$1	1	116	143	22.5435
(((((((((...........)))))))	chr11:101350969-101351182(-)$1	1	127	154	21.7131
...((((..............))))..	chr7:91257833-91258052(-)$1	1	31	58	20.2120
((((((((.............))))))	chr4:128826817-128827041(-)$1	1	162	189	23.3056
((((...(((...........)))...	chr7:133272998-133273215(-)$1	1	132	159	20.4234
((((((((.............))))))	chr9:123371054-123371291(+)$1	1	59	86	23.0678
..(((.((..............)).))	chr6:52496478-52496697(-)$1	1	128	155	22.5929
(.((...(((...........))))))	chr11:8334167-8334380(-)$1	1	70	97	21.2849
...(((..((...........))..))	chr16:18255512-18255732(-)$1	1	158	185	21.3402
(((((((..............))).))	chr2:152719351-152719566(+)$1	1	39	66	22.5433
((((.((((............))))))	chr9:4296524-4296734(-)$1	1	96	123	23.5048
((((.((((............)))).)	chr5:77428495-77428719(+)$1	1	154	181	22.8029
((((((((.............))))))	chr9:123371013-123371249(+)$1	1	100	127	23.0678
(((((.(((.............)))))	chr7:109334379-109334599(-)$1	1	102	129	23.7801
((.(((...............))).))	chr8:89384812-89385022(+)$1	1	10	37	19.4116
(((((((((.............)))))	chr10:117261600-117261811(-)$1	1	48	75	21.2258
((((...((.............)).))	chr6:65030400-65030610(+)$1	1	68	95	21.8491
(..((.(((.............))).)	chr7:117203181-117203412(-)$1	1	134	161	23.1773
.((((................))))))	chr4:132383056-132383277(-)$1	1	57	84	21.0027

#PSSM
e : 0.15	c : 0.15	d : 0.12	f : 0.07	h : 0.07	b : 0.07	i : 0.07	! : 0.05	: : 0.05	g : 0.05	= : 0.03	[ : 0.03	a : 0.01	% : 0.01	" : 0.01	
e : 0.15	d : 0.14	g : 0.14	c : 0.12	! : 0.08	h : 0.08	f : 0.07	i : 0.07	= : 0.03	: : 0.01	b : 0.01	% : 0.01	[ : 0.01	" : 0.01	
! : 0.14	[ : 0.12	g : 0.12	c : 0.10	d : 0.08	h : 0.08	f : 0.07	e : 0.05	i : 0.05	b : 0.03	: : 0.03	= : 0.03	# : 0.01	% : 0.01	" : 0.01	
c : 0.17	d : 0.14	b : 0.12	g : 0.12	! : 0.08	f : 0.08	h : 0.07	i : 0.05	: : 0.03	= : 0.03	e : 0.03	[ : 0.01	# : 0.01	
c : 0.19	d : 0.15	g : 0.10	b : 0.08	h : 0.07	f : 0.05	! : 0.05	[ : 0.05	e : 0.05	i : 0.05	" : 0.05	= : 0.03	# : 0.01	: : 0.01	
d : 0.21	c : 0.14	[ : 0.12	g : 0.10	! : 0.07	y : 0.07	h : 0.05	e : 0.05	" : 0.05	= : 0.03	f : 0.03	i : 0.03	# : 0.01	
d : 0.21	c : 0.21	g : 0.08	x : 0.07	y : 0.07	e : 0.07	! : 0.05	" : 0.05	f : 0.03	[ : 0.03	i : 0.03	h : 0.01	^ : 0.01	= : 0.01	b : 0.01	
c : 0.24	d : 0.15	y : 0.08	g : 0.08	x : 0.07	e : 0.07	w : 0.05	b : 0.05	! : 0.03	f : 0.03	i : 0.03	[ : 0.01	h : 0.01	^ : 0.01	= : 0.01	
c : 0.24	w : 0.12	y : 0.12	v : 0.12	d : 0.08	x : 0.07	b : 0.07	e : 0.05	a : 0.01	h : 0.01	^ : 0.01	= : 0.01	i : 0.01	f : 0.01	
v : 0.24	w : 0.14	y : 0.14	t : 0.12	u : 0.10	x : 0.08	c : 0.07	b : 0.03	^ : 0.01	= : 0.01	e : 0.01	
t : 0.24	v : 0.24	w : 0.14	y : 0.14	u : 0.10	x : 0.08	^ : 0.01	e : 0.01	
v : 0.26	t : 0.24	w : 0.14	y : 0.14	u : 0.10	x : 0.08	^ : 0.01	
v : 0.26	t : 0.24	w : 0.14	y : 0.14	u : 0.10	x : 0.08	^ : 0.01	
v : 0.26	t : 0.24	w : 0.14	y : 0.14	u : 0.10	x : 0.08	^ : 0.01	
v : 0.26	t : 0.24	w : 0.14	y : 0.14	u : 0.10	x : 0.08	^ : 0.01	
v : 0.26	t : 0.24	w : 0.14	y : 0.14	u : 0.10	x : 0.08	^ : 0.01	
v : 0.26	t : 0.24	w : 0.14	y : 0.14	u : 0.10	x : 0.08	^ : 0.01	
v : 0.26	t : 0.24	w : 0.14	y : 0.14	u : 0.10	x : 0.08	^ : 0.01	
v : 0.26	t : 0.24	w : 0.14	y : 0.14	u : 0.10	x : 0.08	^ : 0.01	
v : 0.26	t : 0.24	w : 0.14	y : 0.14	u : 0.10	x : 0.08	^ : 0.01	
v : 0.26	w : 0.14	y : 0.14	t : 0.12	u : 0.10	x : 0.08	c : 0.05	e : 0.03	a : 0.01	^ : 0.01	i : 0.01	
c : 0.28	v : 0.14	d : 0.12	w : 0.08	y : 0.07	g : 0.07	b : 0.05	e : 0.05	h : 0.03	i : 0.03	^ : 0.01	x : 0.01	= : 0.01	
c : 0.33	d : 0.19	b : 0.10	y : 0.07	g : 0.07	e : 0.05	h : 0.03	i : 0.03	^ : 0.01	w : 0.01	x : 0.01	= : 0.01	v : 0.01	f : 0.01	
c : 0.29	d : 0.22	e : 0.07	2 : 0.07	g : 0.07	y : 0.05	b : 0.05	h : 0.03	i : 0.03	^ : 0.01	x : 0.01	= : 0.01	v : 0.01	f : 0.01	
d : 0.24	] : 0.15	2 : 0.10	e : 0.08	g : 0.08	c : 0.07	f : 0.05	> : 0.03	h : 0.03	= : 0.03	i : 0.03	y : 0.01	7 : 0.01	b : 0.01	
d : 0.14	g : 0.14	c : 0.12	] : 0.10	f : 0.08	b : 0.07	e : 0.07	h : 0.07	i : 0.05	> : 0.03	2 : 0.03	= : 0.03	3 : 0.01	7 : 0.01	
d : 0.14	g : 0.14	b : 0.12	c : 0.12	f : 0.10	h : 0.07	2 : 0.05	e : 0.05	i : 0.05	> : 0.03	= : 0.03	] : 0.01	5 : 0.01	3 : 0.01	7 : 0.01	

#score	1224.8331528203885
#seq	57
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_CDS_m2_run2.txt

#BEAR
ccc[cccnnnnncccccc:::	chr10:80254115-80254328(+)$1	213	105	126	9.6907
"""ddddnnnnnddddccc44	chr11:98831785-98832009(+)$1	224	172	193	12.4188
g!!a[bbnnnnnbb]a22ggg	chr16:18949214-18949429(+)$1	215	165	186	12.1508
c!!ddddnnnnndddd22ccc	chr10:42252894-42253113(+)$1	219	68	89	12.4035
=======nnnnn=========	chr7:125996002-125996212(-)$1	210	33	54	12.2177
dccc[bbnnnnnbbccc]ddd	chr13:44998322-44998537(+)$1	215	81	102	10.9804
ggg!!bbnnnnnbb22ggggg	chr14:32983860-32984079(+)$1	219	7	28	11.8269
f[ccc[annnnna]ccc22ff	chr12:103861490-103861713(-)$1	223	122	143	11.3402
ccc[cccnnnnnccc]ccc]f	chrX:161434875-161435087(+)$1	212	153	174	12.3792
f[bb[bbnnnnnbb333bb]f	chr11:120833594-120833807(-)$1	213	68	89	11.3954
"""ddddnnnnndddd4444d	chr2:84284828-84285044(-)$1	216	108	129	12.3339
bb[ddddnnnnndddd]bb44	chr11:120424888-120425102(-)$1	214	148	169	11.3963
ee!!cccnnnnnccc]eeeee	chr4:140872730-140872954(+)$1	224	21	42	12.2125
"""ddddnnnnndddd333ee	chr14:76410385-76410602(-)$1	217	123	144	12.6553
!!a[cccnnnnnccc]affff	chr17:74965221-74965437(+)$1	216	125	146	12.4209
ccc[cccnnnnncccccc]bb	chr19:3466458-3466671(-)$1	213	163	184	11.7026
$$$ddddnnnnndddd333ff	chr11:77505549-77505763(+)$1	214	137	158	11.9561
hhh[cccnnnnnccchhhhhh	chr18:34464241-34464454(+)$1	213	122	143	10.4647
c[bbcccnnnnnccc]bb333	chr10:62275415-62275633(-)$1	218	39	60	11.5427
gggggggnnnnnggggggg55	chr10:60885926-60886143(+)$1	217	79	100	10.2658
e!!ddddnnnnndddd]eeee	chr9:4308780-4308999(-)$1	219	176	197	12.2035
ee[ddddnnnnndddd]eeee	chr12:81743716-81743940(-)$1	224	187	208	11.7360
dddd!!annnnna22ddddcc	chr1:60204715-60204925(+)$1	210	90	111	10.4596
a!!ddddnnnnndddd22a]d	chr13:111185460-111185680(+)$1	220	136	157	12.3202
cc!!cccnnnnncccccc::D	chr7:31267436-31267651(+)$1	215	189	210	9.8207
fff!!bbnnnnnbb]ffffff	chr5:123237763-123237974(-)$1	211	45	66	10.9978
gggggggnnnnnggggggg::	chrM:4270-4485(-)$1	215	190	211	9.9941
$$$ddddnnnnnddddfffff	chr4:133036130-133036348(+)$1	218	54	75	11.2844
gggg[bbnnnnnbbggggggg	chrX:72692443-72692661(+)$1	218	142	163	11.7453
fff!!bbnnnnnbb]ffffff	chr13:49803693-49803910(+)$1	217	187	208	10.9978
gggggggnnnnnggggggggg	chr1:63591931-63592148(+)$1	217	93	114	11.5827
ddd[cccnnnnnccc]dddde	chrM:12473-12697(-)$1	224	48	69	11.0607
c[eeeeennnnneeeee]ccc	chr12:70322914-70323131(-)$1	217	156	177	10.9498
e####bbnnnnnbb333eeee	chr19:36956089-36956304(+)$1	215	97	118	12.1282
bb!!cccnnnnnccc22bb]h	chrM:12306-12529(-)$1	223	188	209	11.6400
ccc[cccnnnnnccccccbb[	chr4:75732237-75732456(-)$1	219	35	56	11.6637
eeeee[annnnna]eeeee33	chr19:5287807-5288025(-)$1	218	126	147	11.0239
gggggggnnnnnggggggg::	chr10:28916030-28916250(+)$1	220	175	196	9.9941
"""ddddnnnnndddd333cc	chrM:11748-11987(-)$1	239	210	231	12.7943
eeee[bbnnnnnbb]eeeee2	chr5:73718821-73719038(+)$1	217	65	86	10.8545
f!!ddddnnnnndddd]ffff	chr12:107044613-107044832(+)$1	219	68	89	12.1379
bb[ddddnnnnndddd]bb]a	chr2:129033925-129034142(+)$1	217	170	191	11.4503
####cccnnnnnccc333bb]	chrX:49407612-49407830(-)$1	218	125	146	12.7455
b[eeeeennnnneeeeebb]c	chr1:153631793-153632017(+)$1	224	80	101	10.4867
###ddddnnnnndddd22ccc	chr10:87610910-87611129(+)$1	219	94	115	12.2470
cc!!cccnnnnnccc]ccchh	chr4:132055078-132055296(-)$1	218	120	141	12.1571
c[bb!!annnnna22bbccc3	chr4:106233757-106233979(+)$1	222	118	139	10.5421
eeee[bbnnnnnbb22eeeee	chr4:151478235-151478452(+)$1	217	188	209	10.8610
eee!!bbnnnnnbb22eeeee	chr8:3427369-3427579(+)$1	210	152	173	11.1479
gggggggnnnnnggggggg::	chr9:21733520-21733730(+)$1	210	185	206	9.9941
=======nnnnn=========	chr3:41417793-41418003(+)$1	210	153	174	12.2177
eeeee[annnnna]eeeee44	chr7:135441389-135441606(-)$1	217	158	179	10.9180

#otherMatches

#Seq PSSM
GCAUGUGUCGUCCACUGCGAC	chr10:80254115-80254328(+)$1	213	105	126	9.6907
UCAAGGCUGCCUGCCUGGAUA	chr11:98831785-98832009(+)$1	224	172	193	12.4188
AAGGGCCGUGAUGGACAGUAC	chr16:18949214-18949429(+)$1	215	165	186	12.1508
UCCCCCACUCCCUGGGAAAGC	chr10:42252894-42253113(+)$1	219	68	89	12.4035
AGGAGGGAGACAUCCUCCUGG	chr7:125996002-125996212(-)$1	210	33	54	12.2177
CGAGUCAGUACGUGCUCAGGU	chr13:44998322-44998537(+)$1	215	81	102	10.9804
CAUGAUUGAUUGAAAGAUGGU	chr14:32983860-32984079(+)$1	219	7	28	11.8269
CAUCAUCCACAAGCUGACCGA	chr12:103861490-103861713(-)$1	223	122	143	11.3402
UGCGGAGAUGACUUUGGCGUU	chrX:161434875-161435087(+)$1	212	153	174	12.3792
GAGAAGAAGAUGUCCACUCCC	chr11:120833594-120833807(-)$1	213	68	89	11.3954
GAAACUUUGGAUGAGUGCAAG	chr2:84284828-84285044(-)$1	216	108	129	12.3339
GCAGCUUCAAGAGAGCAGCCG	chr11:120424888-120425102(-)$1	214	148	169	11.3963
ggggCAGCUCCACUGACCUCC	chr4:140872730-140872954(+)$1	224	21	42	12.2125
AGACGCGAGCCCCGCGGGGCG	chr14:76410385-76410602(-)$1	217	123	144	12.6553
CAUGAAGGUGCACUUGAAGUU	chr17:74965221-74965437(+)$1	216	125	146	12.4209
GCCACUCAGCCAGAGGGUGAG	chr19:3466458-3466671(-)$1	213	163	184	11.7026
UGGUUUGAGUAGCAAAAAAUU	chr11:77505549-77505763(+)$1	214	137	158	11.9561
UGUUGCCAACAAGGUAUGUCU	chr18:34464241-34464454(+)$1	213	122	143	10.4647
AAGGAGCUUCAUGCUACCACC	chr10:62275415-62275633(-)$1	218	39	60	11.5427
AGCCACUCUCCAAGUGGCUAA	chr10:60885926-60886143(+)$1	217	79	100	10.2658
CUUGCGAAAGACUCGUUGAAU	chr9:4308780-4308999(-)$1	219	176	197	12.2035
ggaauugaaaaccagucccuu	chr12:81743716-81743940(-)$1	224	187	208	11.7360
UCUGUACUGCUUGGUCAGAGU	chr1:60204715-60204925(+)$1	210	90	111	10.4596
CGACCCCACGACGGGGAAGCG	chr13:111185460-111185680(+)$1	220	136	157	12.3202
UGUAGGUCAGAAACCCACCUC	chr7:31267436-31267651(+)$1	215	189	210	9.8207
AGGCUGUACCACGCUCUUGGC	chr5:123237763-123237974(-)$1	211	45	66	10.9978
GUCCUAUGUGCAGUGGGAUCC	chrM:4270-4485(-)$1	215	190	211	9.9941
UUCUGCCGUCCAGGCACCGGG	chr4:133036130-133036348(+)$1	218	54	75	11.2844
CUGUGUCAGGAAGAACAGGAU	chrX:72692443-72692661(+)$1	218	142	163	11.7453
UGGUAAGGCCGUCUCCUGGGA	chr13:49803693-49803910(+)$1	217	187	208	10.9978
CACCAGGGUUGUCCUGGUGGC	chr1:63591931-63592148(+)$1	217	93	114	11.5827
GCAAUGAUUUUUUUGAUGUCG	chrM:12473-12697(-)$1	224	48	69	11.0607
AUUUUACACCAGGUAAGUUGG	chr12:70322914-70323131(-)$1	217	156	177	10.9498
UGAAAUGGGCCACAAGGAACU	chr19:36956089-36956304(+)$1	215	97	118	12.1282
CUGUUGAAGUUCUCAUGAGUU	chrM:12306-12529(-)$1	223	188	209	11.6400
UGGACCCCUUCAGGGCUACCG	chr4:75732237-75732456(-)$1	219	35	56	11.6637
UUGUAUCUUGAUGCUGCAACA	chr19:5287807-5288025(-)$1	218	126	147	11.0239
GGGGACUUAGACAGUCCUCUA	chr10:28916030-28916250(+)$1	220	175	196	9.9941
GAAGAUUAAUAAGAUUGAGGU	chrM:11748-11987(-)$1	239	210	231	12.7943
GUAUUUAUGACUUACAUGCAA	chr5:73718821-73719038(+)$1	217	65	86	10.8545
UUUCCUUUUUUUAAGGUGCUG	chr12:107044613-107044832(+)$1	219	68	89	12.1379
CGAGUCUGAGAUGGACAUGAG	chr2:129033925-129034142(+)$1	217	170	191	11.4503
CCAAGCACCGUUUGCAAUGAU	chrX:49407612-49407830(-)$1	218	125	146	12.7455
UGCAAGAAAAGCUCUUGAUUU	chr1:153631793-153632017(+)$1	224	80	101	10.4867
GUGGAUUGCGAAGAUUAUGUG	chr10:87610910-87611129(+)$1	219	94	115	12.2470
CCAAGGAGCAUAUCCAGGUAU	chr4:132055078-132055296(-)$1	218	120	141	12.1571
GUGCCUCUUCUUGCUGCCGCU	chr4:106233757-106233979(+)$1	222	118	139	10.5421
AGGUUUGGAGGACACUACCUG	chr4:151478235-151478452(+)$1	217	188	209	10.8610
CUGGCAGGUGCACUCACAGGG	chr8:3427369-3427579(+)$1	210	152	173	11.1479
ACAAGUGGCUUUCACUUGUCC	chr9:21733520-21733730(+)$1	210	185	206	9.9941
ACAUGGCUUGUUGCCGUGUGC	chr3:41417793-41418003(+)$1	210	153	174	12.2177
ACCUGGGCAGCACGCGGGUGG	chr7:135441389-135441606(-)$1	217	158	179	10.9180

#DB
(((.(((.....))))))...	chr10:80254115-80254328(+)$1	1	105	126	9.6907
...((((.....)))))))..	chr11:98831785-98832009(+)$1	1	172	193	12.4188
(..(.((.....)).)..)))	chr16:18949214-18949429(+)$1	1	165	186	12.1508
(..((((.....))))..)))	chr10:42252894-42253113(+)$1	1	68	89	12.4035
(((((((.....)))))))))	chr7:125996002-125996212(-)$1	1	33	54	12.2177
((((.((.....))))).)))	chr13:44998322-44998537(+)$1	1	81	102	10.9804
(((..((.....))..)))))	chr14:32983860-32984079(+)$1	1	7	28	11.8269
(.(((.(.....).)))..))	chr12:103861490-103861713(-)$1	1	122	143	11.3402
(((.(((.....))).))).)	chrX:161434875-161435087(+)$1	1	153	174	12.3792
(.((.((.....))...)).)	chr11:120833594-120833807(-)$1	1	68	89	11.3954
...((((.....))))....)	chr2:84284828-84285044(-)$1	1	108	129	12.3339
((.((((.....)))).))..	chr11:120424888-120425102(-)$1	1	148	169	11.3963
((..(((.....))).)))))	chr4:140872730-140872954(+)$1	1	21	42	12.2125
...((((.....))))...))	chr14:76410385-76410602(-)$1	1	123	144	12.6553
..(.(((.....))).)))))	chr17:74965221-74965437(+)$1	1	125	146	12.4209
(((.(((.....)))))).))	chr19:3466458-3466671(-)$1	1	163	184	11.7026
...((((.....))))...))	chr11:77505549-77505763(+)$1	1	137	158	11.9561
(((.(((.....)))))))))	chr18:34464241-34464454(+)$1	1	122	143	10.4647
(.(((((.....))).))...	chr10:62275415-62275633(-)$1	1	39	60	11.5427
(((((((.....)))))))..	chr10:60885926-60886143(+)$1	1	79	100	10.2658
(..((((.....)))).))))	chr9:4308780-4308999(-)$1	1	176	197	12.2035
((.((((.....)))).))))	chr12:81743716-81743940(-)$1	1	187	208	11.7360
((((..(.....)..))))((	chr1:60204715-60204925(+)$1	1	90	111	10.4596
(..((((.....))))..).)	chr13:111185460-111185680(+)$1	1	136	157	12.3202
((..(((.....))))))..)	chr7:31267436-31267651(+)$1	1	189	210	9.8207
(((..((.....)).))))))	chr5:123237763-123237974(-)$1	1	45	66	10.9978
(((((((.....)))))))..	chrM:4270-4485(-)$1	1	190	211	9.9941
...((((.....)))))))))	chr4:133036130-133036348(+)$1	1	54	75	11.2844
((((.((.....)))))))))	chrX:72692443-72692661(+)$1	1	142	163	11.7453
(((..((.....)).))))))	chr13:49803693-49803910(+)$1	1	187	208	10.9978
(((((((.....)))))))((	chr1:63591931-63592148(+)$1	1	93	114	11.5827
(((.(((.....))).))))(	chrM:12473-12697(-)$1	1	48	69	11.0607
(.(((((.....))))).)))	chr12:70322914-70323131(-)$1	1	156	177	10.9498
(....((.....))...))))	chr19:36956089-36956304(+)$1	1	97	118	12.1282
((..(((.....)))..)).)	chrM:12306-12529(-)$1	1	188	209	11.6400
(((.(((.....))))))((.	chr4:75732237-75732456(-)$1	1	35	56	11.6637
(((((.(.....).)))))..	chr19:5287807-5288025(-)$1	1	126	147	11.0239
(((((((.....)))))))..	chr10:28916030-28916250(+)$1	1	175	196	9.9941
...((((.....))))...))	chrM:11748-11987(-)$1	1	210	231	12.7943
((((.((.....)).))))).	chr5:73718821-73719038(+)$1	1	65	86	10.8545
(..((((.....)))).))))	chr12:107044613-107044832(+)$1	1	68	89	12.1379
((.((((.....)))).)).)	chr2:129033925-129034142(+)$1	1	170	191	11.4503
....(((.....)))...)).	chrX:49407612-49407830(-)$1	1	125	146	12.7455
(.(((((.....))))))).)	chr1:153631793-153632017(+)$1	1	80	101	10.4867
...((((.....))))..)))	chr10:87610910-87611129(+)$1	1	94	115	12.2470
((..(((.....))).)))))	chr4:132055078-132055296(-)$1	1	120	141	12.1571
(.((..(.....)..))))).	chr4:106233757-106233979(+)$1	1	118	139	10.5421
((((.((.....))..)))))	chr4:151478235-151478452(+)$1	1	188	209	10.8610
(((..((.....))..)))))	chr8:3427369-3427579(+)$1	1	152	173	11.1479
(((((((.....)))))))..	chr9:21733520-21733730(+)$1	1	185	206	9.9941
(((((((.....)))))))))	chr3:41417793-41418003(+)$1	1	153	174	12.2177
(((((.(.....).)))))..	chr7:135441389-135441606(-)$1	1	158	179	10.9180

#PSSM
c : 0.19	e : 0.17	g : 0.15	f : 0.09	" : 0.07	b : 0.07	d : 0.05	= : 0.03	$ : 0.03	# : 0.03	! : 0.01	h : 0.01	a : 0.01	
c : 0.13	g : 0.13	e : 0.13	! : 0.11	[ : 0.11	" : 0.07	b : 0.05	# : 0.05	= : 0.03	$ : 0.03	d : 0.03	f : 0.03	h : 0.01	
! : 0.17	g : 0.13	e : 0.13	c : 0.11	" : 0.07	b : 0.05	[ : 0.05	# : 0.05	= : 0.03	$ : 0.03	d : 0.03	f : 0.03	a : 0.01	h : 0.01	
d : 0.28	! : 0.15	[ : 0.13	g : 0.11	e : 0.11	b : 0.05	= : 0.03	c : 0.03	# : 0.03	a : 0.01	
c : 0.26	d : 0.26	[ : 0.11	! : 0.11	g : 0.09	e : 0.07	= : 0.03	# : 0.01	
d : 0.26	c : 0.24	b : 0.21	g : 0.09	[ : 0.05	= : 0.03	! : 0.03	e : 0.03	
d : 0.26	c : 0.24	b : 0.21	a : 0.09	g : 0.09	= : 0.03	e : 0.03	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
d : 0.26	c : 0.24	b : 0.21	a : 0.09	g : 0.09	= : 0.03	e : 0.03	
d : 0.26	c : 0.24	b : 0.21	g : 0.09	] : 0.05	= : 0.03	2 : 0.03	e : 0.03	
c : 0.28	d : 0.26	g : 0.11	2 : 0.09	] : 0.07	e : 0.07	= : 0.03	3 : 0.03	
d : 0.28	c : 0.11	] : 0.11	g : 0.11	e : 0.09	2 : 0.07	3 : 0.05	= : 0.03	f : 0.03	a : 0.01	h : 0.01	b : 0.01	
c : 0.17	e : 0.15	g : 0.13	3 : 0.11	2 : 0.09	] : 0.09	f : 0.05	= : 0.03	b : 0.03	d : 0.03	4 : 0.01	a : 0.01	h : 0.01	
e : 0.17	c : 0.15	g : 0.13	b : 0.11	2 : 0.09	f : 0.09	3 : 0.07	= : 0.03	] : 0.03	d : 0.03	4 : 0.01	h : 0.01	
e : 0.17	g : 0.15	c : 0.13	b : 0.13	f : 0.09	3 : 0.07	d : 0.05	: : 0.03	= : 0.03	2 : 0.01	4 : 0.01	] : 0.01	h : 0.01	a : 0.01	
e : 0.15	f : 0.13	c : 0.11	] : 0.11	: : 0.09	4 : 0.07	g : 0.07	b : 0.05	= : 0.03	d : 0.03	h : 0.03	3 : 0.03	5 : 0.01	
f : 0.17	e : 0.15	c : 0.11	: : 0.07	g : 0.07	4 : 0.05	d : 0.05	h : 0.05	3 : 0.05	= : 0.03	b : 0.01	5 : 0.01	D : 0.01	[ : 0.01	2 : 0.01	a : 0.01	] : 0.01	

#score	595.9132418607096
#seq	52
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_CDS_m1_run2.txt

#BEAR
$bbeeeeedddd[aooooooa]dddd]eeeee]b	chr19:4318997-4319213(-)$1	216	56	90	12.2223
iiiiiii[ccc[bboooooobb22ccc]iiiiii	chr11:30018356-30018567(-)$1	211	174	208	15.6247
"""ccc!!ddddcccnnnnnccc]dddd22cccb	chr1:60533594-60533812(+)$1	218	125	159	11.5392
::gggggggddddoooooodddd4444ggggggg	chr15:76499257-76499478(-)$1	221	1	35	12.4717
diiiiiiiiiddddoooooodddd]iiiiiiiii	chr14:52803535-52803749(-)$1	214	77	111	15.6629
iiiiiiiii[ddddnnnnndddd22iiiiiiiii	chr13:69765294-69765507(+)$1	213	81	115	12.6230
====ccc!!ccc!!aooooooa22ccc333ccc]	chr4:48481455-48481673(-)$1	218	48	82	15.5627
!!iiiiiiiiicccooooooccc]iiiiiiiii2	chr14:58232022-58232244(-)$1	222	99	133	16.3759
!ccc[ccc####cccnnnnnccc333cccccc22	chr4:123076522-123076737(-)$1	215	119	153	12.4935
cc!!ggggggg[bboooooobbggggggg]ccc]	chr7:87872805-87873023(-)$1	218	61	95	15.1781
!ccc[bb[dddd[aooooooaddddbb]ccc22c	chr5:77735380-77735594(-)$1	214	88	122	13.6537
eeee[eeeee!!bboooooobb22eeeee]eeee	chr17:80603454-80603673(-)$1	219	148	182	12.9641
ee[bb!!ccc[cccooooooccc22cccbb]eee	chr2:144572656-144572876(+)$1	220	137	171	14.3235
cggggggg!!ddddccclllccc333dddd4444	chr6:136752789-136753014(-)$1	225	144	178	11.4437
gggggggbb[ddddooooooddddbb]ggggggg	chr1:44230994-44231215(+)$1	221	184	218	14.1406
:ggggggg"""cccooooooccc333ggggggg:	chr17:45545217-45545435(-)$1	218	4	38	14.9561
ddd"""dddd"""aooooooa333dddd333ddd	chr8:87367864-87368085(-)$1	221	176	210	14.1662
dddd:ccc!!ddddoooooodddd22ccc:gggg	chr6:134434213-134434426(-)$1	213	104	138	12.8700
:dddd[bba"""bboooooobb333a]bb]dddd	chr17:22989115-22989334(-)$1	219	37	71	12.2849
####ccc!!eeeeeooooooeeeee]ccc22ggg	chr11:77505142-77505357(+)$1	215	128	162	14.9298
b[ggggggg"""bboooooobb4444ggggggg2	chr17:88388686-88388900(+)$1	214	50	84	15.4070
[eeeee[eeeee[bboooooobb]eeeee]eeee	chr2:29745306-29745522(+)$1	216	21	55	11.5543
fffff[dddd!!bboooooobb333dddd]ffff	chr17:71974648-71974865(+)$1	217	32	66	13.2264
=!!ccc####cccpppppppccc333ccc333==	chr11:75126472-75126688(-)$1	216	127	161	11.4848
a[bbeeeeeeeeeeooooooeeeee333eeeee]	chr3:36855519-36855732(+)$1	213	118	152	12.8580
bbb####eeeeebboooooobb]eeeee4444bb	chr17:35278704-35278918(+)$1	214	55	89	13.1399
[ccc[a[eeeee[annnnnaeeeee]a]ccc]a]	chr10:93508195-93508405(+)$1	210	37	71	11.3564
ffff!!bb!!ddddoooooodddd]bb22fffff	chr17:35273057-35273278(+)$1	221	146	180	13.0797
(eeeee[ccc!!bboooooobb22ccc]eeeee2	chr9:95810812-95811028(+)$1	216	65	99	12.9993
gggg!!a"""ddddoooooodddd22a22ggggg	chr19:36963223-36963437(+)$1	214	46	80	15.8270
[ggggggg[dddd[annnnna]dddd]ggggggg	chrX:9785768-9785983(-)$1	215	26	60	11.8101
!!hhhhhhhh[cccooooooccc]hhhhhhhh22	chr8:63406050-63406266(-)$1	216	5	39	12.8628
==$$$$$gggggggooooooggggggg333====	chr1:138523466-138523680(+)$1	214	105	139	15.0747
::ccc[ccc!!cccooooooccc22ccc]ccccc	chr8:93575480-93575697(+)$1	217	85	119	14.0926
gggggg!!eeeeerrrrrrrrreeeee]gggggg	chr2:5950313-5950539(+)$1	226	40	74	10.9449
[bb####eeeee!!aooooooa22eeeeebbccc	chr9:43960908-43961120(-)$1	212	126	160	12.7563
b!!ccc"""cccddddllldddd]ccc333ccc2	chr14:65639061-65639273(+)$1	212	131	165	11.8429
cc[ccc####ddddoooooodddd333ccc]ccc	chr7:51791266-51791479(-)$1	213	147	181	16.0630
iiiiii[gggggggooooooggggggg55555ii	chr8:46118767-46118984(+)$1	217	146	180	11.5248
cc[ccc[gggggggooooooggggggg333cccc	chr11:72260570-72260790(+)$1	220	123	157	15.4889
======ccc[ddddoooooodddd]ccc22====	chr11:17847742-17847954(-)$1	212	95	129	15.9286
hhh"""ddddddddoooooodddd22dddd]hhh	chr14:31845595-31845810(+)$1	215	5	39	13.2532
b[a!!bb[ccc[aooooooaccc]bb]abb]hhh	chr11:57866066-57866285(+)$1	219	18	52	12.7371
##a!!ggggggg[aooooooa]ggggggg22add	chr14:52824585-52824800(-)$1	215	38	72	14.9892
ccc[bb!!ffffffooooooffffff]bb333cc	chr2:37240692-37240907(-)$1	215	142	176	12.8849
ggggccc"""a[bbnnnnnbb]a333ccc]gggg	chr6:29383488-29383708(+)$1	220	70	104	12.3428
dddbb"""ffffffooooooffffff4444bb]d	chr7:30562325-30562541(+)$1	216	93	127	11.7649
===####eeeeerrrrrrrrreeeee========	chr6:71546696-71546914(-)$1	218	15	49	11.3925
####ccc"""ddddoooooodddd22ccc333bb	chr4:98403114-98403331(+)$1	217	42	76	15.8033
"""ccc[==========lll==========]ccc	chr1:24619252-24619471(+)$1	219	169	203	12.6056
cc[a!!ccc!!cccooooooccc]ccc]acccdd	chrX:108773314-108773532(-)$1	218	43	77	15.7353
ggggggg[cccrrrrrrrrrccc]ggggggg888	chr17:32190712-32190936(+)$1	224	100	134	9.8547

#otherMatches

#Seq PSSM
GUCCAUCAACAGCCUCUACUGCCUGUCUGAUGAG	chr19:4318997-4319213(-)$1	216	56	90	12.2223
GUUCCAGCUCAACAGAGAGGUGGAUGACCUGGAA	chr11:30018356-30018567(-)$1	211	174	208	15.6247
UGGGAACUAUGUUGAGUCCAUCAUGCAUUAUUCG	chr1:60533594-60533812(+)$1	218	125	159	11.5392
ACUGCCCUGUGCCGUCGAUGGCAGAACCGGGGCA	chr15:76499257-76499478(-)$1	221	1	35	12.4717
UAUUGAUGCCAUUGUUGUAUCGGUGGGUGUUGAU	chr14:52803535-52803749(-)$1	214	77	111	15.6629
GUGUCUGCUGAGUUGCCAGGACUGAAGUGGAUGC	chr13:69765294-69765507(+)$1	213	81	115	12.6230
GUAAGUGCCCAUCUCUCUAGUGCCAUGACUCACA	chr4:48481455-48481673(-)$1	218	48	82	15.5627
UGUUCUUUUGGGCGAAGUGCUGCGUUGGAAGAAG	chr14:58232022-58232244(-)$1	222	99	133	16.3759
AUGGACUGAUCUCCUCAGCAAGGCAGCAGCCAGG	chr4:123076522-123076737(-)$1	215	119	153	12.4935
CCAAGUGGCUUGUGACGUCCCAGAGCUGCAGGAU	chr7:87872805-87873023(-)$1	218	61	95	15.1781
UGUAGGAAGAGUUGGAAGAACAUUCUCGUACUCC	chr5:77735380-77735594(-)$1	214	88	122	13.6537
GAUCAAGAUCAGCUUCACUCAGAAGAUCUAGGUC	chr17:80603454-80603673(-)$1	219	148	182	12.9641
GGAUGCAGGAGCUCAGGUAGGAGGGUCCCACCCG	chr2:144572656-144572876(+)$1	220	137	171	14.3235
CUGGGGAAAGGUGGCGCCAAGCGACACCGCAAGG	chr6:136752789-136753014(-)$1	225	144	178	11.4437
UUGUAGAGUACUAUCAAUAUGUGGACUUUUACAG	chr1:44230994-44231215(+)$1	221	184	218	14.1406
AAUAUAGCUGAUGAGAAAUGUCAGUUGCUAUAUA	chr17:45545217-45545435(-)$1	218	4	38	14.9561
GGUUUAUCUGGAGGGAAGAACAGGCAGAGGCACC	chr8:87367864-87368085(-)$1	221	176	210	14.1662
AGGUAUCGAAGUUGGACGGACAGCACCGACAGGU	chr6:134434213-134434426(-)$1	213	104	138	12.8700
UGGGCAUCCGAGAGAUCAUGCUAGAGAGAAGCCC	chr17:22989115-22989334(-)$1	219	37	71	12.2849
GAAAACAAAUCUGGAGAGACCCAGGCUGUAGAUA	chr11:77505142-77505357(+)$1	215	128	162	14.9298
UGCUCUUAACUCAGUUGUUUCUUUUUUUAGGAGA	chr17:88388686-88388900(+)$1	214	50	84	15.4070
AGCCGCCGCGGGAGCCGGACUGCAUCCGCCGCGG	chr2:29745306-29745522(+)$1	216	21	55	11.5543
UUUUUCUUCCAGGAAAGUCAUCAAAGGAAAAAAA	chr17:71974648-71974865(+)$1	217	32	66	13.2264
GAUGGCCAUCACUUACCCACAGUUCAGUUUGAUU	chr11:75126472-75126688(-)$1	216	127	161	11.4848
CCUGGUGGCUUUGUGCUUUGACAGAAUUGCUACA	chr3:36855519-36855732(+)$1	213	118	152	12.8580
CCAUCUCUCUUCCAGAUCAAUGUGGGGACUACUG	chr17:35278704-35278918(+)$1	214	55	89	13.1399
GUCAUGGCUGGAAGGAACACUCCGGACUUGGGAU	chr10:93508195-93508405(+)$1	210	37	71	11.3564
AGGAUGCGCCUGAUUUUCUUGUCAUUGACUCUUU	chr17:35273057-35273278(+)$1	221	146	180	13.0797
UUUUAUUUUUUUUAAUCCAGUAUCAAAUGUGAAU	chr9:95810812-95811028(+)$1	216	65	99	12.9993
GGAGCUGGAAUUUAUUUUGCUGAGAACUCUUCCA	chr19:36963223-36963437(+)$1	214	46	80	15.8270
UCUUCAUAGAGGAUGGAAAACUUUUUAUGUGGGG	chrX:9785768-9785983(-)$1	215	26	60	11.8101
UUAGAGAACUGUUACCUCAUUAAAAGUUCUUUCC	chr8:63406050-63406266(-)$1	216	5	39	12.8628
UGUUUUGGACAAUGAGGCGCCAUUGUCACUUAUU	chr1:138523466-138523680(+)$1	214	105	139	15.0747
CUGUUGCUGUCUAACAUACUUUACCCAGGGAUGC	chr8:93575480-93575697(+)$1	217	85	119	14.0926
aaauuuuuguuauuaauuucuuauagcuaaauuu	chr2:5950313-5950539(+)$1	226	40	74	10.9449
AGGAUGAUGGCUAUGAUGUGCCUAAGCCACCCGU	chr9:43960908-43961120(-)$1	212	126	160	12.7563
CUAUCCUUCAGGCGUGAUCUAUGACCUCCUGGAG	chr14:65639061-65639273(+)$1	212	131	165	11.8429
CCGUGGAAAAUGGCUACGAUGCCAACGCCAAGGU	chr7:51791266-51791479(-)$1	213	147	181	16.0630
CUCUUCCCUCGCAGCUGCCUCUGUGGGAUCUUGA	chr8:46118767-46118984(+)$1	217	146	180	11.5248
GCUGUCCUUGCUGGCUCAACCCAGCAACUUGAUG	chr11:72260570-72260790(+)$1	220	123	157	15.4889
GAGUAUGGAUUGGUGAAACUGCUAUUCCUUGUAC	chr11:17847742-17847954(-)$1	212	95	129	15.9286
UCCCCUGAGUAUAAAGCUGCUUGUAAACUCUGGG	chr14:31845595-31845810(+)$1	215	5	39	13.2532
CAGUCCUUCAGAGGGAACACCUGCAGUCGGCAGC	chr11:57866066-57866285(+)$1	219	18	52	12.7371
AAGUCACCUGAGGAAAGUACUGUUCAGGUCCCCA	chr14:52824585-52824800(-)$1	215	38	72	14.9892
GCAAGUAAUUUUAGUCAAAUCUAAGAAGCAAAUG	chr2:37240692-37240907(-)$1	215	142	176	12.8849
CGUGGAAGAAGAUCCAGCAGAACACAUUCACGCG	chr6:29383488-29383708(+)$1	220	70	104	12.3428
UGUAGCAAGGCCUUCAGGCAGAGGUCCCACCUGA	chr7:30562325-30562541(+)$1	216	93	127	11.7649
UUAUUAAAUUCAGACAGAAAAUGGAUUGAAAAAC	chr6:71546696-71546914(-)$1	218	15	49	11.3925
GAAGCAUGAAGCUAGAAGAAUAGCGAGUGACAGU	chr4:98403114-98403331(+)$1	217	42	76	15.8033
AGGAUAAUACUAUGCCUUCCAGGCAUAGUAAUGU	chr1:24619252-24619471(+)$1	219	169	203	12.6056
UGAGAACCAAAGUACAAAUUUGCCUGGACCAGGA	chrX:108773314-108773532(-)$1	218	43	77	15.7353
GGCUGUUGCUGAUCGACUCCUGGAAAUAGCCAAC	chr17:32190712-32190936(+)$1	224	100	134	9.8547

#DB
.(((((((((((.(......).)))).))))).)	chr19:4318997-4319213(-)$1	1	56	90	12.2223
(((((((.(((.((......))..))).))))))	chr11:30018356-30018567(-)$1	1	174	208	15.6247
...(((..(((((((.....))).))))..))))	chr1:60533594-60533812(+)$1	1	125	159	11.5392
..(((((((((((......))))....)))))))	chr15:76499257-76499478(-)$1	1	1	35	12.4717
((((((((((((((......)))).)))))))))	chr14:52803535-52803749(-)$1	1	77	111	15.6629
(((((((((.((((.....))))..)))))))))	chr13:69765294-69765507(+)$1	1	81	115	12.6230
(((((((..(((..(......)..)))...))).	chr4:48481455-48481673(-)$1	1	48	82	15.5627
..((((((((((((......))).))))))))).	chr14:58232022-58232244(-)$1	1	99	133	16.3759
.(((.(((....(((.....)))...))))))..	chr4:123076522-123076737(-)$1	1	119	153	12.4935
((..(((((((.((......))))))))).))).	chr7:87872805-87873023(-)$1	1	61	95	15.1781
.(((.((.((((.(......))))))).)))..)	chr5:77735380-77735594(-)$1	1	88	122	13.6537
((((.(((((..((......))..))))).))))	chr17:80603454-80603673(-)$1	1	148	182	12.9641
((.((..(((.(((......)))..))))).)))	chr2:144572656-144572876(+)$1	1	137	171	14.3235
((((((((..(((((((...)))...))))....	chr6:136752789-136753014(-)$1	1	144	178	11.4437
(((((((((.((((......)))))).)))))))	chr1:44230994-44231215(+)$1	1	184	218	14.1406
.(((((((...(((......)))...))))))).	chr17:45545217-45545435(-)$1	1	4	38	14.9561
(((...((((...(......)...))))...)))	chr8:87367864-87368085(-)$1	1	176	210	14.1662
)))).(((..((((......))))..))).((((	chr6:134434213-134434426(-)$1	1	104	138	12.8700
.((((.(((...((......))...).)).))))	chr17:22989115-22989334(-)$1	1	37	71	12.2849
....(((..(((((......))))).)))..)))	chr11:77505142-77505357(+)$1	1	128	162	14.9298
(.(((((((...((......))....))))))).	chr17:88388686-88388900(+)$1	1	50	84	15.4070
.(((((.(((((.((......)).))))).))))	chr2:29745306-29745522(+)$1	1	21	55	11.5543
(((((.((((..((......))...)))).))))	chr17:71974648-71974865(+)$1	1	32	66	13.2264
(..(((....(((.......)))...)))...))	chr11:75126472-75126688(-)$1	1	127	161	11.4848
(.((((((((((((......)))))...))))).	chr3:36855519-36855732(+)$1	1	118	152	12.8580
(((....(((((((......)).)))))....))	chr17:35278704-35278918(+)$1	1	55	89	13.1399
.(((.(.(((((.(.....)))))).).))).).	chr10:93508195-93508405(+)$1	1	37	71	11.3564
((((..((..((((......)))).))..)))))	chr17:35273057-35273278(+)$1	1	146	180	13.0797
.(((((.(((..((......))..))).))))).	chr9:95810812-95811028(+)$1	1	65	99	12.9993
((((..(...((((......))))..)..)))))	chr19:36963223-36963437(+)$1	1	46	80	15.8270
.(((((((.((((.(.....).)))).)))))))	chrX:9785768-9785983(-)$1	1	26	60	11.8101
..((((((((.(((......))).))))))))..	chr8:63406050-63406266(-)$1	1	5	39	12.8628
((.....(((((((......)))))))...))))	chr1:138523466-138523680(+)$1	1	105	139	15.0747
..(((.(((..(((......)))..))).)))((	chr8:93575480-93575697(+)$1	1	85	119	14.0926
((((((..(((((.........))))).))))))	chr2:5950313-5950539(+)$1	1	40	74	10.9449
.((....(((((..(......)..))))))))))	chr9:43960908-43961120(-)$1	1	126	160	12.7563
(..(((...(((((((...)))).)))...))).	chr14:65639061-65639273(+)$1	1	131	165	11.8429
((.(((....((((......))))...))).)))	chr7:51791266-51791479(-)$1	1	147	181	16.0630
((((((.(((((((......))))))).....))	chr8:46118767-46118984(+)$1	1	146	180	11.5248
((.(((.(((((((......)))))))...))))	chr11:72260570-72260790(+)$1	1	123	157	15.4889
(((((((((.((((......)))).)))..))))	chr11:17847742-17847954(-)$1	1	95	129	15.9286
(((...((((((((......))))..)))).)))	chr14:31845595-31845810(+)$1	1	5	39	13.2532
(.(..((.(((.(......)))).)).))).)))	chr11:57866066-57866285(+)$1	1	18	52	12.7371
..(..(((((((.(......).)))))))..)))	chr14:52824585-52824800(-)$1	1	38	72	14.9892
(((.((..((((((......)))))).))...))	chr2:37240692-37240907(-)$1	1	142	176	12.8849
(((((((...(.((.....)).)...))).))))	chr6:29383488-29383708(+)$1	1	70	104	12.3428
(((((...((((((......))))))....)).)	chr7:30562325-30562541(+)$1	1	93	127	11.7649
(((....(((((.........)))))))))))))	chr6:71546696-71546914(-)$1	1	15	49	11.3925
....(((...((((......))))..)))...))	chr4:98403114-98403331(+)$1	1	42	76	15.8033
...(((.((((((((((...)))))))))).)))	chr1:24619252-24619471(+)$1	1	169	203	12.6056
((.(..(((..(((......))).))).))))))	chrX:108773314-108773532(-)$1	1	43	77	15.7353
(((((((.(((.........))).)))))))...	chr17:32190712-32190936(+)$1	1	100	134	9.8547

#PSSM
c : 0.11	= : 0.09	g : 0.09	: : 0.07	d : 0.07	! : 0.07	b : 0.07	[ : 0.07	i : 0.05	# : 0.05	" : 0.03	e : 0.03	f : 0.03	$ : 0.01	a : 0.01	( : 0.01	h : 0.01	
c : 0.15	g : 0.15	i : 0.07	= : 0.07	! : 0.07	e : 0.07	d : 0.07	b : 0.05	# : 0.05	[ : 0.05	" : 0.03	: : 0.03	f : 0.03	h : 0.01	
g : 0.19	i : 0.09	c : 0.09	b : 0.07	[ : 0.07	d : 0.07	= : 0.05	! : 0.05	e : 0.05	" : 0.03	# : 0.03	f : 0.03	h : 0.03	a : 0.03	$ : 0.01	
c : 0.19	g : 0.19	i : 0.09	# : 0.09	e : 0.07	! : 0.05	b : 0.05	= : 0.03	" : 0.03	d : 0.03	f : 0.03	h : 0.01	$ : 0.01	[ : 0.01	a : 0.01	
c : 0.21	g : 0.17	i : 0.09	! : 0.09	e : 0.07	[ : 0.07	b : 0.05	# : 0.05	" : 0.03	: : 0.01	d : 0.01	f : 0.01	h : 0.01	$ : 0.01	= : 0.01	
c : 0.23	g : 0.19	e : 0.09	i : 0.09	! : 0.07	b : 0.05	" : 0.05	[ : 0.05	# : 0.05	a : 0.01	h : 0.01	$ : 0.01	= : 0.01	
g : 0.17	c : 0.17	[ : 0.11	# : 0.09	i : 0.07	! : 0.07	b : 0.07	e : 0.05	d : 0.05	" : 0.03	a : 0.01	h : 0.01	$ : 0.01	
g : 0.19	e : 0.15	c : 0.13	! : 0.09	" : 0.09	[ : 0.07	i : 0.05	b : 0.05	d : 0.05	# : 0.03	h : 0.01	= : 0.01	
c : 0.15	e : 0.15	g : 0.13	d : 0.11	! : 0.09	" : 0.09	i : 0.05	# : 0.05	f : 0.03	b : 0.01	a : 0.01	[ : 0.01	h : 0.01	= : 0.01	
e : 0.17	d : 0.15	c : 0.13	" : 0.11	g : 0.09	! : 0.09	[ : 0.05	# : 0.05	i : 0.03	f : 0.03	h : 0.01	= : 0.01	
d : 0.30	e : 0.15	c : 0.11	g : 0.09	! : 0.09	" : 0.07	[ : 0.03	f : 0.03	i : 0.01	# : 0.01	a : 0.01	= : 0.01	
d : 0.30	c : 0.17	e : 0.15	[ : 0.07	g : 0.07	! : 0.05	" : 0.05	f : 0.03	# : 0.01	= : 0.01	r : 0.01	
d : 0.26	b : 0.17	c : 0.17	[ : 0.09	e : 0.05	g : 0.05	! : 0.03	f : 0.03	r : 0.03	" : 0.01	a : 0.01	= : 0.01	
d : 0.23	b : 0.19	c : 0.15	a : 0.09	g : 0.05	r : 0.05	o : 0.03	! : 0.03	e : 0.03	f : 0.03	p : 0.01	[ : 0.01	= : 0.01	
o : 0.69	c : 0.05	n : 0.05	a : 0.05	r : 0.05	b : 0.01	p : 0.01	d : 0.01	= : 0.01	
o : 0.75	n : 0.11	r : 0.05	c : 0.01	p : 0.01	d : 0.01	= : 0.01	
o : 0.75	n : 0.11	r : 0.05	c : 0.01	p : 0.01	l : 0.01	= : 0.01	
o : 0.75	n : 0.11	l : 0.05	r : 0.05	p : 0.01	
o : 0.75	n : 0.11	l : 0.05	r : 0.05	p : 0.01	
o : 0.71	n : 0.05	d : 0.05	r : 0.05	l : 0.03	a : 0.03	p : 0.01	b : 0.01	
c : 0.23	d : 0.23	b : 0.17	a : 0.09	o : 0.05	e : 0.05	g : 0.05	r : 0.03	f : 0.03	= : 0.01	
d : 0.24	c : 0.23	b : 0.17	] : 0.07	e : 0.07	g : 0.05	a : 0.03	f : 0.03	3 : 0.01	r : 0.01	= : 0.01	
d : 0.28	c : 0.23	2 : 0.09	g : 0.09	e : 0.09	3 : 0.05	f : 0.03	4 : 0.01	b : 0.01	] : 0.01	a : 0.01	= : 0.01	
d : 0.23	2 : 0.15	] : 0.15	3 : 0.15	e : 0.11	g : 0.09	4 : 0.03	f : 0.03	= : 0.01	
e : 0.17	3 : 0.15	2 : 0.13	g : 0.11	d : 0.09	c : 0.09	] : 0.05	4 : 0.03	b : 0.03	f : 0.03	i : 0.01	h : 0.01	= : 0.01	
c : 0.15	3 : 0.13	g : 0.11	e : 0.11	d : 0.09	b : 0.07	2 : 0.07	i : 0.05	4 : 0.03	] : 0.03	f : 0.03	a : 0.01	h : 0.01	= : 0.01	
c : 0.26	g : 0.15	] : 0.11	d : 0.09	e : 0.09	i : 0.05	4 : 0.03	b : 0.03	3 : 0.03	a : 0.03	= : 0.03	h : 0.01	
c : 0.19	g : 0.15	] : 0.11	e : 0.09	d : 0.09	3 : 0.09	i : 0.05	b : 0.03	2 : 0.03	= : 0.03	h : 0.01	5 : 0.01	a : 0.01	4 : 0.01	
g : 0.17	c : 0.17	e : 0.11	3 : 0.09	i : 0.07	2 : 0.07	b : 0.07	d : 0.05	4 : 0.03	= : 0.03	h : 0.01	] : 0.01	5 : 0.01	a : 0.01	
g : 0.15	3 : 0.15	c : 0.11	] : 0.11	i : 0.07	2 : 0.07	e : 0.05	b : 0.05	d : 0.03	4 : 0.03	= : 0.03	: : 0.01	f : 0.01	h : 0.01	5 : 0.01	
c : 0.19	g : 0.19	e : 0.09	] : 0.09	i : 0.07	3 : 0.07	= : 0.05	4 : 0.03	2 : 0.03	f : 0.03	b : 0.03	d : 0.01	h : 0.01	5 : 0.01	
c : 0.21	g : 0.19	e : 0.11	i : 0.07	3 : 0.05	h : 0.05	= : 0.05	4 : 0.03	d : 0.03	f : 0.03	2 : 0.01	] : 0.01	5 : 0.01	a : 0.01	b : 0.01	8 : 0.01	
c : 0.19	g : 0.19	i : 0.09	e : 0.09	d : 0.07	= : 0.07	2 : 0.05	] : 0.03	f : 0.03	b : 0.03	h : 0.03	4 : 0.01	a : 0.01	8 : 0.01	
g : 0.15	c : 0.13	2 : 0.11	d : 0.09	b : 0.07	i : 0.07	] : 0.07	= : 0.07	e : 0.05	f : 0.03	h : 0.03	4 : 0.01	: : 0.01	8 : 0.01	

#score	698.1754208532715
#seq	52
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_UTR_m1_run1.txt

#BEAR
ffff$$$$$ddddccclllccc333dddd4444ffff	chr7:134752764-134752974(-)$1	210	74	111	10.9508
bccc[dddd[ccc[annnnna]ccc]dddd]ccc]bb	chr19:47337709-47337920(-)$1	211	65	102	10.7589
ggggggbb"""cccooooooccc333bb4444ggggg	chr1:33777178-33777398(+)$1	220	177	214	14.0598
ffbb"""eeeee[cccmmmmccc]eeeee]bb]ffff	chr14:32321029-32321241(+)$1	212	134	171	11.6778
eeeeffffff[cccooooooccc22ffffff22eeee	chr6:122268551-122268766(-)$1	215	157	194	11.3296
[ccc!!bb[gggggggmmmmgggggggbb22ccc]ee	chr7:63217706-63217923(-)$1	217	14	51	12.2754
"""hhhhhhhh!!cccmmmmccc]hhhhhhhheeeee	chr7:91048274-91048489(+)$1	215	177	214	10.6573
[dddd[ccc[ffffffmmmmffffff]ccc333dddd	chr9:115999198-115999415(-)$1	217	139	176	11.4632
ccc!!ccc!!ccccccmmmmccc]ccc]cccccc]bb	chr12:82049403-82049622(+)$1	219	159	196	14.9498
b####ccc[gggggggmmmmggggggg]cccbb]hhh	chr1:74346403-74346617(-)$1	214	170	207	11.9381
""dddd[ddddacccnnnnnccc]a]dddd22dddd]	chr11:117715929-117716138(+)$1	209	35	72	10.9030
i####ccc"""ddddmmmmdddd]ccc333iiiiiii	chr14:27920306-27920524(+)$1	218	19	56	12.6978
========[affffffmmmmffffff]a22=======	chr10:59594730-59594944(+)$1	214	121	158	12.6762
eeeee!!ffffffcccmmmmccc4444ffffffeeee	chr2:51977051-51977263(+)$1	212	107	144	11.9948
ccceeeee!!acccooooooccc]a22eeeee22ccc	chr17:26063759-26063977(-)$1	218	77	114	12.7256
========[ffffffooooooffffff333=======	chr2:154519852-154520064(+)$1	212	32	69	12.8425
ddd!!a[iiiiiiiiimmmmiiiiiiiii]a4444dd	chr2:122572299-122572517(+)$1	218	59	96	13.6797
ffffff[ccc####bbmmmmbb4444cccffffffee	chrX:94530625-94530842(-)$1	217	87	124	10.7936
eeeee[eeeee!!ccclllccc333eeeee]eeeee:	chr4:81939403-81939617(-)$1	214	58	95	10.8922
dbb"""eeeee!!a[ammmma]a22eeeeebb]dddd	chr5:77342807-77343017(-)$1	210	153	190	11.3007
[==========bb[bbmmmmbbbb333==========	chr6:88453590-88453805(-)$1	215	56	93	12.9997
iiiiiieeeee[ddddmmmmdddd333eeeee22iii	chr14:58143586-58143797(-)$1	211	156	193	11.3841
dd[a[ccc"""cccooooooccc22cccadddddddd	chr9:109984785-109985001(+)$1	216	34	71	13.6023
eeggggggg####cccmmmmccc4444ggggggg:::	chr10:62273500-62273717(-)$1	217	122	159	11.9092
!!cccccc[dddd!!ammmma22dddd]ccc]cccdd	chr4:123216950-123217164(-)$1	214	66	103	11.0530
bb============oooooo============4444b	chr16:23110235-23110452(+)$1	217	70	107	13.8767
d!!eeeee[a[cccooooooccc]aeeeee22dddd5	chr19:42022602-42022811(-)$1	209	123	160	11.8931
ccc[dddd"""cccooooooccc4444dddd]ccc44	chr5:23010864-23011082(-)$1	218	137	174	13.8863
dddd!!ccc####cccmmmmccc333ccc22dddd:c	chr2:118706285-118706496(+)$1	211	45	82	13.3176
dd[ccc[bb!!cccooooooccc4444bb]cccdddd	chr17:28536648-28536863(-)$1	215	176	213	13.0633
f!!ggggggg[a[cccmmmmcccaggggggg22ffff	chr2:37428509-37428721(-)$1	212	126	163	13.5659
iiiiiii"""ggggggglllggggggg333iiiiiii	chr10:57236855-57237073(-)$1	218	161	198	13.3198
cccggggggg!!cccnnnnnccc22ggggggg]ccc2	chr18:63851713-63851932(-)$1	219	81	118	13.6399
iiiiiiii####cccnnnnnccc22iiiiiiiii]dd	chr1:43131677-43131890(-)$1	213	22	59	14.5312
ccc[=============nnnnn=============cc	chr12:81980508-81980725(+)$1	217	124	161	12.7426
[ccc[bb!!gggggggnnnnngggggggbb]ccc]cc	chr7:150253367-150253589(+)$1	222	143	180	11.1039
$$$$$ffffff[cccnnnnnccc333ffffff4444e	chr13:13603740-13603959(+)$1	219	94	131	11.7557
f####ggggggg[ccclllcccggggggg]ffffff:	chr17:56702614-56702828(-)$1	214	142	179	11.9629
lccc==========ccclllccc]==========:ee	chr3:35653061-35653281(+)$1	220	27	64	13.5155
ddd[dddd"""cccooooooccc333dddd]dddd22	chr11:57931370-57931585(+)$1	215	7	44	12.9127
ddd!!ggggggg[cccooooooccc22ggggggg]dd	chr13:63383383-63383603(+)$1	220	65	102	12.6619
ff"""ccc[a[ddddmmmmddddaccc]ffffff]dd	chr11:68936909-68937140(-)$1	231	123	160	10.9335
dd[ccc[ccc"""bbnnnnnbb22ccc]ccc]dddd]	chr12:82049278-82049509(+)$1	231	84	121	10.9355
iiiiiiii[bb[cccnnnnnccc]bb]iiiiiiiii]	chr8:24347985-24348203(-)$1	218	159	196	13.0217
ccc!!dddd"""cccmmmmccc]dddd22ccceeeee	chr19:41635318-41635531(+)$1	213	156	193	11.4338
dddd[cccggggggglllggggggg333ccc]dddd4	chr3:65358151-65358362(+)$1	211	6	43	11.0506
fff####ddddbbcccmmmmccc]bb]dddd333fff	chr1:89134707-89134922(+)$1	215	75	112	11.6338
ccc[dddd!!ccc[ccclllccc22ccc22ddddccc	chr17:24211910-24212129(-)$1	219	78	115	12.5977
ffff[ccc!!ffffffmmmmffffff4444ccc22ff	chr17:32421368-32421578(-)$1	210	110	147	11.4595
$$a[==========ccclllccc]==========]a3	chr2:121259307-121259525(+)$1	218	131	168	14.8246
ggggggg"""a[ddddmmmmdddd]a]ggggggg]bb	chr14:103480712-103480929(-)$1	217	113	150	12.2115
cc!!cccccc!!ddddmmmmddddccc]ccc22ccc4	chr6:39348445-39348663(-)$1	218	87	124	12.2181
:ggggggg!!ggggggglllggggggg4444gggggg	chr7:127876049-127876265(+)$1	216	156	193	11.7158
ccc!!bb####fffffflllffffff4444bb]cccd	chrX:35905493-35905711(-)$1	218	100	137	11.1211
cccddddeeeee[cccmmmmccc]eeeee>>>>>>>>	chr6:128358337-128358561(-)$1	224	47	84	10.7114
[bb$$$$$eeeeecccmmmmccc4444eeeee333bb	chr19:60866363-60866581(-)$1	218	93	130	11.8917
cc:ccc[iiiiiiiiimmmmiiiiiiiii]cccFFFF	chr17:28884493-28884711(+)$1	218	90	127	10.6482

#otherMatches

#Seq PSSM
GGAAGGAGGACUGGGGGUCCCUUAUCAGUAAAGUUCC	chr7:134752764-134752974(-)$1	210	74	111	10.9508
CCAAGAGGGAUUUGGGACAGUGGAGACCCUGUUGAGU	chr19:47337709-47337920(-)$1	211	65	102	10.7589
CCUUUGCCUACGCGAGAGUCUGCAUUGGUUGCCAAGG	chr1:33777178-33777398(+)$1	220	177	214	14.0598
ACCUACACGUCUCAGCACAAGCUCAGAUGCAGAGUGU	chr14:32321029-32321241(+)$1	212	134	171	11.6778
UUAUUACUUAAAGAAGAACAUCUGAUGAGUGCCAUGA	chr6:122268551-122268766(-)$1	215	157	194	11.3296
GGGCGAAGAGCCUUGCGGAGGCGGGGCCUGAGCUGUG	chr7:63217706-63217923(-)$1	217	14	51	12.2754
GUCAGUCUCUCGGGUUUACAGGCAGAGAGGCUUGAAG	chr7:91048274-91048489(+)$1	215	177	214	10.6573
UGGAGACUGUCAUGGCAUAAGCUGUGCUAGCACCUCC	chr9:115999198-115999415(-)$1	217	139	176	11.4632
GAAGAGCCAGUCGGGCCUAUGUCAUGAAGGUUUCUCC	chr12:82049403-82049622(+)$1	219	159	196	14.9498
GGCCCUCUGUUUCUGUGGAUACAGAGAGAGACACUCU	chr1:74346403-74346617(-)$1	214	170	207	11.9381
aaGACUAACCCGGGCUUGGUGCCACAGGGUACAGUCC	chr11:117715929-117716138(+)$1	209	35	72	10.9030
AUUUUUACAUUGGCGAUAUUGCUGGUAUAUUGUGGUA	chr14:27920306-27920524(+)$1	218	19	56	12.6978
gggcugcacgugguuaagcauagcugucucuguggcc	chr10:59594730-59594944(+)$1	214	121	158	12.6762
AUUUCCUGAAGAUUACAGCUGUAGAAAAUCUUUGAAA	chr2:51977051-51977263(+)$1	212	107	144	11.9948
GUACUUCAUUGGGCUUACUUGCUACUCUGGAGAUUGC	chr17:26063759-26063977(-)$1	218	77	114	12.7256
CUCACUCUCGCAUAGCAUGGUCUGUGCCCAGGGGUGG	chr2:154519852-154520064(+)$1	212	32	69	12.8425
GGACAUGAGGAGCCUGCCUUCGGGUUCCUGGCCCAUC	chr2:122572299-122572517(+)$1	218	59	96	13.6797
CACAGCAUUUUUCAAGUUAGCUAAGUGAGGCUGUGAA	chrX:94530625-94530842(-)$1	217	87	124	10.7936
ACUGUCAAGUGUAUGCAUAGCAGAUCAUUUAAUAGUG	chr4:81939403-81939617(-)$1	214	58	95	10.8922
GCUGCAGUGCCUGAGGUUAUCGUAUGGCAUAGACACA	chr5:77342807-77343017(-)$1	210	153	190	11.3007
AGCUGUCAGCUGGACCUGGUGGCUUGUGGUUGAUGGU	chr6:88453590-88453805(-)$1	215	56	93	12.9997
UGGGUGUCGCCCCUACAGAAGUGGACUGGCGGUCCGC	chr14:58143586-58143797(-)$1	211	156	193	11.3841
CACGUGGAGACCAGCACCGACUGAAUCCCUGGAACCU	chr9:109984785-109985001(+)$1	216	34	71	13.6023
GCCUUAGAGUUCUGUUUAUAAACCUUUUUUUAAGUUU	chr10:62273500-62273717(-)$1	217	122	159	11.9092
AUGCGUUUCCACAGGCUGCAGAAUGUGCAGAUCGCCC	chr4:123216950-123217164(-)$1	214	66	103	11.0530
GCUCCAAAAUGGAUCAAAAUGUUCGUUUUGGACGAAG	chr16:23110235-23110452(+)$1	217	70	107	13.8767
AUGUUGGCUAGACUCAGAUAAGUGUGUCAGAUUUUAA	chr19:42022602-42022811(-)$1	209	123	160	11.8931
AAAGAAGUCUACUCUUUAACGAGAUCUGCUUGUUUGU	chr5:23010864-23011082(-)$1	218	137	174	13.8863
GGCCCAUCGCCCCCUGGUCCCAGCACCGAGAGGCCUU	chr2:118706285-118706496(+)$1	211	45	82	13.3176
GGACAGCGCUUCUGAGGCUCCAGUUCUGCUCUGCUCG	chr17:28536648-28536863(-)$1	215	176	213	13.0633
UCAGUUUUUGAGCAGUGAGAACUCCAGGGACAUACAG	chr2:37428509-37428721(-)$1	212	126	163	13.5659
ACAGUAUUCCCAAUUUUUGUAAAGUUGUAUGUGCUGU	chr10:57236855-57237073(-)$1	218	161	198	13.3198
CGCCCUGCCGGGCUCUCUGUGAGGAUGGUGGGAGUGA	chr18:63851713-63851932(-)$1	219	81	118	13.6399
CACGUGCCUUCGCUGUGGCCCAGAUGGCAUGUGACAU	chr1:43131677-43131890(-)$1	213	22	59	14.5312
CAGCACCAAAGGACUUUUACACAGGGUUUUUUGGUUU	chr12:81980508-81980725(+)$1	217	124	161	12.7426
GGUGGAGCUGGCCCUGGCUUGCAGGGCCCUGUACGUC	chr7:150253367-150253589(+)$1	222	143	180	11.1039
AAUAAUUUUGGAUUGGAAGUCAAGCAUCAGAAGUUCG	chr13:13603740-13603959(+)$1	219	94	131	11.7557
ACUAUCUGCCUUUGUUCUAGGCAAGGCAGCUUUGCAC	chr17:56702614-56702828(-)$1	214	142	179	11.9629
GCGCCGGGCGCGGUUGGCAGCCAGGCCGCGCCUGUAG	chr3:35653061-35653281(+)$1	220	27	64	13.5155
UGCUGCUCUGAUGAAGUUGCUCAGAUGAGCUGUGGCU	chr11:57931370-57931585(+)$1	215	7	44	12.9127
GCUUUCUCCAGACCAGAUCGUCUUGCUUUUGGAGUGG	chr13:63383383-63383603(+)$1	220	65	102	12.6619
ucaaagguuguggguucgaaucccaccagagucgGUU	chr11:68936909-68937140(-)$1	231	123	160	10.9335
ACGCUUCCGAAUAAGAGGUCCUGGUCGAAAGAGUUGA	chr12:82049278-82049509(+)$1	231	84	121	10.9355
GCUCGGGGAGCCUCAGUCCGUGGUGUCCCCCGAGCGU	chr8:24347985-24348203(-)$1	218	159	196	13.0217
AGUCCUCAGGCACAGAUUCCUGACUGAAAACUUUGAA	chr19:41635318-41635531(+)$1	213	156	193	11.4338
CUGAUUGUUACGUGUGAUACAUGUGUUAACAUUCAGC	chr3:65358151-65358362(+)$1	211	6	43	11.0506
CUUGAUGACCGACCAUAUGUAUGUGUCCGGUGCUGGG	chr1:89134707-89134922(+)$1	215	75	112	11.6338
UGUUCUUGCUCCACACCUCAGGUCUUGGUUCAGGACA	chr17:24211910-24212129(-)$1	219	78	115	12.5977
UCUCAGGUGAGGGGACCGGUGUCCUUcgcggccgcga	chr17:32421368-32421578(-)$1	210	110	147	11.4595
AGUGCUGCUCAGUGCUGGCUCAGCCAUUGGGUGGGGA	chr2:121259307-121259525(+)$1	218	131	168	14.8246
UGCUAACAGAUGUCUCUCCUGAGAGAAGUUAGUAGUG	chr14:103480712-103480929(-)$1	217	113	150	12.2115
CUAACUCCCAAGGGUCGAUGGACUUGGUGGGCGAGCA	chr6:39348445-39348663(-)$1	218	87	124	12.2181
CAUUAUACCACUGAUACAAAGUAUUAGCAAAGUAUAG	chr7:127876049-127876265(+)$1	216	156	193	11.7158
CUGAGGCAGAUAUGUGAAGAUCACAUCAAAGCACAGA	chrX:35905493-35905711(-)$1	218	100	137	11.1211
CACCCCCACCCAGCUGUAAGCAGAUGGGUACAGGAUU	chr6:128358337-128358561(-)$1	224	47	84	10.7114
CGCCUUCUCUCCCGGUCCAGGCCACUAGGGAGUUCGC	chr19:60866363-60866581(-)$1	218	93	130	11.8917
CGGCAGCUUGACACUGAAUCCAGUGUCAAUUUGGGGA	chr17:28884493-28884711(+)$1	218	90	127	10.6482

#DB
((((.....(((((((...)))...))))....))))	chr7:134752764-134752974(-)$1	1	74	111	10.9508
((((.((((.(((.(.....).))).)))).))).))	chr19:47337709-47337920(-)$1	1	65	102	10.7589
((((((((...(((......)))...))....)))))	chr1:33777178-33777398(+)$1	1	177	214	14.0598
((((...(((((.(((....))).))))).)).))))	chr14:32321029-32321241(+)$1	1	134	171	11.6778
((((((((((.(((......)))..))))))..))))	chr6:122268551-122268766(-)$1	1	157	194	11.3296
.(((..((.(((((((....)))))))))..))).))	chr7:63217706-63217923(-)$1	1	14	51	12.2754
...((((((((..(((....))).)))))))))))))	chr7:91048274-91048489(+)$1	1	177	214	10.6573
.((((.(((.((((((....)))))).)))...))))	chr9:115999198-115999415(-)$1	1	139	176	11.4632
(((..(((..((((((....))).))).)))))).))	chr12:82049403-82049622(+)$1	1	159	196	14.9498
(....(((.(((((((....))))))).))))).)))	chr1:74346403-74346617(-)$1	1	170	207	11.9381
..((((.((((((((.....))).).))))..)))).	chr11:117715929-117716138(+)$1	1	35	72	10.9030
(....(((...((((....)))).)))...)))))))	chr14:27920306-27920524(+)$1	1	19	56	12.6978
((((((((.(((((((....)))))).)..)))))))	chr10:59594730-59594944(+)$1	1	121	158	12.6762
(((((..(((((((((....)))....))))))))))	chr2:51977051-51977263(+)$1	1	107	144	11.9948
((((((((..((((......))).)..)))))..)))	chr17:26063759-26063977(-)$1	1	77	114	12.7256
((((((((.((((((......))))))...)))))))	chr2:154519852-154520064(+)$1	1	32	69	12.8425
(((..(.(((((((((....))))))))).)....))	chr2:122572299-122572517(+)$1	1	59	96	13.6797
((((((.(((....((....))....)))))))))((	chrX:94530625-94530842(-)$1	1	87	124	10.7936
(((((.(((((..(((...)))...))))).))))).	chr4:81939403-81939617(-)$1	1	58	95	10.8922
(((...(((((..(.(....).)..))))))).))))	chr5:77342807-77343017(-)$1	1	153	190	11.3007
.((((((((((((.((....))))...))))))))))	chr6:88453590-88453805(-)$1	1	56	93	12.9997
(((((((((((.((((....))))...)))))..)))	chr14:58143586-58143797(-)$1	1	156	193	11.3841
((.(.(((...(((......)))..))))))))))))	chr9:109984785-109985001(+)$1	1	34	71	13.6023
))(((((((....(((....)))....)))))))...	chr10:62273500-62273717(-)$1	1	122	159	11.9092
..((((((.((((..(....)..)))).))).)))))	chr4:123216950-123217164(-)$1	1	66	103	11.0530
((((((((((((((......))))))))))))....)	chr16:23110235-23110452(+)$1	1	70	107	13.8767
(..(((((.(.(((......))).))))))..)))).	chr19:42022602-42022811(-)$1	1	123	160	11.8931
(((.((((...(((......)))....)))).)))..	chr5:23010864-23011082(-)$1	1	137	174	13.8863
((((..(((....(((....)))...)))..)))).(	chr2:118706285-118706496(+)$1	1	45	82	13.3176
((.(((.((..(((......)))....)).)))))))	chr17:28536648-28536863(-)$1	1	176	213	13.0633
(..(((((((.(.(((....)))))))))))..))))	chr2:37428509-37428721(-)$1	1	126	163	13.5659
(((((((...(((((((...)))))))...)))))))	chr10:57236855-57237073(-)$1	1	161	198	13.3198
((((((((((..(((.....)))..))))))).))).	chr18:63851713-63851932(-)$1	1	81	118	13.6399
((((((((....(((.....)))..))))))))).))	chr1:43131677-43131890(-)$1	1	22	59	14.5312
(((.(((((((((((((.....)))))))))))))))	chr12:81980508-81980725(+)$1	1	124	161	12.7426
.(((.((..(((((((.....))))))))).))).))	chr7:150253367-150253589(+)$1	1	143	180	11.1039
.....((((((.(((.....)))...))))))....)	chr13:13603740-13603959(+)$1	1	94	131	11.7557
(....(((((((.(((...)))))))))).)))))).	chr17:56702614-56702828(-)$1	1	142	179	11.9629
.)))(((((((((((((...))).)))))))))).((	chr3:35653061-35653281(+)$1	1	27	64	13.5155
(((.((((...(((......)))...)))).))))..	chr11:57931370-57931585(+)$1	1	7	44	12.9127
(((..(((((((.(((......)))..))))))).))	chr13:63383383-63383603(+)$1	1	65	102	12.6619
((...(((.(.((((....)))))))).)))))).))	chr11:68936909-68937140(-)$1	1	123	160	10.9335
((.(((.(((...((.....))..))).))).)))).	chr12:82049278-82049509(+)$1	1	84	121	10.9355
((((((((.((.(((.....))).)).))))))))).	chr8:24347985-24348203(-)$1	1	159	196	13.0217
(((..((((...(((....))).))))..)))(((((	chr19:41635318-41635531(+)$1	1	156	193	11.4338
((((.((((((((((...)))))))...))).)))).	chr3:65358151-65358362(+)$1	1	6	43	11.0506
(((....(((((((((....))).)).))))...)))	chr1:89134707-89134922(+)$1	1	75	112	11.6338
(((.((((..(((.(((...)))..)))..)))))))	chr17:24211910-24212129(-)$1	1	78	115	12.5977
((((.(((..((((((....))))))....)))..))	chr17:32421368-32421578(-)$1	1	110	147	11.4595
..(.(((((((((((((...))).)))))))))).).	chr2:121259307-121259525(+)$1	1	131	168	14.8246
(((((((...(.((((....)))).).))))))).))	chr14:103480712-103480929(-)$1	1	113	150	12.2115
((..((((((..((((....))))))).)))..))).	chr6:39348445-39348663(-)$1	1	87	124	12.2181
.(((((((..(((((((...)))))))....))))))	chr7:127876049-127876265(+)$1	1	156	193	11.7158
(((..((....((((((...))))))....)).)))(	chrX:35905493-35905711(-)$1	1	100	137	11.1211
((((((((((((.(((....))).)))))........	chr6:128358337-128358561(-)$1	1	47	84	10.7114
.((.....((((((((....)))....)))))...))	chr19:60866363-60866581(-)$1	1	93	130	11.8917
)).(((.(((((((((....))))))))).)))))))	chr17:28884493-28884711(+)$1	1	90	127	10.6482

#PSSM
c : 0.19	d : 0.17	f : 0.14	[ : 0.08	i : 0.08	e : 0.07	b : 0.05	g : 0.03	" : 0.03	= : 0.03	$ : 0.03	! : 0.01	l : 0.01	: : 0.01	
c : 0.26	d : 0.15	f : 0.10	e : 0.07	i : 0.07	g : 0.05	# : 0.05	= : 0.05	b : 0.05	! : 0.05	" : 0.03	$ : 0.03	
c : 0.24	d : 0.12	f : 0.07	g : 0.07	= : 0.07	i : 0.07	b : 0.05	e : 0.05	# : 0.05	[ : 0.05	! : 0.05	" : 0.03	$ : 0.01	a : 0.01	: : 0.01	
c : 0.14	g : 0.10	! : 0.10	e : 0.08	d : 0.08	[ : 0.08	# : 0.07	= : 0.07	i : 0.07	f : 0.05	" : 0.03	$ : 0.03	b : 0.01	h : 0.01	a : 0.01	
! : 0.12	= : 0.12	g : 0.10	d : 0.10	[ : 0.08	c : 0.08	# : 0.07	e : 0.07	i : 0.07	$ : 0.05	" : 0.05	f : 0.03	h : 0.01	
c : 0.21	g : 0.14	d : 0.12	= : 0.12	i : 0.07	f : 0.05	! : 0.05	$ : 0.03	" : 0.03	[ : 0.03	e : 0.03	b : 0.03	h : 0.01	a : 0.01	# : 0.01	
c : 0.19	= : 0.12	g : 0.12	d : 0.10	[ : 0.10	e : 0.08	b : 0.07	i : 0.05	$ : 0.03	f : 0.03	" : 0.01	h : 0.01	! : 0.01	# : 0.01	
c : 0.22	d : 0.12	e : 0.12	= : 0.12	g : 0.10	i : 0.07	b : 0.05	f : 0.05	$ : 0.03	" : 0.03	h : 0.01	! : 0.01	# : 0.01	
[ : 0.14	" : 0.12	e : 0.10	! : 0.10	g : 0.10	c : 0.08	= : 0.08	d : 0.07	f : 0.05	i : 0.03	# : 0.03	$ : 0.01	h : 0.01	b : 0.01	
" : 0.14	g : 0.14	e : 0.10	! : 0.10	= : 0.08	d : 0.07	f : 0.07	# : 0.07	a : 0.05	c : 0.05	[ : 0.03	i : 0.03	h : 0.01	b : 0.01	
g : 0.14	" : 0.12	e : 0.10	f : 0.10	# : 0.08	= : 0.08	d : 0.07	[ : 0.07	c : 0.05	! : 0.05	a : 0.03	i : 0.03	h : 0.01	b : 0.01	
c : 0.19	g : 0.14	f : 0.10	! : 0.08	d : 0.07	# : 0.07	[ : 0.07	= : 0.07	e : 0.05	a : 0.03	i : 0.03	b : 0.03	" : 0.03	
c : 0.29	d : 0.12	g : 0.10	f : 0.10	[ : 0.08	= : 0.07	! : 0.05	# : 0.05	i : 0.03	b : 0.03	" : 0.01	e : 0.01	
c : 0.49	g : 0.10	f : 0.08	d : 0.08	= : 0.07	[ : 0.05	i : 0.03	# : 0.01	a : 0.01	! : 0.01	b : 0.01	
c : 0.40	o : 0.15	g : 0.10	f : 0.08	d : 0.08	b : 0.05	i : 0.03	a : 0.01	[ : 0.01	! : 0.01	= : 0.01	
c : 0.29	o : 0.17	n : 0.12	g : 0.08	f : 0.07	m : 0.05	d : 0.05	i : 0.03	b : 0.03	a : 0.03	= : 0.01	l : 0.01	
m : 0.47	o : 0.19	n : 0.14	l : 0.07	c : 0.05	g : 0.03	= : 0.01	f : 0.01	
m : 0.47	o : 0.19	l : 0.17	n : 0.15	
m : 0.47	o : 0.19	l : 0.15	n : 0.15	g : 0.01	
m : 0.42	o : 0.19	n : 0.15	l : 0.10	c : 0.07	d : 0.03	g : 0.01	
c : 0.52	g : 0.08	d : 0.08	f : 0.07	a : 0.05	b : 0.05	o : 0.03	i : 0.03	n : 0.03	= : 0.01	
c : 0.52	g : 0.10	f : 0.08	d : 0.08	b : 0.05	] : 0.03	i : 0.03	2 : 0.01	= : 0.01	n : 0.01	o : 0.01	
c : 0.49	g : 0.12	f : 0.08	d : 0.08	3 : 0.03	i : 0.03	2 : 0.03	= : 0.03	4 : 0.01	a : 0.01	b : 0.01	] : 0.01	
] : 0.21	2 : 0.12	g : 0.12	3 : 0.10	4 : 0.10	f : 0.08	d : 0.08	c : 0.03	i : 0.03	= : 0.03	a : 0.03	b : 0.01	
3 : 0.14	g : 0.14	c : 0.12	2 : 0.10	4 : 0.10	f : 0.08	= : 0.07	a : 0.05	e : 0.03	i : 0.03	d : 0.03	b : 0.03	h : 0.01	] : 0.01	
g : 0.14	3 : 0.12	c : 0.12	f : 0.10	4 : 0.10	e : 0.08	= : 0.07	d : 0.05	i : 0.05	] : 0.03	2 : 0.03	b : 0.03	h : 0.01	a : 0.01	
c : 0.15	g : 0.14	4 : 0.12	d : 0.10	e : 0.08	] : 0.08	= : 0.07	f : 0.05	i : 0.05	3 : 0.05	2 : 0.03	b : 0.01	h : 0.01	
e : 0.14	g : 0.12	d : 0.10	] : 0.10	c : 0.08	= : 0.08	3 : 0.07	i : 0.07	b : 0.05	f : 0.05	4 : 0.05	h : 0.01	a : 0.01	2 : 0.01	
c : 0.15	e : 0.14	d : 0.10	g : 0.10	= : 0.08	4 : 0.07	f : 0.07	i : 0.07	b : 0.05	3 : 0.05	2 : 0.05	h : 0.01	a : 0.01	
c : 0.14	d : 0.10	e : 0.10	4 : 0.08	] : 0.08	f : 0.08	= : 0.08	g : 0.08	2 : 0.07	3 : 0.05	i : 0.03	h : 0.01	b : 0.01	> : 0.01	
c : 0.17	= : 0.12	f : 0.10	g : 0.08	] : 0.07	2 : 0.07	i : 0.07	d : 0.07	4 : 0.05	b : 0.05	e : 0.05	h : 0.01	3 : 0.01	a : 0.01	> : 0.01	
c : 0.14	= : 0.12	2 : 0.08	f : 0.08	g : 0.08	b : 0.07	i : 0.07	e : 0.07	d : 0.07	] : 0.07	4 : 0.05	3 : 0.03	h : 0.01	> : 0.01	
c : 0.15	d : 0.14	= : 0.10	g : 0.08	2 : 0.08	4 : 0.07	] : 0.07	i : 0.07	f : 0.07	e : 0.05	3 : 0.05	b : 0.01	> : 0.01	
d : 0.19	c : 0.15	f : 0.10	= : 0.10	g : 0.08	e : 0.08	i : 0.07	2 : 0.05	4 : 0.05	3 : 0.03	] : 0.01	> : 0.01	F : 0.01	
d : 0.17	] : 0.15	c : 0.12	f : 0.10	e : 0.08	i : 0.07	= : 0.07	4 : 0.05	g : 0.03	: : 0.03	h : 0.01	2 : 0.01	> : 0.01	3 : 0.01	F : 0.01	
d : 0.22	e : 0.14	c : 0.12	f : 0.10	b : 0.07	i : 0.07	= : 0.05	4 : 0.05	g : 0.03	: : 0.03	h : 0.01	2 : 0.01	a : 0.01	> : 0.01	F : 0.01	
d : 0.17	e : 0.14	f : 0.08	b : 0.08	c : 0.08	] : 0.05	i : 0.05	= : 0.05	: : 0.05	4 : 0.05	g : 0.03	2 : 0.03	h : 0.01	5 : 0.01	3 : 0.01	> : 0.01	F : 0.01	

#score	697.6755524739872
#seq	57
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_UTR_m1_run1.txt

#BEAR
g[cccuuuuuuuuuuuuccc]ggggg	chr19:41289138-41289386(-)$1	248	207	233	23.4218
fffffftttttttttttffffff:::	chr1:132615937-132616160(+)$1	223	123	149	20.2767
ggggggtttttttttttggggggg::	chrX:12869384-12869611(+)$1	227	129	155	22.2397
b[cccvvvvvvvvvvvvvccc]bb55	chr5:147104129-147104368(+)$1	239	110	136	21.3823
eeeeeuuuuuuuuuuuueeeeeccc3	chr1:180259109-180259343(-)$1	234	131	157	22.7047
ddddddtttttttttttdddd]dddd	chr7:104834683-104834914(+)$1	231	160	186	22.6272
%eeeeeuuuuuuuuuuuueeeee555	chr9:88348937-88349172(-)$1	235	132	158	20.1270
=====yyyyyyyyyyyyyyyy=====	chr11:96178399-96178623(+)$1	224	118	144	20.2986
ggggggvvvvvvvvvvvvvggggggg	chr6:72382798-72383024(-)$1	226	64	90	23.2985
gggggguuuuuuuuuuuuggggggg:	chr16:23965510-23965764(-)$1	254	58	84	22.9320
d"""bbvvvvvvvvvvvvvbb22ddd	chr10:62480738-62481001(-)$1	263	121	147	21.1428
g[bbyyyyyyyyyyyyyyyybbgggg	chr15:102263086-102263309(+)$1	223	118	144	19.4691
iiiiiuuuuuuuuuuuuiiiiiiiii	chr11:31832210-31832435(+)$1	225	9	35	22.8237
!!ddddvvvvvvvvvvvvvdddd22c	chrX:39629424-39629660(+)$1	236	135	161	22.4280
[eeeeevvvvvvvvvvvvveeeee]c	chr2:37229727-37229971(-)$1	244	185	211	22.9967
hhhhvvvvvvvvvvvvvhhhhhhhhF	chr2:131879228-131879454(-)$1	226	167	193	20.2367
::ddddtttttttttttdddddddd[	chr5:108931770-108931998(+)$1	228	136	162	20.4231
ffffffuuuuuuuuuuuuffffff::	chr2:168043134-168043372(-)$1	238	170	196	20.9803
ffbbwwwwwwwwwwwwwwbb]fffff	chr13:34993398-34993627(+)$1	229	50	76	19.8985
"eeeeettttttttttteeeee5555	chr11:115883863-115884089(-)$1	226	124	150	20.0929
f[cccuuuuuuuuuuuuccc]fffff	chr2:6463366-6463597(-)$1	231	72	98	22.6115
[eeeeettttttttttteeeeedddd	chr14:35560229-35560460(+)$1	231	62	88	23.0323
e[ddddtttttttttttddddeeeee	chr3:88883079-88883306(+)$1	227	40	66	23.1676
gg[ccctttttttttttcccgggggg	chr9:82826468-82826694(-)$1	226	35	61	23.9234
deeeeewwwwwwwwwwwwwweeeee2	chr9:69867156-69867386(+)$1	230	62	88	20.8304
ggggggvvvvvvvvvvvvvggggggg	chr15:38419841-38420094(-)$1	253	44	70	23.2985
d!!cccuuuuuuuuuuuuccc22ddd	chr8:41578059-41578297(-)$1	238	187	213	22.8598
ggggggtttttttttttgggggggdd	chr1:63098929-63099187(-)$1	258	73	99	23.4148
gggggguuuuuuuuuuuuggggggg4	chr8:24052548-24052786(+)$1	238	56	82	23.4890
======vvvvvvvvvvvvv=======	chr5:100465401-100465659(-)$1	258	27	53	23.2068
ceeeeettttttttttteeeee:EEE	chr2:153594141-153594366(+)$1	225	51	77	19.6608
b[dddduuuuuuuuuuuuddddbb22	chr11:79845275-79845530(+)$1	255	14	40	21.9583
hhhhvvvvvvvvvvvvvhhhhhhhh:	chr10:117252138-117252363(-)$1	225	185	211	19.9617
iiiiiiwwwwwwwwwwwwwwiiiiii	chr9:64564608-64564839(-)$1	231	21	47	21.3005
d[ddddtttttttttttdddd]dddd	chr4:123027679-123027907(-)$1	228	188	214	23.0524
e!!cccuuuuuuuuuuuuccceeeee	chr12:86266575-86266806(-)$1	231	14	40	23.2169
ffffffuuuuuuuuuuuuffffff:D	chr7:97356843-97357073(+)$1	230	142	168	20.8770
fffffftttttttttttffffff:::	chr3:60430835-60431063(+)$1	228	138	164	20.2767
a[ddddtttttttttttdddd]a22a	chr11:77523192-77523458(+)$1	266	29	55	22.9787
d"""bbtttttttttttbb333dddd	chr11:86313209-86313440(-)$1	231	188	214	21.7172
:dddduuuuuuuuuuuuddddGGGGG	chr10:74814958-74815189(+)$1	231	49	75	19.1054
hhhhvvvvvvvvvvvvvhhhhhhhh:	chr10:117251984-117252209(-)$1	225	31	57	19.9617
eeeeeuuuuuuuuuuuueeeee:GGG	chr15:81481626-81481851(+)$1	225	194	220	20.4619
dddwwwwwwwwwwwwwwddddggggg	chr10:79325993-79326220(+)$1	227	50	76	20.4742
eeeevvvvvvvvvvvvveeeeedddd	chr3:60431202-60431458(+)$1	256	63	89	22.0753
!!ddddtttttttttttdddd22ccc	chr18:35063588-35063819(-)$1	231	185	211	23.1159
ee[bbuuuuuuuuuuuubb]eeeee:	chr16:50196585-50196814(-)$1	229	201	227	21.2675
ffffffvvvvvvvvvvvvvffffffb	chr18:42500887-42501116(+)$1	229	122	148	21.8721
eeeccctttttttttttccc]eeeee	chr12:8712656-8712931(+)$1	275	222	248	23.3061
fffffftttttttttttffffffccc	chr2:153055087-153055320(-)$1	233	44	70	22.4543
""ddddtttttttttttdddd22ddd	chr11:51935419-51935659(+)$1	240	88	114	22.6927
eee[bbtttttttttttbb]eeeeec	chr11:87428726-87428978(+)$1	252	15	41	22.3849
=[dddduuuuuuuuuuuudddd22==	chr3:16113919-16114152(+)$1	233	143	169	22.7429
ggggggvvvvvvvvvvvvvggggggg	chr11:31833535-31833761(+)$1	226	143	169	23.2985

#otherMatches

#Seq PSSM
AAAUCUUCCUGGCACUUGGUGUUUCU	chr19:41289138-41289386(-)$1	248	207	233	23.4218
CUAUUCAUAACCCUACAGAAUAGAAC	chr1:132615937-132616160(+)$1	223	123	149	20.2767
UGCCAUAAAAAAUUGAAAUGGUAGAA	chrX:12869384-12869611(+)$1	227	129	155	22.2397
GUCAGAACCAAUAUUUCACUGUCGAC	chr5:147104129-147104368(+)$1	239	110	136	21.3823
UGUGACUUUUUUUUUUAUCACAACAA	chr1:180259109-180259343(-)$1	234	131	157	22.7047
AUCUGUGAGGGCCCAAAACAGAAUUU	chr7:104834683-104834914(+)$1	231	160	186	22.6272
GUAAGGAAAAUCAAGCAACCUUAAAU	chr9:88348937-88349172(-)$1	235	132	158	20.1270
UUGUGUAAGGAAUUUUGUGGUCACAA	chr11:96178399-96178623(+)$1	224	118	144	20.2986
GCUGGUGUGGUACAGAGAAGCCAGCU	chr6:72382798-72383024(-)$1	226	64	90	23.2985
auauauaaACCUAAAAAGAUAUAUUG	chr16:23965510-23965764(-)$1	254	58	84	22.9320
UAGACCAAUAGGAGGAAGAGGGGGUU	chr10:62480738-62481001(-)$1	263	121	147	21.1428
UUCUGUUAGCCAAUAUUUAAAGAGAC	chr15:102263086-102263309(+)$1	223	118	144	19.4691
UCUUAAAAUUCCGAAUGUAAGAAUUG	chr11:31832210-31832435(+)$1	225	9	35	22.8237
GAUACUUCUAACAGGUUACAGUACAU	chrX:39629424-39629660(+)$1	236	135	161	22.4280
GCGUUUGCACUGACUAACAAGAUGGU	chr2:37229727-37229971(-)$1	244	185	211	22.9967
AUACUUUAUUUACCCAUGUGUAUAUU	chr2:131879228-131879454(-)$1	226	167	193	20.2367
CCGUGGUCCAGCUUUAUUUACAGGCA	chr5:108931770-108931998(+)$1	228	136	162	20.4231
AUUUGAAAAGAAAGAUAAUCAGGUAU	chr2:168043134-168043372(-)$1	238	170	196	20.9803
UCCAGGAAAAAAUUUAAAUGAGAUGA	chr13:34993398-34993627(+)$1	229	50	76	19.8985
AGAGUAAAAUAACAAGCUAUUCACAC	chr11:115883863-115884089(-)$1	226	124	150	20.0929
CUGUAAGACCAUUUGAGUAUUGUUUC	chr2:6463366-6463597(-)$1	231	72	98	22.6115
GCUGUAAUGUUUUUAAAUGCAGUGGC	chr14:35560229-35560460(+)$1	231	62	88	23.0323
AAUAUAAAUGCUGCUAAUAUAUUUCC	chr3:88883079-88883306(+)$1	227	40	66	23.1676
CUUGUGAAAAUCUGGGCCACAGACGA	chr9:82826468-82826694(-)$1	226	35	61	23.9234
CUGCGAUAAUGUUUGGACUUUUGUAU	chr9:69867156-69867386(+)$1	230	62	88	20.8304
UGGGGGGAAAAAAAAUCAAUCUUUAU	chr15:38419841-38420094(-)$1	253	44	70	23.2985
ACUACAAGUUGUAAUGUGUGUUAUCU	chr8:41578059-41578297(-)$1	238	187	213	22.8598
AAUGAGCUUUCAGAAUACUUAUUGUA	chr1:63098929-63099187(-)$1	258	73	99	23.4148
UGCUUAAAAAAUUACCUGUAAGCAUA	chr8:24052548-24052786(+)$1	238	56	82	23.4890
UAUGAUCAAGGAUAUGGAAAUUAUAA	chr5:100465401-100465659(-)$1	258	27	53	23.2068
CCCCAAAUUCCAUUUUAUUGGGAACC	chr2:153594141-153594366(+)$1	225	51	77	19.6608
UCUCUUGUUGUUUUCCCAAAGAAUUU	chr11:79845275-79845530(+)$1	255	14	40	21.9583
UCCUUUUUUGUUUACAUAGGGAACAA	chr10:117252138-117252363(-)$1	225	185	211	19.9617
UUUCUGUUUCUUCUGUCAUUCAGAGA	chr9:64564608-64564839(-)$1	231	21	47	21.3005
AAUUCCGAAGUGUUUAAGGAACUCUU	chr4:123027679-123027907(-)$1	228	188	214	23.0524
UUUGUGUCUUCCUAUCUCCGCAGUAC	chr12:86266575-86266806(-)$1	231	14	40	23.2169
AUGUCGUUAUUUUCCAUUUGACAUUA	chr7:97356843-97357073(+)$1	230	142	168	20.8770
CUUCAGUGUUAUUGUUUCUGGAGCCA	chr3:60430835-60431063(+)$1	228	138	164	20.2767
UAGUCCAGAUCAAUGAAGGACCAGAC	chr11:77523192-77523458(+)$1	266	29	55	22.9787
AUUUGUUCCCCUUGUAUGCUCUUAAC	chr11:86313209-86313440(-)$1	231	188	214	21.7172
CCAGCUCUGGAGAAACUGCUGCCUCA	chr10:74814958-74815189(+)$1	231	49	75	19.1054
UCCUUUUUUGUUUACAUAGGGAACAA	chr10:117251984-117252209(-)$1	225	31	57	19.9617
UUUAUGAAAGAAUUUAAAUAAAAAAA	chr15:81481626-81481851(+)$1	225	194	220	20.4619
CUUCCACCAUUCCAGAAAAGCCACUU	chr10:79325993-79326220(+)$1	227	50	76	20.4742
GACACAAUAACAAAAAAUGUUUGAGG	chr3:60431202-60431458(+)$1	256	63	89	22.0753
GACACGACACGUAUGACCGUGCAUGU	chr18:35063588-35063819(-)$1	231	185	211	23.1159
CCAUCACACACAGACCAGACGGGUGG	chr16:50196585-50196814(-)$1	229	201	227	21.2675
UGUAAUGUUUGUUUUAUCGAUUACAA	chr18:42500887-42501116(+)$1	229	122	148	21.8721
AAUAAAUUCAAAAUUUUUUUAAUUCA	chr12:8712656-8712931(+)$1	275	222	248	23.3061
GUCUGACAGGAUUGGAAUCAGACUAU	chr2:153055087-153055320(-)$1	233	44	70	22.4543
AACCGUAUAUUGACCUAAUGGAAAUG	chr11:51935419-51935659(+)$1	240	88	114	22.6927
CCUGAACACUUGACACCUUGAGGGUA	chr11:87428726-87428978(+)$1	252	15	41	22.3849
UAAAGCUUUUUGUUUUCUGCUUAAGG	chr3:16113919-16114152(+)$1	233	143	169	22.7429
GCAAUACCUCAAUUUUUCAUAUUGCA	chr11:31833535-31833761(+)$1	226	143	169	23.2985

#DB
(.(((............))).)))))	chr19:41289138-41289386(-)$1	1	207	233	23.4218
((((((...........))))))...	chr1:132615937-132616160(+)$1	1	123	149	20.2767
((((((...........)))))))..	chrX:12869384-12869611(+)$1	1	129	155	22.2397
(.(((.............))).))..	chr5:147104129-147104368(+)$1	1	110	136	21.3823
(((((............)))))))).	chr1:180259109-180259343(-)$1	1	131	157	22.7047
((((((...........)))).))))	chr7:104834683-104834914(+)$1	1	160	186	22.6272
.(((((............)))))...	chr9:88348937-88349172(-)$1	1	132	158	20.1270
(((((................)))))	chr11:96178399-96178623(+)$1	1	118	144	20.2986
((((((.............)))))))	chr6:72382798-72383024(-)$1	1	64	90	23.2985
((((((............))))))).	chr16:23965510-23965764(-)$1	1	58	84	22.9320
(...((.............))..)))	chr10:62480738-62481001(-)$1	1	121	147	21.1428
(.((................))))))	chr15:102263086-102263309(+)$1	1	118	144	19.4691
(((((............)))))))))	chr11:31832210-31832435(+)$1	1	9	35	22.8237
..((((.............))))..)	chrX:39629424-39629660(+)$1	1	135	161	22.4280
.(((((.............))))).)	chr2:37229727-37229971(-)$1	1	185	211	22.9967
((((.............)))))))))	chr2:131879228-131879454(-)$1	1	167	193	20.2367
..((((...........))))((((.	chr5:108931770-108931998(+)$1	1	136	162	20.4231
((((((............))))))..	chr2:168043134-168043372(-)$1	1	170	196	20.9803
((((..............)).)))))	chr13:34993398-34993627(+)$1	1	50	76	19.8985
.(((((...........)))))....	chr11:115883863-115884089(-)$1	1	124	150	20.0929
(.(((............))).)))))	chr2:6463366-6463597(-)$1	1	72	98	22.6115
.(((((...........)))))))))	chr14:35560229-35560460(+)$1	1	62	88	23.0323
(.((((...........)))))))))	chr3:88883079-88883306(+)$1	1	40	66	23.1676
((.(((...........)))))))))	chr9:82826468-82826694(-)$1	1	35	61	23.9234
((((((..............))))).	chr9:69867156-69867386(+)$1	1	62	88	20.8304
((((((.............)))))))	chr15:38419841-38420094(-)$1	1	44	70	23.2985
(..(((............)))..)))	chr8:41578059-41578297(-)$1	1	187	213	22.8598
((((((...........)))))))((	chr1:63098929-63099187(-)$1	1	73	99	23.4148
((((((............))))))).	chr8:24052548-24052786(+)$1	1	56	82	23.4890
((((((.............)))))))	chr5:100465401-100465659(-)$1	1	27	53	23.2068
)(((((...........))))).(((	chr2:153594141-153594366(+)$1	1	51	77	19.6608
(.((((............))))))..	chr11:79845275-79845530(+)$1	1	14	40	21.9583
((((.............)))))))).	chr10:117252138-117252363(-)$1	1	185	211	19.9617
((((((..............))))))	chr9:64564608-64564839(-)$1	1	21	47	21.3005
(.((((...........)))).))))	chr4:123027679-123027907(-)$1	1	188	214	23.0524
(..(((............))))))))	chr12:86266575-86266806(-)$1	1	14	40	23.2169
((((((............)))))).)	chr7:97356843-97357073(+)$1	1	142	168	20.8770
((((((...........))))))...	chr3:60430835-60431063(+)$1	1	138	164	20.2767
(.((((...........)))).)..)	chr11:77523192-77523458(+)$1	1	29	55	22.9787
(...((...........))...))))	chr11:86313209-86313440(-)$1	1	188	214	21.7172
.((((............))))(((((	chr10:74814958-74815189(+)$1	1	49	75	19.1054
((((.............)))))))).	chr10:117251984-117252209(-)$1	1	31	57	19.9617
(((((............))))).)))	chr15:81481626-81481851(+)$1	1	194	220	20.4619
(((..............))))(((((	chr10:79325993-79326220(+)$1	1	50	76	20.4742
((((.............)))))((((	chr3:60431202-60431458(+)$1	1	63	89	22.0753
..((((...........))))..)))	chr18:35063588-35063819(-)$1	1	185	211	23.1159
((.((............)).))))).	chr16:50196585-50196814(-)$1	1	201	227	21.2675
((((((.............)))))))	chr18:42500887-42501116(+)$1	1	122	148	21.8721
((((((...........))).)))))	chr12:8712656-8712931(+)$1	1	222	248	23.3061
((((((...........)))))))))	chr2:153055087-153055320(-)$1	1	44	70	22.4543
..((((...........))))..)))	chr11:51935419-51935659(+)$1	1	88	114	22.6927
(((.((...........)).))))))	chr11:87428726-87428978(+)$1	1	15	41	22.3849
(.((((............))))..))	chr3:16113919-16114152(+)$1	1	143	169	22.7429
((((((.............)))))))	chr11:31833535-31833761(+)$1	1	143	169	23.2985

#PSSM
g : 0.18	f : 0.14	e : 0.14	d : 0.12	= : 0.05	h : 0.05	b : 0.03	i : 0.03	! : 0.03	[ : 0.03	: : 0.03	" : 0.03	% : 0.01	c : 0.01	a : 0.01	
e : 0.22	[ : 0.16	g : 0.14	f : 0.12	! : 0.07	d : 0.05	" : 0.05	h : 0.05	= : 0.03	i : 0.03	: : 0.01	
d : 0.22	e : 0.20	g : 0.12	f : 0.11	c : 0.05	h : 0.05	= : 0.03	" : 0.03	b : 0.03	i : 0.03	[ : 0.03	! : 0.03	
d : 0.20	e : 0.16	c : 0.12	g : 0.12	f : 0.11	b : 0.05	h : 0.05	= : 0.03	" : 0.03	i : 0.03	w : 0.01	[ : 0.01	
d : 0.20	e : 0.14	c : 0.12	g : 0.12	f : 0.11	b : 0.07	v : 0.07	= : 0.03	i : 0.03	w : 0.03	y : 0.01	
d : 0.18	u : 0.12	g : 0.12	f : 0.11	e : 0.11	v : 0.09	c : 0.07	b : 0.05	y : 0.03	w : 0.03	= : 0.01	i : 0.01	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
t : 0.35	u : 0.29	v : 0.24	w : 0.07	y : 0.03	
v : 0.16	d : 0.16	u : 0.16	e : 0.11	c : 0.07	f : 0.05	h : 0.05	w : 0.05	b : 0.05	g : 0.03	y : 0.03	i : 0.01	
d : 0.20	v : 0.14	c : 0.12	e : 0.12	f : 0.09	g : 0.07	b : 0.07	h : 0.05	y : 0.03	w : 0.03	i : 0.01	
d : 0.22	e : 0.14	c : 0.12	g : 0.12	f : 0.11	h : 0.05	y : 0.03	b : 0.03	w : 0.03	] : 0.03	i : 0.01	= : 0.01	3 : 0.01	
d : 0.22	e : 0.20	g : 0.14	f : 0.11	] : 0.07	c : 0.05	h : 0.05	b : 0.03	i : 0.03	y : 0.01	= : 0.01	3 : 0.01	
e : 0.25	g : 0.18	f : 0.14	] : 0.07	2 : 0.07	d : 0.07	h : 0.05	= : 0.03	i : 0.03	b : 0.01	3 : 0.01	G : 0.01	
g : 0.20	f : 0.14	e : 0.14	d : 0.12	2 : 0.09	h : 0.05	b : 0.03	= : 0.03	i : 0.03	: : 0.03	c : 0.01	5 : 0.01	a : 0.01	G : 0.01	
g : 0.20	d : 0.16	e : 0.12	f : 0.09	c : 0.05	2 : 0.05	h : 0.05	: : 0.03	b : 0.03	5 : 0.03	= : 0.03	i : 0.03	G : 0.03	E : 0.01	
d : 0.18	g : 0.16	e : 0.11	: : 0.09	5 : 0.05	c : 0.05	= : 0.05	2 : 0.05	h : 0.05	f : 0.05	i : 0.03	G : 0.03	] : 0.01	E : 0.01	
d : 0.16	: : 0.14	g : 0.12	c : 0.09	5 : 0.05	= : 0.05	e : 0.05	i : 0.03	f : 0.03	2 : 0.03	G : 0.03	3 : 0.01	F : 0.01	[ : 0.01	4 : 0.01	E : 0.01	D : 0.01	a : 0.01	b : 0.01	

#score	1179.850723371861
#seq	54
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_UTR_m2_run1.txt

#BEAR
b####bbtttttttttttbb22bb	chr2:25036924-25037146(+)$1	222	91	115	19.4813
ggggggvvvvvvvvvvvvvggggg	chr5:34345489-34345720(+)$1	231	47	71	21.8166
!ddddwwwwwwwwwwwwwwdddd2	chr19:4319045-4319274(-)$1	229	74	98	21.8431
ddddwwwwwwwwwwwwwwdddd44	chr3:146102053-146102276(+)$1	223	104	128	21.2185
!a[cccuuuuuuuuuuuuccc]a2	chr6:52154246-52154509(-)$1	263	142	166	23.0958
cccyyyyyyyyyyyyyyyycccgg	chr4:41604973-41605196(-)$1	223	85	109	22.2411
ggggggtttttttttttggggggg	chrX:35917108-35917332(-)$1	224	165	189	20.5898
cddddxxxxxxxxxxxxxxxdddd	chr2:34678228-34678455(-)$1	227	47	71	18.8231
ccc[bbuuuuuuuuuuuubb]ccc	chr10:4540971-4541195(+)$1	224	172	196	22.3956
fffffftttttttttttffffffa	chr16:91662645-91662885(+)$1	240	150	174	19.6850
:eeeeeuuuuuuuuuuuueeeeee	chr3:143851951-143852207(-)$1	256	131	155	21.9071
iiiiiiwwwwwwwwwwwwwwiiii	chr1:168329375-168329598(-)$1	223	21	45	21.5752
bb[bbbbtttttttttttbb]bbb	chr4:133308589-133308819(-)$1	230	75	99	19.2178
eeeeyyyyyyyyyyyyyyyyeeee	chr7:134169725-134169987(-)$1	262	127	151	22.6731
HHHcccwwwwwwwwwwwwwwccc:	chr6:72383154-72383385(-)$1	231	205	229	19.1253
eeeeewwwwwwwwwwwwwweeeee	chr5:144181994-144182218(+)$1	224	116	140	21.9919
ddddxxxxxxxxxxxxxxxddddd	chr5:14681841-14682068(+)$1	227	126	150	18.7635
ggggyyyyyyyyyyyyyyyygggg	chr12:110053859-110054101(+)$1	242	146	170	22.8135
DDdddduuuuuuuuuuuudddd::	chr1:183127680-183127939(-)$1	259	156	180	18.9013
hhhhhhvvvvvvvvvvvvvhhhhh	chr13:24895050-24895271(+)$1	221	96	120	19.6698
cccxxxxxxxxxxxxxxxccc]gg	chr18:31942201-31942432(+)$1	231	98	122	18.5656
dcccyyyyyyyyyyyyyyyyccc]	chr11:96135969-96136205(+)$1	236	16	40	22.6606
ccccccuuuuuuuuuuuuccc]cc	chr5:96506272-96506501(-)$1	229	119	143	23.0245
a"""cccuuuuuuuuuuuuccc22	chr1:138524648-138524870(+)$1	222	122	146	21.4905
ff:cccwwwwwwwwwwwwwwccc:	chr10:127981003-127981228(-)$1	225	94	118	19.9655
a[bbwwwwwwwwwwwwwwbb]a]g	chr1:129699938-129700197(+)$1	259	133	157	21.0730
fffffvvvvvvvvvvvvvffffff	chr11:120822975-120823205(-)$1	230	106	130	20.6010
eeeeyyyyyyyyyyyyyyyyeeee	chr7:100006841-100007066(-)$1	225	25	49	22.6731
###bbvvvvvvvvvvvvvbb4444	chr7:97595780-97596023(+)$1	243	123	147	21.0219
"""bbvvvvvvvvvvvvvbb22dd	chr10:62480777-62481010(-)$1	233	131	155	20.8190
"eeeeeuuuuuuuuuuuueeeee4	chr11:69212905-69213138(-)$1	233	130	154	22.8694
hhhhyyyyyyyyyyyyyyyyhhhh	chr4:155192562-155192795(+)$1	233	41	65	21.3663
!ddddvvvvvvvvvvvvvdddd22	chr6:51411879-51412131(-)$1	252	156	180	21.3861
iiicccuuuuuuuuuuuuccc]ii	chr4:135421463-135421704(+)$1	241	157	181	23.0984
ggggyyyyyyyyyyyyyyyygggg	chr12:110053999-110054269(+)$1	270	6	30	22.8135
bbyyyyyyyyyyyyyyyybb22ee	chr9:109795110-109795331(+)$1	221	17	41	20.2693
b####bbtttttttttttbb22bb	chr2:25036816-25037074(+)$1	258	199	223	19.4813
ddbbwwwwwwwwwwwwwwbb]ddd	chr15:102328964-102329190(+)$1	226	65	89	20.7480
bb[cccvvvvvvvvvvvvvccc]b	chr7:117203210-117203440(-)$1	230	165	189	21.6088
d[dddduuuuuuuuuuuudddddd	chr2:34678276-34678538(-)$1	262	206	230	22.3388
ggddddwwwwwwwwwwwwwwdddd	chr2:144219001-144219222(+)$1	221	151	175	21.3946
gggggwwwwwwwwwwwwwwggggg	chr1:180259335-180259568(-)$1	233	162	186	22.0524
==dddduuuuuuuuuuuudddd:D	chr13:102454359-102454583(-)$1	224	75	99	20.7039
ddddyyyyyyyyyyyyyyyydddd	chr11:97023767-97023993(-)$1	226	10	34	22.3080
eeeeevvvvvvvvvvvvveeeee:	chr9:105299018-105299248(+)$1	230	152	176	21.1593
eeeeevvvvvvvvvvvvveeeeeg	chr15:102787137-102787357(+)$1	220	74	98	21.8425
f:eeeeettttttttttteeeee:	chr4:129324942-129325168(-)$1	226	26	50	19.1258
!eeeeeuuuuuuuuuuuueeeee3	chr5:119043300-119043526(+)$1	226	7	31	23.0621
ggggyyyyyyyyyyyyyyyygggg	chr7:109168600-109168825(-)$1	225	75	99	22.8135
fffffftttttttttttffffff:	chr3:60430835-60431065(+)$1	230	138	162	18.9767
ggggggtttttttttttggggggg	chr11:31269898-31270128(-)$1	230	88	112	20.5898
eeeeyyyyyyyyyyyyyyyyeeee	chr1:9714426-9714649(-)$1	223	10	34	22.6731
dddcccwwwwwwwwwwwwwwccc2	chr2:162760636-162760862(+)$1	226	15	39	21.6022
eeeexxxxxxxxxxxxxxxeeeee	chr3:68834226-68834454(+)$1	228	29	53	19.1483
b[ddddvvvvvvvvvvvvvdddd2	chr9:50424772-50425011(-)$1	239	194	218	21.5546
)eeeeettttttttttteeeeeff	chr7:112784167-112784391(-)$1	224	147	171	20.2424
ggggggvvvvvvvvvvvvvggggg	chr6:72382943-72383183(-)$1	240	115	139	21.8166
:eeeeeuuuuuuuuuuuueeeee:	chr11:84801972-84802198(-)$1	226	99	123	21.3094
a[dddduuuuuuuuuuuudddda]	chr7:28971935-28972165(+)$1	230	89	113	22.6555
"eeeeeuuuuuuuuuuuueeeee3	chr4:55093769-55093992(+)$1	223	150	174	23.0048
ff[cccvvvvvvvvvvvvvccc]f	chr15:27396627-27396871(+)$1	244	57	81	21.8217
fffffftttttttttttffffff:	chr11:94152534-94152764(-)$1	230	110	134	18.9767

#otherMatches

#Seq PSSM
UCUCUGCUGUACCUUCCCGCCAAC	chr2:25036924-25037146(+)$1	222	91	115	19.4813
GUACAGACCCCGCUCUCCCCUGUA	chr5:34345489-34345720(+)$1	231	47	71	21.8166
AACAGAUCACGAGAAAAGCCUGUG	chr19:4319045-4319274(-)$1	229	74	98	21.8431
CUGUAGAUUUUUAACAAAGCAGGU	chr3:146102053-146102276(+)$1	223	104	128	21.2185
ACACAUAUCAAAAAACAAAUGAGC	chr6:52154246-52154509(-)$1	263	142	166	23.0958
CCGGUUUCUAUUUUGCACACGGGC	chr4:41604973-41605196(-)$1	223	85	109	22.2411
ACCUCGUCCUUCUGCCUUGGGGUU	chrX:35917108-35917332(-)$1	224	165	189	20.5898
CGGGACUUCCUCAAACUCCUUCCC	chr2:34678228-34678455(-)$1	227	47	71	18.8231
GGCCACCUUUUUCCUGUCGUCGCC	chr10:4540971-4541195(+)$1	224	172	196	22.3956
GUGAGCAACACGCAGAAGCUCGCC	chr16:91662645-91662885(+)$1	240	150	174	19.6850
CUCCAUGAACCUGGGCUAAUGGGA	chr3:143851951-143852207(-)$1	256	131	155	21.9071
augggcaaugcagacgagacgccc	chr1:168329375-168329598(-)$1	223	21	45	21.5752
CUCGUCGUCUUCGUCCUUCGCACA	chr4:133308589-133308819(-)$1	230	75	99	19.2178
GCGGCCUCAUGAACUCCUUCCCGC	chr7:134169725-134169987(-)$1	262	127	151	22.6731
UAUGGCGUAAGUACAGAGAAGCCA	chr6:72383154-72383385(-)$1	231	205	229	19.1253
ACACAAAGAAACUUAAUGCUGUGU	chr5:144181994-144182218(+)$1	224	116	140	21.9919
GGAUGCCAAACAGAAACAGAUCCA	chr5:14681841-14682068(+)$1	227	126	150	18.7635
AGUAGUAAAAAUUUAAAAAAUACU	chr12:110053859-110054101(+)$1	242	146	170	22.8135
UCGGUGCCUAUAUCACAAUACCAA	chr1:183127680-183127939(-)$1	259	156	180	18.9013
CAGGAAAAAAAAUGACUUGUUUCU	chr13:24895050-24895271(+)$1	221	96	120	19.6698
UGAUACAUAGGGCUACACUCAUUA	chr18:31942201-31942432(+)$1	231	98	122	18.5656
GCUGUCCCUACACCAAAUACCAGA	chr11:96135969-96136205(+)$1	236	16	40	22.6606
GACUCAUAUGAACGUGCUUGGUGU	chr5:96506272-96506501(-)$1	229	119	143	23.0245
UUUAGCAAUCAAAUUUACAUGUAU	chr1:138524648-138524870(+)$1	222	122	146	21.4905
CCACUCAGAAACUAGGACAAGAGA	chr10:127981003-127981228(-)$1	225	94	118	19.9655
UGGACUACAAAGACACAUUCGACA	chr1:129699938-129700197(+)$1	259	133	157	21.0730
UUGUGUAAAUAAUAAAUUCAUAAU	chr11:120822975-120823205(-)$1	230	106	130	20.6010
CUUGCAAAGCAUAUCACCCUCAAG	chr7:100006841-100007066(-)$1	225	25	49	22.6731
AUGCUUGAAAGACUUAAUAGAAAC	chr7:97595780-97596023(+)$1	243	123	147	21.0219
AGACCAAUAGGAGGAAGAGGGGGU	chr10:62480777-62481010(-)$1	233	131	155	20.8190
ACGGGUUCCCUCAAGCCUgcccgc	chr11:69212905-69213138(-)$1	233	130	154	22.8694
AGAACCUGUUUUGACUUUUCUUUU	chr4:155192562-155192795(+)$1	233	41	65	21.3663
CAAGUGAUCAUUAAUAAAGCUUUU	chr6:51411879-51412131(-)$1	252	156	180	21.3861
UUGUGUACAACCUUUAAAACAUCA	chr4:135421463-135421704(+)$1	241	157	181	23.0984
AGUAGUAAAAAUUUAAAAAAUACU	chr12:110053999-110054269(+)$1	270	6	30	22.8135
CUUAACUUUAAUUUAUUCAGCUUC	chr9:109795110-109795331(+)$1	221	17	41	20.2693
UCUCUGCUGUACCUUCCCGCCAAC	chr2:25036816-25037074(+)$1	258	199	223	19.4813
GACUCCAGGUUUUAAAAUAGUUUG	chr15:102328964-102329190(+)$1	226	65	89	20.7480
ucggcucuuccuaucguuaagcag	chr7:117203210-117203440(-)$1	230	165	189	21.6088
CAUGCUGCCUGGUCUCUAAGCAGU	chr2:34678276-34678538(-)$1	262	206	230	22.3388
GAAGCUAAAGACAUCAGAAGAGCU	chr2:144219001-144219222(+)$1	221	151	175	21.3946
UUUUUAAACAUUCCACAAGAGGAA	chr1:180259335-180259568(-)$1	233	162	186	22.0524
AAUGCAAAAAUCUCUCCGUGCAGG	chr13:102454359-102454583(-)$1	224	75	99	20.7039
UGGGAUGAUGACCUGAGACCCCCA	chr11:97023767-97023993(-)$1	226	10	34	22.3080
GGAUCGAGCAAAAGAGAAGAUCCA	chr9:105299018-105299248(+)$1	230	152	176	21.1593
CUCGUCUUUUUUUUUUCCGCGGGU	chr15:102787137-102787357(+)$1	220	74	98	21.8425
CAGCAGCCCCGCACACCUGCUGCC	chr4:129324942-129325168(-)$1	226	26	50	19.1258
UCAAAACUAUUGCAAAUUUUUUGU	chr5:119043300-119043526(+)$1	226	7	31	23.0621
UGGUGGGGAAAUGAUGGAGAACCA	chr7:109168600-109168825(-)$1	225	75	99	22.8135
CUUCAGUGUUAUUGUUUCUGGAGC	chr3:60430835-60431065(+)$1	230	138	162	18.9767
CUCUCCAGAGAGCUACGGGAGGGC	chr11:31269898-31270128(-)$1	230	88	112	20.5898
CCAUGGAGGAACCUGAAGAGAUGG	chr1:9714426-9714649(-)$1	223	10	34	22.6731
AGGUUCUAAAAUGGUGGUAUGAAG	chr2:162760636-162760862(+)$1	226	15	39	21.6022
CAAGGCCCAGCAAAACAAACUUGA	chr3:68834226-68834454(+)$1	228	29	53	19.1483
GGAGUGGUUCUUCGUCUCACACUA	chr9:50424772-50425011(-)$1	239	194	218	21.5546
UGGCCCUGCAUCUGAAUGGGCCCU	chr7:112784167-112784391(-)$1	224	147	171	20.2424
CAAGGUGUCCUACAGAAAAACCUU	chr6:72382943-72383183(-)$1	240	115	139	21.8166
ACCAGCAAAGAGAAUGGGGCUGGG	chr11:84801972-84802198(-)$1	226	99	123	21.3094
GACUGGACUUGCUGCUACCCAGCU	chr7:28971935-28972165(+)$1	230	89	113	22.6555
AAAUUAAAGUUAUUUAAAUGGUUG	chr4:55093769-55093992(+)$1	223	150	174	23.0048
UGCGCUCCGCGCGCCUCCCAGCAC	chr15:27396627-27396871(+)$1	244	57	81	21.8217
UUUCUUUAAGACUUUUUAAGAAAU	chr11:94152534-94152764(-)$1	230	110	134	18.9767

#DB
(....((...........))..))	chr2:25036924-25037146(+)$1	1	91	115	19.4813
((((((.............)))))	chr5:34345489-34345720(+)$1	1	47	71	21.8166
.((((..............)))).	chr19:4319045-4319274(-)$1	1	74	98	21.8431
((((..............))))..	chr3:146102053-146102276(+)$1	1	104	128	21.2185
.(.(((............))).).	chr6:52154246-52154509(-)$1	1	142	166	23.0958
(((................)))((	chr4:41604973-41605196(-)$1	1	85	109	22.2411
((((((...........)))))))	chrX:35917108-35917332(-)$1	1	165	189	20.5898
)((((...............))))	chr2:34678228-34678455(-)$1	1	47	71	18.8231
(((.((............)).)))	chr10:4540971-4541195(+)$1	1	172	196	22.3956
((((((...........)))))))	chr16:91662645-91662885(+)$1	1	150	174	19.6850
.(((((............)))))(	chr3:143851951-143852207(-)$1	1	131	155	21.9071
((((((..............))))	chr1:168329375-168329598(-)$1	1	21	45	21.5752
((.((((...........)).)))	chr4:133308589-133308819(-)$1	1	75	99	19.2178
((((................))))	chr7:134169725-134169987(-)$1	1	127	151	22.6731
)))(((..............))).	chr6:72383154-72383385(-)$1	1	205	229	19.1253
(((((..............)))))	chr5:144181994-144182218(+)$1	1	116	140	21.9919
((((...............)))))	chr5:14681841-14682068(+)$1	1	126	150	18.7635
((((................))))	chr12:110053859-110054101(+)$1	1	146	170	22.8135
((((((............))))..	chr1:183127680-183127939(-)$1	1	156	180	18.9013
((((((.............)))))	chr13:24895050-24895271(+)$1	1	96	120	19.6698
(((...............))).))	chr18:31942201-31942432(+)$1	1	98	122	18.5656
((((................))).	chr11:96135969-96136205(+)$1	1	16	40	22.6606
((((((............))).))	chr5:96506272-96506501(-)$1	1	119	143	23.0245
(...(((............)))..	chr1:138524648-138524870(+)$1	1	122	146	21.4905
)).(((..............))).	chr10:127981003-127981228(-)$1	1	94	118	19.9655
(.((..............)).).)	chr1:129699938-129700197(+)$1	1	133	157	21.0730
(((((.............))))))	chr11:120822975-120823205(-)$1	1	106	130	20.6010
((((................))))	chr7:100006841-100007066(-)$1	1	25	49	22.6731
...((.............))....	chr7:97595780-97596023(+)$1	1	123	147	21.0219
...((.............))..))	chr10:62480777-62481010(-)$1	1	131	155	20.8190
.(((((............))))).	chr11:69212905-69213138(-)$1	1	130	154	22.8694
((((................))))	chr4:155192562-155192795(+)$1	1	41	65	21.3663
.((((.............))))..	chr6:51411879-51412131(-)$1	1	156	180	21.3861
((((((............))).))	chr4:135421463-135421704(+)$1	1	157	181	23.0984
((((................))))	chr12:110053999-110054269(+)$1	1	6	30	22.8135
((................))..))	chr9:109795110-109795331(+)$1	1	17	41	20.2693
(....((...........))..))	chr2:25036816-25037074(+)$1	1	199	223	19.4813
((((..............)).)))	chr15:102328964-102329190(+)$1	1	65	89	20.7480
((.(((.............))).)	chr7:117203210-117203440(-)$1	1	165	189	21.6088
(.((((............))))))	chr2:34678276-34678538(-)$1	1	206	230	22.3388
))((((..............))))	chr2:144219001-144219222(+)$1	1	151	175	21.3946
(((((..............)))))	chr1:180259335-180259568(-)$1	1	162	186	22.0524
))((((............)))).(	chr13:102454359-102454583(-)$1	1	75	99	20.7039
((((................))))	chr11:97023767-97023993(-)$1	1	10	34	22.3080
(((((.............))))).	chr9:105299018-105299248(+)$1	1	152	176	21.1593
(((((.............))))))	chr15:102787137-102787357(+)$1	1	74	98	21.8425
).(((((...........))))).	chr4:129324942-129325168(-)$1	1	26	50	19.1258
.(((((............))))).	chr5:119043300-119043526(+)$1	1	7	31	23.0621
((((................))))	chr7:109168600-109168825(-)$1	1	75	99	22.8135
((((((...........)))))).	chr3:60430835-60431065(+)$1	1	138	162	18.9767
((((((...........)))))))	chr11:31269898-31270128(-)$1	1	88	112	20.5898
((((................))))	chr1:9714426-9714649(-)$1	1	10	34	22.6731
((((((..............))).	chr2:162760636-162760862(+)$1	1	15	39	21.6022
((((...............)))))	chr3:68834226-68834454(+)$1	1	29	53	19.1483
(.((((.............)))).	chr9:50424772-50425011(-)$1	1	194	218	21.5546
.(((((...........)))))))	chr7:112784167-112784391(-)$1	1	147	171	20.2424
((((((.............)))))	chr6:72382943-72383183(-)$1	1	115	139	21.8166
.(((((............))))).	chr11:84801972-84802198(-)$1	1	99	123	21.3094
(.((((............))))).	chr7:28971935-28972165(+)$1	1	89	113	22.6555
.(((((............))))).	chr4:55093769-55093992(+)$1	1	150	174	23.0048
((.(((.............))).)	chr15:27396627-27396871(+)$1	1	57	81	21.8217
((((((...........)))))).	chr11:94152534-94152764(-)$1	1	110	134	18.9767

#PSSM
g : 0.14	d : 0.11	f : 0.11	e : 0.11	b : 0.09	c : 0.08	! : 0.06	a : 0.04	" : 0.04	: : 0.03	i : 0.03	h : 0.03	H : 0.01	D : 0.01	# : 0.01	= : 0.01	) : 0.01	
e : 0.20	g : 0.14	d : 0.12	f : 0.09	c : 0.08	[ : 0.06	# : 0.04	b : 0.04	i : 0.03	h : 0.03	" : 0.03	a : 0.01	H : 0.01	D : 0.01	= : 0.01	: : 0.01	
e : 0.22	d : 0.20	g : 0.12	c : 0.08	[ : 0.06	f : 0.06	# : 0.04	i : 0.03	h : 0.03	" : 0.03	b : 0.03	H : 0.01	: : 0.01	y : 0.01	
e : 0.22	d : 0.19	c : 0.14	g : 0.12	b : 0.08	f : 0.06	# : 0.03	y : 0.03	h : 0.03	[ : 0.01	i : 0.01	x : 0.01	" : 0.01	
y : 0.17	e : 0.16	d : 0.14	c : 0.14	g : 0.08	b : 0.06	f : 0.06	w : 0.04	x : 0.04	# : 0.03	i : 0.01	h : 0.01	
y : 0.17	c : 0.14	e : 0.11	w : 0.09	d : 0.09	v : 0.09	b : 0.06	g : 0.06	x : 0.06	f : 0.04	i : 0.01	h : 0.01	
u : 0.20	v : 0.19	w : 0.17	y : 0.17	t : 0.09	x : 0.06	b : 0.04	c : 0.01	e : 0.01	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.16	x : 0.06	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.16	x : 0.06	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.16	x : 0.06	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.16	x : 0.06	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.16	x : 0.06	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.16	x : 0.06	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.16	x : 0.06	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.16	x : 0.06	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.16	x : 0.06	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.16	x : 0.06	
u : 0.22	v : 0.19	w : 0.17	y : 0.17	t : 0.06	x : 0.06	f : 0.04	g : 0.03	e : 0.01	
y : 0.16	b : 0.14	e : 0.14	w : 0.12	v : 0.09	d : 0.09	c : 0.06	f : 0.06	x : 0.04	g : 0.03	u : 0.01	
e : 0.17	b : 0.14	d : 0.14	y : 0.14	c : 0.12	g : 0.08	w : 0.08	f : 0.06	x : 0.01	h : 0.01	
e : 0.22	d : 0.19	c : 0.19	g : 0.12	2 : 0.06	] : 0.06	f : 0.06	h : 0.03	i : 0.01	4 : 0.01	
e : 0.22	d : 0.20	c : 0.14	g : 0.12	2 : 0.06	] : 0.06	f : 0.06	h : 0.03	i : 0.01	b : 0.01	a : 0.01	4 : 0.01	
e : 0.22	g : 0.16	d : 0.14	c : 0.09	f : 0.08	b : 0.04	] : 0.04	4 : 0.03	a : 0.03	i : 0.03	: : 0.03	h : 0.03	2 : 0.03	
g : 0.19	: : 0.12	d : 0.11	e : 0.11	2 : 0.09	b : 0.06	4 : 0.04	f : 0.04	c : 0.03	i : 0.03	h : 0.03	] : 0.03	3 : 0.03	a : 0.01	D : 0.01	

#score	1314.5401321689692
#seq	62
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_UTR_m3_run2.txt

#BEAR
[cccqqqqqqqqccc]c	chr3:143851951-143852207(-)$1	256	14	31	14.1369
eeeeqqqqqqqqeeeee	chr3:58219519-58219749(+)$1	230	141	158	13.9417
!cccqqqqqqqqccc33	chr11:29088332-29088563(+)$1	231	118	135	14.3625
"cccqqqqqqqqccc33	chr2:25036924-25037146(+)$1	222	10	27	14.2546
[cccqqqqqqqqcccbb	chr4:133523717-133523952(-)$1	235	5	22	13.4828
eeeeqqqqqqqqeeeee	chr6:38768572-38768798(-)$1	226	112	129	13.9417
ddddqqqqqqqqdddd:	chr15:102866076-102866304(+)$1	228	112	129	12.4840
ii[aqqqqqqqqaiiii	chr12:112777960-112778181(+)$1	221	47	64	13.4123
ddddqqqqqqqqdddd]	chr5:100465408-100465636(-)$1	228	108	125	13.4845
[cccqqqqqqqqccc33	chr6:52151903-52152125(-)$1	222	27	44	14.3921
ffffqqqqqqqqfffff	chr3:87339826-87340048(+)$1	222	98	115	13.6614
eeeeqqqqqqqqeeeee	chr16:92077115-92077339(+)$1	224	44	61	13.9417
[cccqqqqqqqqccc33	chr4:131742569-131742798(-)$1	229	95	112	14.3921
ffffqqqqqqqqfffff	chr11:94152534-94152764(-)$1	230	206	223	13.6614
ffffqqqqqqqqfffff	chr18:35064206-35064429(-)$1	223	190	207	13.6614
!cccqqqqqqqqccc]i	chr11:87897014-87897242(+)$1	228	13	30	14.1390
ddddqqqqqqqqddddg	chr15:51795218-51795444(-)$1	226	15	32	13.3923
ffffqqqqqqqqfffff	chr16:91662645-91662885(+)$1	240	90	107	13.6614
ddddqqqqqqqqdddd3	chr16:16309418-16309650(+)$1	232	49	66	13.5619
d[bbqqqqqqqqbb]dd	chr10:42254433-42254663(+)$1	230	211	228	12.4507
eeeeqqqqqqqqeeeee	chr1:180259287-180259517(-)$1	230	207	224	13.9417
ffffqqqqqqqqfffff	chrX:101152413-101152641(-)$1	228	164	181	13.6614
eeeeqqqqqqqqeeeee	chr2:121836666-121836896(+)$1	230	67	84	13.9417
[cccqqqqqqqqcccgg	chr1:174078228-174078456(+)$1	228	65	82	14.1469
ddddqqqqqqqqdddd:	chr2:37230521-37230745(-)$1	224	173	190	12.4840
ddddqqqqqqqqdddd5	chr5:122770846-122771074(+)$1	228	9	26	12.6813
ffffqqqqqqqqfffff	chr18:64555804-64556029(+)$1	225	202	219	13.6614
ffffqqqqqqqqfffff	chr6:112669446-112669667(-)$1	221	133	150	13.6614
""bbqqqqqqqqbbeee	chr10:117252338-117252597(-)$1	259	38	55	12.8542
!cccqqqqqqqqccc33	chr11:86315511-86315735(-)$1	224	56	73	14.3625
ffffqqqqqqqqfffff	chr9:62643739-62643978(-)$1	239	86	103	13.6614
eeeeqqqqqqqqeeeee	chr15:98663571-98663815(-)$1	244	186	203	13.9417
ffffqqqqqqqqfffff	chr14:8922918-8923139(+)$1	221	160	177	13.6614
[cccqqqqqqqqccccc	chrX:11613883-11614110(-)$1	227	39	56	14.0555
ddddqqqqqqqqdddd]	chr11:87864660-87864948(+)$1	288	232	249	13.4845
ggggqqqqqqqqggggg	chr1:153668815-153669040(+)$1	225	60	77	13.6587
eeeeqqqqqqqqeeeee	chr5:96506272-96506501(-)$1	229	8	25	13.9417
Bcccqqqqqqqqccccc	chr15:98373733-98373962(-)$1	229	176	193	12.8488
ddddqqqqqqqqdddd2	chr1:173268537-173268768(+)$1	231	180	197	13.3211
ffffqqqqqqqqfffff	chr16:91662863-91663098(+)$1	235	131	148	13.6614
eeeeqqqqqqqqeeeee	chr9:123371095-123371341(+)$1	246	73	90	13.9417
ddddqqqqqqqqdddd:	chr7:134169725-134169987(-)$1	262	32	49	12.4840
ddddqqqqqqqqdddd]	chr12:8799266-8799487(+)$1	221	163	180	13.4845
[cccqqqqqqqqccccc	chr11:87862902-87863162(+)$1	260	193	210	14.0555
eeeeqqqqqqqqeeeee	chr11:51935428-51935657(+)$1	229	208	225	13.9417
[a[aqqqqqqqqa]a]e	chr9:62658992-62659253(-)$1	261	105	122	13.4382
ddddqqqqqqqqdddd]	chr3:110052646-110052882(-)$1	236	99	116	13.4845
eeeeqqqqqqqqeeeee	chr10:52137446-52137674(+)$1	228	31	48	13.9417
!!bbqqqqqqqqbb22a	chr6:52167316-52167538(-)$1	222	103	120	12.4377
##bbqqqqqqqqbb333	chr7:135585675-135585906(-)$1	231	157	174	12.8566
eeeeqqqqqqqqeeeee	chr2:34678276-34678538(-)$1	262	165	182	13.9417
ggggqqqqqqqqggggg	chr7:109168600-109168825(-)$1	225	3	20	13.6587
eeeeqqqqqqqqeeeee	chr11:80208900-80209151(+)$1	251	180	197	13.9417
eeeeqqqqqqqqeeeee	chr4:94716538-94716767(-)$1	229	169	186	13.9417
c[bbqqqqqqqqbb]cc	chr6:6827782-6828013(-)$1	231	160	177	12.6152
ddddqqqqqqqqdddd3	chr3:88991900-88992124(+)$1	224	200	217	13.5619
ddddqqqqqqqqdddd:	chr5:145942660-145942884(+)$1	224	198	215	12.4840
eeeeqqqqqqqqeeeee	chr17:32494335-32494565(-)$1	230	87	104	13.9417
ggggqqqqqqqqggggg	chr17:66797556-66797783(-)$1	227	157	174	13.6587
[cccqqqqqqqqccccc	chr11:87862968-87863229(+)$1	261	127	144	14.0555
eeeeqqqqqqqqeeeee	chr6:28779468-28779690(-)$1	222	192	209	13.9417
ffffqqqqqqqqfffff	chr16:23113148-23113389(+)$1	241	38	55	13.6614
eeeaqqqqqqqqa]eee	chrX:54640325-54640594(-)$1	269	138	155	13.6946
ffffqqqqqqqqfffff	chr9:62729432-62729659(-)$1	227	49	66	13.6614
bcccqqqqqqqqccc]b	chr7:73792582-73792812(-)$1	230	152	169	13.3782
ffffqqqqqqqqfffff	chr10:115922271-115922519(-)$1	248	14	31	13.6614
gggaqqqqqqqqa]ggg	chr14:21320358-21320597(-)$1	239	93	110	13.5070
!cccqqqqqqqqccc22	chr3:68834226-68834454(+)$1	228	86	103	13.9047
====qqqqqqqq=====	chr1:183141699-183141934(-)$1	235	11	28	13.6642
eeeeqqqqqqqqeeeee	chr11:80209227-80209456(+)$1	229	166	183	13.9417
ffffqqqqqqqqfffff	chr2:164860107-164860335(-)$1	228	146	163	13.6614
!cccqqqqqqqqccc33	chr9:106090940-106091160(+)$1	220	30	47	14.3625
!cccqqqqqqqqccc22	chr17:23957409-23957648(+)$1	239	62	79	13.9047
ffffqqqqqqqqfffff	chr13:100194825-100195050(-)$1	225	46	63	13.6614
##bbqqqqqqqqbb333	chr11:102152840-102153090(-)$1	250	187	204	12.8566

#otherMatches

#Seq PSSM
UCUGCAGUAGACCAGUC	chr3:143851951-143852207(-)$1	256	14	31	14.1369
CACCACGGCUCAGGUGG	chr3:58219519-58219749(+)$1	230	141	158	13.9417
UUACAGGGUACAGUACA	chr11:29088332-29088563(+)$1	231	118	135	14.3625
AUCUCAUCACCAAGGCC	chr2:25036924-25037146(+)$1	222	10	27	14.2546
AGGUGAGUUUAAACCCC	chr4:133523717-133523952(-)$1	235	5	22	13.4828
UGCUGGAAACGGGGCAC	chr6:38768572-38768798(-)$1	226	112	129	13.9417
CGAGAUCGCCCACUCGC	chr15:102866076-102866304(+)$1	228	112	129	12.4840
UUAGGUUGAGGGCAAAG	chr12:112777960-112778181(+)$1	221	47	64	13.4123
AUAUGGACAGGGAUAUG	chr5:100465408-100465636(-)$1	228	108	125	13.4845
UGCUGUUGUAGAGGUGA	chr6:52151903-52152125(-)$1	222	27	44	14.3921
UGAAACACUACCUUCAU	chr3:87339826-87340048(+)$1	222	98	115	13.6614
AAAGGACAAAGACUUUG	chr16:92077115-92077339(+)$1	224	44	61	13.9417
AUUGGAAUUUCACAAAA	chr4:131742569-131742798(-)$1	229	95	112	14.3921
ACGUUAGUGCUCAUGUG	chr11:94152534-94152764(-)$1	230	206	223	13.6614
CUUCCUUUGAUCGGAGA	chr18:35064206-35064429(-)$1	223	190	207	13.6614
AAUUUUAUAAAUGAUCU	chr11:87897014-87897242(+)$1	228	13	30	14.1390
UAAGGGAAACUGCUUAU	chr15:51795218-51795444(-)$1	226	15	32	13.3923
GUUUUAGAAGCCAAACU	chr16:91662645-91662885(+)$1	240	90	107	13.6614
CAGGUAACAAAUCCUGA	chr16:16309418-16309650(+)$1	232	49	66	13.5619
GCGCAGACACUGGCAUA	chr10:42254433-42254663(+)$1	230	211	228	12.4507
UUAAUUGCAGUUUUAAA	chr1:180259287-180259517(-)$1	230	207	224	13.9417
UUUUAAAAGGUGGAAAC	chrX:101152413-101152641(-)$1	228	164	181	13.6614
GUGGGUUUGUAGCCACU	chr2:121836666-121836896(+)$1	230	67	84	13.9417
GCCAGUGUAAGAUGGCG	chr1:174078228-174078456(+)$1	228	65	82	14.1469
AAAGAAAAUUUACUUUA	chr2:37230521-37230745(-)$1	224	173	190	12.4840
CUCAAUAGUGGCUGAGU	chr5:122770846-122771074(+)$1	228	9	26	12.6813
CAUGAACCUGGGCAUGU	chr18:64555804-64556029(+)$1	225	202	219	13.6614
GGGCACCGUGUGGCCCA	chr6:112669446-112669667(-)$1	221	133	150	13.6614
CUGUAUACUUUAACACA	chr10:117252338-117252597(-)$1	259	38	55	12.8542
uaaauauauauuuuuCA	chr11:86315511-86315735(-)$1	224	56	73	14.3625
GAUGUGUAAAAUCGUUU	chr9:62643739-62643978(-)$1	239	86	103	13.6614
AAAACUACUAAUUUUUG	chr15:98663571-98663815(-)$1	244	186	203	13.9417
UAAAGUUAUACAUUUAA	chr14:8922918-8923139(+)$1	221	160	177	13.6614
CUAUUUUUUUCUGUACU	chrX:11613883-11614110(-)$1	227	39	56	14.0555
UUCUAAAUUUAAAGAAA	chr11:87864660-87864948(+)$1	288	232	249	13.4845
AGAAAAAAAACAUUCUG	chr1:153668815-153669040(+)$1	225	60	77	13.6587
AAAAAAUUGUUCUUUUC	chr5:96506272-96506501(-)$1	229	8	25	13.9417
UGCAUUUGAAUUUGUCC	chr15:98373733-98373962(-)$1	229	176	193	12.8488
UCAUCACUCGCCAUGAC	chr1:173268537-173268768(+)$1	231	180	197	13.3211
GCUGUUUGGUACCAGCC	chr16:91662863-91663098(+)$1	235	131	148	13.6614
uucaccaagcguuggau	chr9:123371095-123371341(+)$1	246	73	90	13.9417
GGCCCCCACUGUGGCCG	chr7:134169725-134169987(-)$1	262	32	49	12.4840
UCCAGGAUACUGUGGAA	chr12:8799266-8799487(+)$1	221	163	180	13.4845
CUCUCGUACAUAAGAUG	chr11:87862902-87863162(+)$1	260	193	210	14.0555
UCAUCAACAGCCGUGAC	chr11:51935428-51935657(+)$1	229	208	225	13.9417
GUGGCGACCAAACGGGU	chr9:62658992-62659253(-)$1	261	105	122	13.4382
AAAGACCAAAGACUUUG	chr3:110052646-110052882(-)$1	236	99	116	13.4845
GCGGAUAAGACCCUGUC	chr10:52137446-52137674(+)$1	228	31	48	13.9417
GCUGCCGGACAACAAAU	chr6:52167316-52167538(-)$1	222	103	120	12.4377
CUUCGAUCCUUAGACAC	chr7:135585675-135585906(-)$1	231	157	174	12.8566
UUUUUAUUUGUUAAAAU	chr2:34678276-34678538(-)$1	262	165	182	13.9417
CCCACAAAGACUUGGGU	chr7:109168600-109168825(-)$1	225	3	20	13.6587
GAGAUUAAACCUUUUCU	chr11:80208900-80209151(+)$1	251	180	197	13.9417
UGCAAUAGAGACUGUAG	chr4:94716538-94716767(-)$1	229	169	186	13.9417
AGAGGAAUUAAACUGUA	chr6:6827782-6828013(-)$1	231	160	177	12.6152
GGGCACUGGGUAGCCCA	chr3:88991900-88992124(+)$1	224	200	217	13.5619
GUUCGGUUAUAAGAAUA	chr5:145942660-145942884(+)$1	224	198	215	12.4840
GGUCAAGGCCAAGACCU	chr17:32494335-32494565(-)$1	230	87	104	13.9417
UCGGAAGCCGACCCGGG	chr17:66797556-66797783(-)$1	227	157	174	13.6587
CUCUCGUACAUAAGAUG	chr11:87862968-87863229(+)$1	261	127	144	14.0555
AAAACAAAACUAUUUUC	chr6:28779468-28779690(-)$1	222	192	209	13.9417
UUUAAAUAGUACUAAAG	chr16:23113148-23113389(+)$1	241	38	55	13.6614
ACUCAAGCAGCCGAAGU	chrX:54640325-54640594(-)$1	269	138	155	13.6946
AACUAUAUUUUCAGUUU	chr9:62729432-62729659(-)$1	227	49	66	13.6614
UGUGGACAAGAUUACGA	chr7:73792582-73792812(-)$1	230	152	169	13.3782
CCUCAUUUUUAGGAGGU	chr10:115922271-115922519(-)$1	248	14	31	13.6614
UGCCACAGAGGAGAGCA	chr14:21320358-21320597(-)$1	239	93	110	13.5070
UGCUAUUACUAAGGCCC	chr3:68834226-68834454(+)$1	228	86	103	13.9047
AGGGCCCGGUCCUCCUU	chr1:183141699-183141934(-)$1	235	11	28	13.6642
UACAUUGCUAUUUGUAA	chr11:80209227-80209456(+)$1	229	166	183	13.9417
gguagcggugagugccg	chr2:164860107-164860335(-)$1	228	146	163	13.6614
GGCUAUUUAUACAGUGA	chr9:106090940-106091160(+)$1	220	30	47	14.3625
UGACAGCCAUCAGUCUU	chr17:23957409-23957648(+)$1	239	62	79	13.9047
GUGGUUUGCGCCCCAUU	chr13:100194825-100195050(-)$1	225	46	63	13.6614
AGCCUGGCAUAUGGACA	chr11:102152840-102153090(-)$1	250	187	204	12.8566

#DB
.(((........))).)	chr3:143851951-143852207(-)$1	1	14	31	14.1369
((((........)))))	chr3:58219519-58219749(+)$1	1	141	158	13.9417
.(((........)))..	chr11:29088332-29088563(+)$1	1	118	135	14.3625
.(((........)))..	chr2:25036924-25037146(+)$1	1	10	27	14.2546
.(((........)))))	chr4:133523717-133523952(-)$1	1	5	22	13.4828
((((........)))))	chr6:38768572-38768798(-)$1	1	112	129	13.9417
((((........)))).	chr15:102866076-102866304(+)$1	1	112	129	12.4840
((.(........)))))	chr12:112777960-112778181(+)$1	1	47	64	13.4123
((((........)))).	chr5:100465408-100465636(-)$1	1	108	125	13.4845
.(((........)))..	chr6:52151903-52152125(-)$1	1	27	44	14.3921
((((........)))))	chr3:87339826-87340048(+)$1	1	98	115	13.6614
((((........)))))	chr16:92077115-92077339(+)$1	1	44	61	13.9417
.(((........)))..	chr4:131742569-131742798(-)$1	1	95	112	14.3921
((((........)))))	chr11:94152534-94152764(-)$1	1	206	223	13.6614
((((........)))))	chr18:35064206-35064429(-)$1	1	190	207	13.6614
.(((........))).)	chr11:87897014-87897242(+)$1	1	13	30	14.1390
((((........))))(	chr15:51795218-51795444(-)$1	1	15	32	13.3923
((((........)))))	chr16:91662645-91662885(+)$1	1	90	107	13.6614
((((........)))).	chr16:16309418-16309650(+)$1	1	49	66	13.5619
(.((........)).))	chr10:42254433-42254663(+)$1	1	211	228	12.4507
((((........)))))	chr1:180259287-180259517(-)$1	1	207	224	13.9417
((((........)))))	chrX:101152413-101152641(-)$1	1	164	181	13.6614
((((........)))))	chr2:121836666-121836896(+)$1	1	67	84	13.9417
.(((........)))))	chr1:174078228-174078456(+)$1	1	65	82	14.1469
((((........)))).	chr2:37230521-37230745(-)$1	1	173	190	12.4840
((((........)))).	chr5:122770846-122771074(+)$1	1	9	26	12.6813
((((........)))))	chr18:64555804-64556029(+)$1	1	202	219	13.6614
((((........)))))	chr6:112669446-112669667(-)$1	1	133	150	13.6614
..((........)))))	chr10:117252338-117252597(-)$1	1	38	55	12.8542
.(((........)))..	chr11:86315511-86315735(-)$1	1	56	73	14.3625
((((........)))))	chr9:62643739-62643978(-)$1	1	86	103	13.6614
((((........)))))	chr15:98663571-98663815(-)$1	1	186	203	13.9417
((((........)))))	chr14:8922918-8923139(+)$1	1	160	177	13.6614
.(((........)))))	chrX:11613883-11614110(-)$1	1	39	56	14.0555
((((........)))).	chr11:87864660-87864948(+)$1	1	232	249	13.4845
((((........)))))	chr1:153668815-153669040(+)$1	1	60	77	13.6587
((((........)))))	chr5:96506272-96506501(-)$1	1	8	25	13.9417
)(((........)))((	chr15:98373733-98373962(-)$1	1	176	193	12.8488
((((........)))).	chr1:173268537-173268768(+)$1	1	180	197	13.3211
((((........)))))	chr16:91662863-91663098(+)$1	1	131	148	13.6614
((((........)))))	chr9:123371095-123371341(+)$1	1	73	90	13.9417
((((........)))).	chr7:134169725-134169987(-)$1	1	32	49	12.4840
((((........)))).	chr12:8799266-8799487(+)$1	1	163	180	13.4845
.(((........)))))	chr11:87862902-87863162(+)$1	1	193	210	14.0555
((((........)))))	chr11:51935428-51935657(+)$1	1	208	225	13.9417
.(.(........).).)	chr9:62658992-62659253(-)$1	1	105	122	13.4382
((((........)))).	chr3:110052646-110052882(-)$1	1	99	116	13.4845
((((........)))))	chr10:52137446-52137674(+)$1	1	31	48	13.9417
..((........))..)	chr6:52167316-52167538(-)$1	1	103	120	12.4377
..((........))...	chr7:135585675-135585906(-)$1	1	157	174	12.8566
((((........)))))	chr2:34678276-34678538(-)$1	1	165	182	13.9417
((((........)))))	chr7:109168600-109168825(-)$1	1	3	20	13.6587
((((........)))))	chr11:80208900-80209151(+)$1	1	180	197	13.9417
((((........)))))	chr4:94716538-94716767(-)$1	1	169	186	13.9417
(.((........)).))	chr6:6827782-6828013(-)$1	1	160	177	12.6152
((((........)))).	chr3:88991900-88992124(+)$1	1	200	217	13.5619
((((........)))).	chr5:145942660-145942884(+)$1	1	198	215	12.4840
((((........)))))	chr17:32494335-32494565(-)$1	1	87	104	13.9417
((((........)))))	chr17:66797556-66797783(-)$1	1	157	174	13.6587
.(((........)))))	chr11:87862968-87863229(+)$1	1	127	144	14.0555
((((........)))))	chr6:28779468-28779690(-)$1	1	192	209	13.9417
((((........)))))	chr16:23113148-23113389(+)$1	1	38	55	13.6614
((((........).)))	chrX:54640325-54640594(-)$1	1	138	155	13.6946
((((........)))))	chr9:62729432-62729659(-)$1	1	49	66	13.6614
((((........))).)	chr7:73792582-73792812(-)$1	1	152	169	13.3782
((((........)))))	chr10:115922271-115922519(-)$1	1	14	31	13.6614
((((........).)))	chr14:21320358-21320597(-)$1	1	93	110	13.5070
.(((........)))..	chr3:68834226-68834454(+)$1	1	86	103	13.9047
((((........)))))	chr1:183141699-183141934(-)$1	1	11	28	13.6642
((((........)))))	chr11:80209227-80209456(+)$1	1	166	183	13.9417
((((........)))))	chr2:164860107-164860335(-)$1	1	146	163	13.6614
.(((........)))..	chr9:106090940-106091160(+)$1	1	30	47	14.3625
.(((........)))..	chr17:23957409-23957648(+)$1	1	62	79	13.9047
((((........)))))	chr13:100194825-100195050(-)$1	1	46	63	13.6614
..((........))...	chr11:102152840-102153090(-)$1	1	187	204	12.8566

#PSSM
e : 0.22	f : 0.20	d : 0.18	[ : 0.12	! : 0.09	g : 0.05	" : 0.02	# : 0.02	i : 0.01	B : 0.01	c : 0.01	b : 0.01	= : 0.01	
c : 0.22	e : 0.22	f : 0.20	d : 0.17	g : 0.05	[ : 0.02	# : 0.02	i : 0.01	" : 0.01	a : 0.01	! : 0.01	= : 0.01	
c : 0.22	e : 0.22	f : 0.20	d : 0.17	b : 0.08	g : 0.05	[ : 0.02	= : 0.01	
c : 0.22	e : 0.21	f : 0.20	d : 0.17	b : 0.08	a : 0.05	g : 0.04	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.22	e : 0.21	f : 0.20	d : 0.17	b : 0.08	a : 0.05	g : 0.04	= : 0.01	
c : 0.22	e : 0.21	f : 0.20	d : 0.17	b : 0.08	g : 0.04	] : 0.04	i : 0.01	= : 0.01	
e : 0.24	c : 0.22	f : 0.20	d : 0.17	g : 0.05	] : 0.02	3 : 0.02	i : 0.01	a : 0.01	2 : 0.01	= : 0.01	
e : 0.24	f : 0.20	d : 0.18	3 : 0.10	g : 0.06	c : 0.06	] : 0.05	2 : 0.04	b : 0.01	i : 0.01	= : 0.01	
e : 0.25	f : 0.20	3 : 0.13	c : 0.08	g : 0.08	: : 0.05	] : 0.05	2 : 0.04	b : 0.02	i : 0.02	d : 0.01	5 : 0.01	a : 0.01	= : 0.01	

#score	1021.3834679192297
#seq	75
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_CDS_m1_run1.txt

#BEAR
ggg[dddd!!bboooooobbddddggggg	chr7:3158217-3158427(-)$1	210	116	145	12.5307
[eeeee[ccc[aooooooa]ccceeeee]	chr7:20282283-20282510(-)$1	227	121	150	13.3988
hhhhhhhh[cccooooooccchhhhhhhh	chr7:63181562-63181784(+)$1	222	6	35	11.4666
!!eeeee####aooooooa4444eeeee2	chr5:32788276-32788493(+)$1	217	3	32	13.2625
iiii####ddddoooooodddd4444iii	chr13:45008526-45008736(+)$1	210	144	173	13.8013
dddddddeeeeeooooooeeeee22dddd	chr6:88456045-88456255(-)$1	210	117	146	11.7721
cc[eeeee[cccnnnnnccc]eeeeeccc	chr14:122311709-122311919(+)$1	210	115	144	9.6850
$$$$$gggggggooooooggggggg333i	chrM:13502-13722(-)$1	220	153	182	13.7803
$$$$$gggggggooooooggggggg6666	chr1:57445436-57445648(-)$1	212	14	43	11.6769
ee!!eeeee[bboooooobb]eeeee22e	chr4:24444210-24444423(+)$1	213	77	106	12.3963
heeeee[eeeeeooooooeeeee333eee	chr14:31828437-31828650(-)$1	213	81	110	13.0944
"ccc"""eeeeeooooooeeeee22ccc]	chr15:82685634-82685854(-)$1	220	137	166	13.4100
[dddd[bb[cccooooooccc]bb]dddd	chr17:33786672-33786890(-)$1	218	43	72	12.5643
ooccc]ccccccoooooocccffffff""	chr6:122687121-122687338(-)$1	217	31	60	11.8249
[ccc[cccggggggglllggggggg4444	chr9:110844933-110845154(-)$1	221	91	120	9.5798
ggggggg####aooooooa333ggggggg	chr3:40630742-40630958(-)$1	216	134	163	13.8823
ieeeee!!ddddoooooodddd22eeeee	chr10:62482146-62482358(-)$1	212	83	112	13.0935
((eeeeeeeeeeooooooeeeee333eee	chr11:115855486-115855705(+)$1	219	157	186	11.8369
c!!dddd!!cccnnnnnccc]dddd]ccc	chr5:35219330-35219547(+)$1	217	142	171	9.6245
"""eeeee!!bboooooobb]eeeeeggg	chr4:147999186-147999403(-)$1	217	182	211	13.1053
####ccc[ddddoooooodddd]ccc555	chr4:99428623-99428841(+)$1	218	79	108	11.5590
ccciiiiiiiiiooooooiiiiiiiii:e	chr1:36827834-36828054(-)$1	220	57	86	13.2195
""dddd!!ddddoooooodddddddd444	chr13:49685422-49685634(-)$1	212	46	75	13.2524
ddd!!ddddcccooooooccc22dddd]d	chr2:114021224-114021442(-)$1	218	128	157	13.3695
==========rrrrrrrrr==========	chr11:101378527-101378743(-)$1	216	162	191	10.2003
ccc####eeeeeooooooeeeee4444cc	chr14:21510438-21510652(+)$1	214	135	164	13.3975
eee!!dddd!!aooooooa22dddd22ee	chr17:35651560-35651770(+)$1	210	52	81	12.2026
iiiiiiiii[cccmmmmccc]iiiiiiii	chr4:116826850-116827068(-)$1	218	179	208	9.6253
eeeeegggggggoooooogggggggffff	chr16:13782052-13782271(+)$1	219	150	179	13.0437
ggg!!ccc[ccclllcccccc22gggggg	chr11:78034614-78034829(-)$1	215	117	146	10.0065
[a[a[gggggggooooooggggggg]a]a	chr7:67130737-67130952(-)$1	215	138	167	14.4801
ccbb[bb!!cccooooooccc22bb]bb]	chr16:44157936-44158152(+)$1	216	109	138	12.7197
==============lll============	chr13:69751135-69751346(+)$1	211	27	56	11.3494
cddddcccddddoooooodddd333ccc]	chr2:180466548-180466764(-)$1	216	63	92	13.3482
ggg[ccc!!cccooooooccc22ccc333	chr16:18278465-18278684(-)$1	219	112	141	15.0193
i!!ffffff[bboooooobb]ffffff]i	chr2:127642889-127643102(-)$1	213	168	197	11.9287
dddd[ccc[cccooooooccc22ccc]dd	chr18:78018544-78018763(+)$1	219	140	169	13.8972
[ccc[a[ffffffooooooffffff]a]c	chr6:54828236-54828455(+)$1	219	85	114	11.3280
#ffffff!!cccooooooccc]ffffff3	chr5:115607734-115607948(-)$1	214	29	58	13.4090
[bbccc[eeeeeooooooeeeee]ccc44	chr7:133515389-133515607(-)$1	218	179	208	13.1772
eeffffff[cccooooooccc22ffffff	chr6:122268551-122268766(-)$1	215	159	188	12.6950
:===========oooooo===========	chr14:75175292-75175510(-)$1	218	187	216	14.0962
dddeeeee[cccooooooccc]eeeee]d	chr1:134834486-134834702(+)$1	216	174	203	13.7261
ggggggccc[a[annnnna]a]ccc333g	chr1:63627647-63627858(+)$1	211	159	188	10.1155
!!eeeee[ddddooooooddddeeeee33	chr2:169945720-169945936(-)$1	216	112	141	13.7099
!ggggggg[cccooooooccc22gggggg	chr13:63383383-63383603(+)$1	220	69	98	14.8284
dddd####ddddoooooodddd22dddd:	chr16:92078899-92079114(+)$1	215	33	62	11.6029
dddd####ddddoooooodddd333dddd	chr8:122480056-122480273(+)$1	217	94	123	12.9291
b[bb[dddd[aooooooa]ddddbb]bb]	chr4:42029287-42029503(+)$1	216	115	144	10.5109
[ccc"""eeeeeooooooeeeee333ccc	chr19:16798084-16798296(-)$1	212	131	160	13.9419
ii!!hhhhhhhhoooooohhhhhhhhiii	chr4:137105465-137105685(+)$1	220	57	86	11.6575
[bb!!==========lll==========2	chr8:88364848-88365062(+)$1	214	19	48	10.8677
::bb[ddddcccooooooccc]dddd22b	chrM:8062-8273(+)$1	211	169	198	10.7506

#otherMatches

#Seq PSSM
UGCCAGGGAUUGCAAGGACACUCUGUAUC	chr7:3158217-3158427(-)$1	210	116	145	12.5307
GGGUCCAGUGGCGGAGGAGACACGGGCCA	chr7:20282283-20282510(-)$1	227	121	150	13.3988
CUACUACUGAGUAAGUUGGCUGGUGGUAG	chr7:63181562-63181784(+)$1	222	6	35	11.4666
GACCCAGAUAAGGAUGUGCAAGGCUGGGG	chr5:32788276-32788493(+)$1	217	3	32	13.2625
UUAGAAAGUGAUUCUGUUGUCAGCUCCUG	chr13:45008526-45008736(+)$1	210	144	173	13.8013
GUAAGUGUGGGCAAUCAAGUCCAAAUACU	chr6:88456045-88456255(-)$1	210	117	146	11.7721
GGUGGCCAUCUUACAGCAGGCUGGCUCCC	chr14:122311709-122311919(+)$1	210	115	144	9.6850
GAGAUUACUCGAGAUUAAUUGAGUAUAAG	chrM:13502-13722(-)$1	220	153	182	13.7803
UUUUAUUUUUAACUUUUUUUAAAAACAAC	chr1:57445436-57445648(-)$1	212	14	43	11.6769
ACCCAGGCCAAGGAUCCAUUAGGCUUUAG	chr4:24444210-24444423(+)$1	213	77	106	12.3963
UCUAGUACCAAAGGAGAAUUUGGAGAACU	chr14:31828437-31828650(-)$1	213	81	110	13.0944
AGGCUCCCAGGAGGAUGAUCCUGCUGCCA	chr15:82685634-82685854(-)$1	220	137	166	13.4100
GCAUGGGCGCCAACAACCUGGAGCGCAUG	chr17:33786672-33786890(-)$1	218	43	72	12.5643
UAUGCUUCUAGUCAACUUGCUGGCCAUCA	chr6:122687121-122687338(-)$1	217	31	60	11.8249
ACGCAACUGUGAACAUGAUGUUCGCAAAG	chr9:110844933-110845154(-)$1	221	91	120	9.5798
GUUUUAUUUAUCUUUGCUGUUUAUGAAAC	chr3:40630742-40630958(-)$1	216	134	163	13.8823
CAUUUAAAUCAAGCAGUAUUGAAAUGGAU	chr10:62482146-62482358(-)$1	212	83	112	13.0935
CCUGUCAUCCGGCACAUCCUGGACAAUGG	chr11:115855486-115855705(+)$1	219	157	186	11.8369
ACUUUAUUAGUGCCAUUCAUCGUAAUUCU	chr5:35219330-35219547(+)$1	217	142	171	9.6245
UUUUGGUUUUGCUGUAUUGCUGGCCAUGG	chr4:147999186-147999403(-)$1	217	182	211	13.1053
AAUAUUGUAAUCAUGUGGGAUUCCAAAAA	chr4:99428623-99428841(+)$1	218	79	108	11.5590
GACCCCGGGCUGUGGCUCCAGUCCGGGCG	chr1:36827834-36828054(-)$1	220	57	86	13.2195
UAUAGAUGAAAUUGAAUUAUUUUCUAAAG	chr13:49685422-49685634(-)$1	212	46	75	13.2524
GCUCAGUCUGUGGUAAAACAUUUAGACAA	chr2:114021224-114021442(-)$1	218	128	157	13.3695
UGUAGUGCUGAACAAAUGCCAGUGUUACA	chr11:101378527-101378743(-)$1	216	162	191	10.2003
GACAAGUACUGGUGAGUUCUGGUUGAGGU	chr14:21510438-21510652(+)$1	214	135	164	13.3975
CCUGCCACCACCACGGGAGAAGGUGAGAG	chr17:35651560-35651770(+)$1	210	52	81	12.2026
GGGCUGGGGUGGGUGGACCCUUCCUGGUU	chr4:116826850-116827068(-)$1	218	179	208	9.6253
UGGGGUUUGACUUUGCUUAGUCAGAGUUU	chr16:13782052-13782271(+)$1	219	150	179	13.0437
UCAGCUGGUCACCAUGUGUCAUAUGGGUC	chr11:78034614-78034829(-)$1	215	117	146	10.0065
GAGCAGCUGGCAGAGGAGUGCCAGCAGGU	chr7:67130737-67130952(-)$1	215	138	167	14.4801
GACAAUAUCUAUCUGUAAGUAACUAAUGU	chr16:44157936-44158152(+)$1	216	109	138	12.7197
GUCGCUUUCCUGGCAGGGCUGGGAAGGUG	chr13:69751135-69751346(+)$1	211	27	56	11.3494
UUGUUCCAGCCAAAGUCCUGGCUCAUGGC	chr2:180466548-180466764(-)$1	216	63	92	13.3482
UGACUUUGAACAAGUAACUGUGAAAAAAU	chr16:18278465-18278684(-)$1	219	112	141	15.0193
UUUCAUGAUCUGCAAUGUCAUGUUGUGUA	chr2:127642889-127643102(-)$1	213	168	197	11.9287
GCUUUGAUCAUCUAUGACGAUCUAUCCAA	chr18:78018544-78018763(+)$1	219	140	169	13.8972
GAGUUCUUUCUCUCUCCACAGAGGAUGUG	chr6:54828236-54828455(+)$1	219	85	114	11.3280
GACUGCCGGAGAGCGUCAUCUGGGCAGUG	chr5:115607734-115607948(-)$1	214	29	58	13.4090
GGGCAGCAGGGCAGCGUGGCCUUCCUGGG	chr7:133515389-133515607(-)$1	218	179	208	13.1772
AUUACUUAAAGAAGAACAUCUGAUGAGUG	chr6:122268551-122268766(-)$1	215	159	188	12.6950
CAUGAAUAGACAUCUUUUUGUUUGUUUGU	chr14:75175292-75175510(-)$1	218	187	216	14.0962
GAGGAACUGGUCUCCAUCGACAAGUUUGC	chr1:134834486-134834702(+)$1	216	174	203	13.7261
CAUACCGAGUGUCUGCGUGUCUCUCUGUG	chr1:63627647-63627858(+)$1	211	159	188	10.1155
GAUGCUGUGCCCAUAAAAGGGCCGGUGGC	chr2:169945720-169945936(-)$1	216	112	141	13.7099
UCUCCAGACCAGAUCGUCUUGCUUUUGGA	chr13:63383383-63383603(+)$1	220	69	98	14.8284
UACCUUUUGGUCAAAGAAGACCCUGGUGA	chr16:92078899-92079114(+)$1	215	33	62	11.6029
AGGCUGUUUGCAGGUGAGUGUGUUUGCCU	chr8:122480056-122480273(+)$1	217	94	123	12.9291
CAGUGUCUGUGUUCAUCCCCAGAACCGCA	chr4:42029287-42029503(+)$1	216	115	144	10.5109
AGCUUACGAGCAUACAGUUGCUCUACAGU	chr19:16798084-16798296(-)$1	212	131	160	13.9419
GGUUCCUGGGCAGGCCCAUGCCCAGGUCA	chr4:137105465-137105685(+)$1	220	57	86	11.6575
GAgggggcggggccgggccggccUCGCUG	chr8:88364848-88365062(+)$1	214	19	48	10.8677
AAGUAUAGCCAUUCCACUAUGAGCUGGAG	chrM:8062-8273(+)$1	211	169	198	10.7506

#DB
(((.((((..((......)))))))))))	chr7:3158217-3158427(-)$1	1	116	145	12.5307
.(((((.(((.(......).)))))))).	chr7:20282283-20282510(-)$1	1	121	150	13.3988
((((((((.(((......)))))))))))	chr7:63181562-63181784(+)$1	1	6	35	11.4666
..(((((....(......)....))))).	chr5:32788276-32788493(+)$1	1	3	32	13.2625
((((....((((......))))....)))	chr13:45008526-45008736(+)$1	1	144	173	13.8013
((((((((((((......)))))..))))	chr6:88456045-88456255(-)$1	1	117	146	11.7721
((.(((((.(((.....))).))))))))	chr14:122311709-122311919(+)$1	1	115	144	9.6850
.....(((((((......)))))))...)	chrM:13502-13722(-)$1	1	153	182	13.7803
.....(((((((......)))))))....	chr1:57445436-57445648(-)$1	1	14	43	11.6769
((..(((((.((......)).)))))..)	chr4:24444210-24444423(+)$1	1	77	106	12.3963
((((((.(((((......)))))...)))	chr14:31828437-31828650(-)$1	1	81	110	13.0944
.(((...(((((......)))))..))).	chr15:82685634-82685854(-)$1	1	137	166	13.4100
.((((.((.(((......))).)).))))	chr17:33786672-33786890(-)$1	1	43	72	12.5643
..))).)))(((......)))((((((..	chr6:122687121-122687338(-)$1	1	31	60	11.8249
.(((.((((((((((...)))))))....	chr9:110844933-110845154(-)$1	1	91	120	9.5798
(((((((....(......)...)))))))	chr3:40630742-40630958(-)$1	1	134	163	13.8823
((((((..((((......))))..)))))	chr10:62482146-62482358(-)$1	1	83	112	13.0935
..((((((((((......)))))...)))	chr11:115855486-115855705(+)$1	1	157	186	11.8369
(..((((..(((.....))).)))).)))	chr5:35219330-35219547(+)$1	1	142	171	9.6245
...(((((..((......)).))))))))	chr4:147999186-147999403(-)$1	1	182	211	13.1053
....(((.((((......)))).)))...	chr4:99428623-99428841(+)$1	1	79	108	11.5590
)))(((((((((......))))))))).(	chr1:36827834-36828054(-)$1	1	57	86	13.2195
..((((..((((......))))))))...	chr13:49685422-49685634(-)$1	1	46	75	13.2524
(((..(((((((......)))..)))).)	chr2:114021224-114021442(-)$1	1	128	157	13.3695
((((((((((.........))))))))))	chr11:101378527-101378743(-)$1	1	162	191	10.2003
(((....(((((......)))))....))	chr14:21510438-21510652(+)$1	1	135	164	13.3975
(((..((((..(......)..))))..))	chr17:35651560-35651770(+)$1	1	52	81	12.2026
(((((((((.(((....))).))))))))	chr4:116826850-116827068(-)$1	1	179	208	9.6253
)))))(((((((......)))))))((((	chr16:13782052-13782271(+)$1	1	150	179	13.0437
(((..(((.(((...))))))..))))))	chr11:78034614-78034829(-)$1	1	117	146	10.0065
.(.(.(((((((......))))))).).)	chr7:67130737-67130952(-)$1	1	138	167	14.4801
((((.((..(((......)))..)).)).	chr16:44157936-44158152(+)$1	1	109	138	12.7197
((((((((((((((...))))))))))))	chr13:69751135-69751346(+)$1	1	27	56	11.3494
((((((((((((......))))...))).	chr2:180466548-180466764(-)$1	1	63	92	13.3482
(((.(((..(((......)))..)))...	chr16:18278465-18278684(-)$1	1	112	141	15.0193
(..((((((.((......)).)))))).)	chr2:127642889-127643102(-)$1	1	168	197	11.9287
((((.(((.(((......)))..))).))	chr18:78018544-78018763(+)$1	1	140	169	13.8972
.(((.(.((((((......)))))).).)	chr6:54828236-54828455(+)$1	1	85	114	11.3280
.((((((..(((......))).)))))).	chr5:115607734-115607948(-)$1	1	29	58	13.4090
.(((((.(((((......))))).)))..	chr7:133515389-133515607(-)$1	1	179	208	13.1772
((((((((.(((......)))..))))))	chr6:122268551-122268766(-)$1	1	159	188	12.6950
.(((((((((((......)))))))))))	chr14:75175292-75175510(-)$1	1	187	216	14.0962
((((((((.(((......))).))))).)	chr1:134834486-134834702(+)$1	1	174	203	13.7261
(((((((((.(.(.....).).)))...)	chr1:63627647-63627858(+)$1	1	159	188	10.1155
..(((((.((((......)))))))))..	chr2:169945720-169945936(-)$1	1	112	141	13.7099
.(((((((.(((......)))..))))))	chr13:63383383-63383603(+)$1	1	69	98	14.8284
((((....((((......))))..)))).	chr16:92078899-92079114(+)$1	1	33	62	11.6029
((((....((((......))))...))))	chr8:122480056-122480273(+)$1	1	94	123	12.9291
(.((.((((.(......).)))))).)).	chr4:42029287-42029503(+)$1	1	115	144	10.5109
.(((...(((((......)))))...)))	chr19:16798084-16798296(-)$1	1	131	160	13.9419
((..((((((((......)))))))))))	chr4:137105465-137105685(+)$1	1	57	86	11.6575
.((..((((((((((...)))))))))).	chr8:88364848-88365062(+)$1	1	19	48	10.8677
..((.(((((((......))).))))..)	chrM:8062-8273(+)$1	1	169	198	10.7506

#PSSM
[ : 0.15	d : 0.11	c : 0.11	g : 0.09	i : 0.09	e : 0.07	! : 0.05	" : 0.05	h : 0.03	$ : 0.03	# : 0.03	= : 0.03	: : 0.03	o : 0.01	( : 0.01	b : 0.01	
d : 0.15	c : 0.15	e : 0.13	g : 0.11	! : 0.07	i : 0.05	= : 0.05	$ : 0.03	" : 0.03	b : 0.03	h : 0.01	o : 0.01	( : 0.01	# : 0.01	a : 0.01	f : 0.01	[ : 0.01	: : 0.01	
d : 0.16	e : 0.15	c : 0.13	g : 0.11	b : 0.09	! : 0.07	= : 0.05	i : 0.03	[ : 0.03	$ : 0.03	f : 0.03	h : 0.01	" : 0.01	# : 0.01	
e : 0.18	d : 0.15	! : 0.11	c : 0.11	i : 0.05	g : 0.05	= : 0.05	b : 0.05	f : 0.05	[ : 0.03	$ : 0.03	# : 0.03	h : 0.01	a : 0.01	
e : 0.20	[ : 0.13	d : 0.11	# : 0.07	c : 0.07	! : 0.07	g : 0.05	= : 0.05	f : 0.05	h : 0.03	$ : 0.03	" : 0.03	i : 0.03	
e : 0.18	d : 0.15	g : 0.13	c : 0.13	# : 0.07	= : 0.07	f : 0.05	h : 0.03	" : 0.03	i : 0.03	[ : 0.01	] : 0.01	b : 0.01	a : 0.01	
c : 0.15	d : 0.13	e : 0.13	g : 0.11	[ : 0.07	# : 0.07	= : 0.07	f : 0.05	h : 0.03	" : 0.03	b : 0.03	! : 0.03	i : 0.03	
e : 0.20	c : 0.13	! : 0.11	d : 0.09	# : 0.09	g : 0.09	= : 0.07	f : 0.05	h : 0.03	[ : 0.03	i : 0.03	b : 0.01	
d : 0.22	[ : 0.15	e : 0.15	! : 0.11	g : 0.09	= : 0.07	c : 0.05	# : 0.03	i : 0.03	f : 0.03	h : 0.01	
c : 0.30	d : 0.15	e : 0.13	g : 0.09	[ : 0.09	= : 0.07	! : 0.05	# : 0.03	i : 0.01	f : 0.01	h : 0.01	
c : 0.30	d : 0.15	e : 0.13	g : 0.09	b : 0.07	= : 0.05	# : 0.03	a : 0.03	[ : 0.01	i : 0.01	r : 0.01	! : 0.01	f : 0.01	h : 0.01	
c : 0.30	d : 0.15	e : 0.13	g : 0.09	b : 0.07	a : 0.07	= : 0.05	i : 0.01	r : 0.01	f : 0.01	[ : 0.01	o : 0.01	h : 0.01	
o : 0.81	n : 0.03	= : 0.03	g : 0.01	r : 0.01	c : 0.01	l : 0.01	f : 0.01	a : 0.01	
o : 0.83	n : 0.05	= : 0.03	g : 0.01	r : 0.01	m : 0.01	l : 0.01	
o : 0.83	n : 0.05	l : 0.03	g : 0.01	r : 0.01	m : 0.01	= : 0.01	
o : 0.83	n : 0.05	l : 0.05	r : 0.01	m : 0.01	c : 0.01	
o : 0.83	n : 0.05	l : 0.05	r : 0.01	m : 0.01	c : 0.01	
o : 0.81	c : 0.07	l : 0.03	r : 0.01	= : 0.01	n : 0.01	a : 0.01	
c : 0.30	d : 0.15	e : 0.13	a : 0.09	g : 0.09	b : 0.07	= : 0.05	i : 0.01	r : 0.01	o : 0.01	] : 0.01	h : 0.01	
c : 0.30	d : 0.16	e : 0.13	g : 0.09	b : 0.07	= : 0.07	] : 0.03	4 : 0.01	3 : 0.01	i : 0.01	2 : 0.01	f : 0.01	h : 0.01	
c : 0.26	d : 0.18	e : 0.13	] : 0.11	g : 0.09	= : 0.07	4 : 0.01	3 : 0.01	i : 0.01	2 : 0.01	f : 0.01	a : 0.01	h : 0.01	
d : 0.22	e : 0.18	2 : 0.13	g : 0.09	] : 0.09	= : 0.07	f : 0.05	h : 0.03	i : 0.03	c : 0.01	4 : 0.01	3 : 0.01	
e : 0.22	2 : 0.16	d : 0.11	g : 0.11	f : 0.07	= : 0.07	c : 0.03	h : 0.03	4 : 0.03	i : 0.03	3 : 0.03	b : 0.01	] : 0.01	
g : 0.15	e : 0.13	d : 0.11	3 : 0.09	f : 0.09	2 : 0.07	c : 0.07	= : 0.07	b : 0.05	h : 0.03	4 : 0.03	i : 0.03	] : 0.01	
g : 0.16	e : 0.15	d : 0.11	3 : 0.09	f : 0.09	c : 0.09	= : 0.07	h : 0.03	4 : 0.03	2 : 0.03	i : 0.03	b : 0.03	] : 0.01	
e : 0.15	d : 0.13	c : 0.11	3 : 0.09	f : 0.09	] : 0.09	g : 0.07	= : 0.07	4 : 0.05	h : 0.03	i : 0.03	6 : 0.01	2 : 0.01	
e : 0.13	c : 0.11	g : 0.09	d : 0.09	f : 0.09	i : 0.07	= : 0.07	3 : 0.05	2 : 0.05	4 : 0.05	a : 0.03	b : 0.03	h : 0.01	6 : 0.01	5 : 0.01	] : 0.01	
e : 0.11	c : 0.11	g : 0.09	d : 0.09	] : 0.09	3 : 0.07	= : 0.07	i : 0.05	4 : 0.05	f : 0.05	2 : 0.03	b : 0.03	h : 0.01	6 : 0.01	" : 0.01	5 : 0.01	: : 0.01	
g : 0.11	d : 0.11	e : 0.11	] : 0.09	i : 0.09	c : 0.09	4 : 0.05	= : 0.05	3 : 0.05	2 : 0.03	f : 0.03	h : 0.01	6 : 0.01	" : 0.01	5 : 0.01	a : 0.01	: : 0.01	b : 0.01	

#score	657.7534493196378
#seq	53
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_CDS_m2_run1.txt

#BEAR
bb[eeeee[ccc"""cccmmmmccc4444ccceeeeebb2	chrX:148311316-148311550(+)$1	234	52	92	11.9151
iiiiiii[eeeee[cccooooooccc]eeeee22iiiiii	chr18:35064595-35064824(-)$1	229	26	66	17.3311
gggggggdddd[eeeeeooooooeeeeeddddeeeeelll	chr14:67638467-67638694(-)$1	227	36	76	13.2690
cccccc!!ccc!!ddddoooooodddd22ccc]ccc]ccc	chr3:121160031-121160256(+)$1	225	65	105	16.5466
#ccc!!eeeee"""ddddmmmmdddd4444eeeee22ccc	chr11:79845353-79845588(+)$1	235	119	159	12.5887
c!!dddd"""ccceeeeellleeeee333ccc333ddddc	chr3:16105059-16105304(+)$1	245	134	174	13.0836
=====[ggggggg!!bboooooobb55555ggggggg===	chr15:38421909-38422134(-)$1	225	73	113	13.5013
e####ccc$$$$$a!!bboooooobb22accc22eeeee6	chrX:148462268-148462514(+)$1	246	81	121	13.5486
ee[a!!dddd!!eeeeeooooooeeeee]dddd333a]ee	chrX:91518480-91518724(+)$1	244	69	109	15.5255
ffffff!!ggggggg[aooooooa]ggggggg22ffffff	chr15:90825836-90826087(-)$1	251	169	209	14.5444
:eeeee"""bb[eeeeeooooooeeeee]bb333eeeee:	chr19:29884787-29885010(-)$1	223	182	222	13.2502
fffff!!dddd[eeeeeooooooeeeeeddddffffff]a	chr1:58596890-58597117(-)$1	227	137	177	13.8405
""ccc####dddd[cccooooooccc22dddd4444cccf	chr2:23047922-23048145(+)$1	223	129	169	17.6134
=======####cccbbqqqqqqqqbb333ccc22======	chr2:91002538-91002766(-)$1	228	66	106	12.2097
eee!!ggggggg[ccc[annnnnacccgggggggeeeee4	chr7:125354237-125354468(-)$1	231	113	153	12.4879
ddd!!eeeee[a"""bboooooobb4444a]eeeee]ddd	chr12:58340231-58340458(+)$1	227	119	159	15.7119
bb"""ccc[ccc!!cccnnnnnccc22ccc]cccbbeeee	chr13:31899890-31900118(+)$1	228	99	139	11.9476
+ggggggg[bb[eeeeeooooooeeeee]bb]gggggggd	chr6:137688190-137688414(+)$1	224	75	115	13.9026
d####bb!!dddd!!ccclllccc4444dddd22bbdddd	chr11:98082326-98082567(+)$1	241	81	121	12.2301
fffff[dddd"""ddddoooooodddd]dddd]ffffff4	chr8:88299939-88300168(-)$1	229	140	180	14.5030
[ffffff[bb[bbddddoooooodddd>>>>>>>>>>>>b	chr2:153061619-153061847(-)$1	228	60	100	11.9990
eee[ccceeeee"""bboooooobb]eeeee22ccceeee	chr14:46249289-46249522(-)$1	233	31	71	14.7390
ddd[ggggggg####bboooooobb4444ggggggg22dd	chr11:83211245-83211472(+)$1	227	155	195	16.0656
diiiiiiiii####cccrrrrrrrrrccciiiiiiiii22	chr10:7393365-7393590(+)$1	225	172	212	12.2041
!ggggggg[ccc!!cccooooooccc333ccc333ggggg	chr3:29878922-29879152(-)$1	230	173	213	19.3530
ggggg"""eeeee"""cccmmmmccc]eeeee333ggggg	chr11:109523489-109523725(+)$1	236	153	193	13.6211
iiiiii"""ccc!!cccooooooccc]ccc4444iiiiii	chr4:115751931-115752162(+)$1	231	47	87	18.4040
gg!!ggggggg[a!!cccnnnnnccc22a]ggggggg999	chr11:50197239-50197467(+)$1	228	142	182	12.1453
dd[iiiiiiiiia[cccmmmmccc]a]iiiiiiiii]ddd	chr11:29109285-29109512(+)$1	227	157	197	12.0212
eee:ccc[eeeee!!bboooooobbeeeee]ccceeeeem	chr18:35091166-35091408(-)$1	242	167	207	13.3323
eeeee============oooooo============333ee	chr2:23001549-23001773(-)$1	224	115	155	16.4180
ee!!ccc[eeeee[cccooooooccc333eeeee22ccc]	chr17:80249472-80249699(-)$1	227	161	201	17.2281
[iiiiiiiii!!cccqqqqqqqqccc333iiiiiiiii]b	chr10:20052127-20052356(+)$1	229	83	123	12.0608
sssffffffdddd!!bboooooobb333dddd========	chr9:57378013-57378243(+)$1	230	42	82	14.3928
$ccc[ggggggg!!ddddmmmmdddd22ggggggg22ccc	chr11:121191400-121191624(-)$1	224	61	101	12.3610
dddddd"""eeeee[bboooooobb]eeeeedddd]dddd	chr9:54730045-54730287(+)$1	242	185	225	13.8091
cc[dddd[ccc####cccmmmmccc4444ccc333dddd]	chr1:129699461-129699710(+)$1	249	203	243	13.7978
dd!!bb[ffffffddddoooooodddd333ffffff333b	chrX:91497719-91497951(+)$1	232	45	85	13.8000
!iiiiiiiii"""eeeeeooooooeeeee666666iiiii	chr1:177822032-177822254(+)$1	222	107	147	12.8407
!bb####eeeee[ddddoooooodddd]eeeee4444bb2	chrX:91518596-91518846(+)$1	250	14	54	15.2943
!!dddd[dddd[ccc[aooooooaccc]dddddddd]bb]	chr3:88787868-88788091(+)$1	223	66	106	14.1645
fffff"""dddd[a[bboooooobb333a]dddd4444ff	chr6:30400452-30400679(+)$1	227	144	184	16.3827
ffff[dddd[bb!!cccooooooccc22bb333dddd333	chr3:103152180-103152403(+)$1	223	77	117	15.2491
bb[ccc####ddddacccnnnnnccc]a]ddddccc]bb]	chr17:33803455-33803688(-)$1	233	50	90	12.3558
#ccc####dddd!!ddddaooooooa]dddd]dddd]ccc	chrX:39606870-39607101(+)$1	231	62	102	13.8181
hhhhhh####ccc[ddddmmmmdddd333ccc4444hhhh	chr10:62479952-62480180(-)$1	228	45	85	12.2909
==========[bb[cccooooooccc22bb]=========	chr9:75245455-75245688(-)$1	233	26	66	17.1679
iiiiii"""ccc[cccbboooooobb]ccc]ccc22iiii	chr3:102854124-102854362(+)$1	238	67	107	15.3150
c!!dddd"""ccceeeeellleeeee333ccc333ddddc	chr3:16105112-16105347(+)$1	235	81	121	13.0836
!!a[bb!!dddd[ddddoooooodddddddd]bb]a22cc	chr11:4982270-4982508(-)$1	238	9	49	14.3175
ffffff"""eeeeecccooooooccc]eeeee22ffffff	chr12:101444299-101444540(+)$1	241	139	179	15.9476
eee"""eeeeecccrrrrrrrrrccc22eeeee333eeee	chr6:39627275-39627511(-)$1	236	165	205	12.3371
!!eeeee!!bb!!a[cccnnnnnccc]a22bb22eeeee2	chr19:4787675-4787896(-)$1	221	19	59	12.4954
ccc"""eeeee!!ddddoooooodddd]eeeee4444ccc	chr17:80601936-80602171(-)$1	235	158	198	16.2561
!ffffff[abb[eeeeeooooooeeeee]bb4444a]fff	chr12:35804338-35804576(+)$1	238	75	115	14.7046
""bb####eeeee!!bboooooobb22eeeee>>>>>>>>	chr2:53061904-53062130(+)$1	226	163	203	14.5982
[===========[ddddnnnnndddd===========]dd	chr15:36184124-36184363(-)$1	239	141	181	13.6963
Hffffff[ddddeeeeeooooooeeeee333dddd]ffff	chr10:7357829-7358064(-)$1	235	29	69	13.3493

#otherMatches

#Seq PSSM
UGUGAAUUUGGUCAAGCGGACAUGCAGAAACUAGUUCCAA	chrX:148311316-148311550(+)$1	234	52	92	11.9151
AGUAGGGUGGGCUUCUCCUGUAAGAGCAGCCCCUUUCUGC	chr18:35064595-35064824(-)$1	229	26	66	17.3311
UAUUUUCUCUGCAGGUACAUGAAUACCUCAGAAGUAAACU	chr14:67638467-67638694(-)$1	227	36	76	13.2690
CCAACAAAGUUGCUUCCCAGAAAGGAAUGAGCGUGUAUGG	chr3:121160031-121160256(+)$1	225	65	105	16.5466
UCUUAUUAGCAUAAUGUCAAUAGAUAAAGCUGUUACCAAG	chr11:79845353-79845588(+)$1	235	119	159	12.5887
GAAGUUAAAUGGAUCUUUGUCAAAGAUGUUCCCAAUAACC	chr3:16105059-16105304(+)$1	245	134	174	13.0836
GUUUAUGGUUCUUUUGCGAGUAAGCUUUCUGAGGACUUAA	chr15:38421909-38422134(-)$1	225	73	113	13.5013
AGAAACAUUAUAAGAAACGUAAAGGUGACAUGGAUGAGCU	chrX:148462268-148462514(+)$1	246	81	121	13.5486
CAGUGGACCAUCUUGGCCUCCAUGCCAAUUGGUAGAAGUG	chrX:91518480-91518724(+)$1	244	69	109	15.5255
GGAGGUGACUGUGUUGUUAAAACAGAGCGUAGGGGCUUUC	chr15:90825836-90826087(-)$1	251	169	209	14.5444
GCUACUCCCACUAAUUGUAAAUCUAAUUUGUUCAAGUAGG	chr19:29884787-29885010(-)$1	223	182	222	13.2502
CAUGUAAGUAGGAAGGAGAGGAAUUCUUCUGCACAUGGGA	chr1:58596890-58597117(-)$1	227	137	177	13.8405
CUAGAGUUUUCCAAGGAUAAAAUUCUAAUGGGUAUGUCUU	chr2:23047922-23048145(+)$1	223	129	169	17.6134
GGGUGGUAUGGCCAGCAUCUUUGGGCUUUUGGAGAUUGCC	chr2:91002538-91002766(-)$1	228	66	106	12.2097
GUCGAAUCUUCUUCGGAGGAUCACCCGGGAAGAUGACAGA	chr7:125354237-125354468(-)$1	231	113	153	12.4879
CAGCCAUGUUCCUUUGUAAUAUAACUUCUGAAGCAUUUUG	chr12:58340231-58340458(+)$1	227	119	159	15.7119
GCCAGGGCUUCAGCGUGGACAACAUCAUGACGUCGCUGCG	chr13:31899890-31900118(+)$1	228	99	139	11.9476
UUGUUUUCAGGAUAGCAAUUACCUGCUAACUGGGGGACAG	chr6:137688190-137688414(+)$1	224	75	115	13.9026
UUGGGAUUAUUGGAGAGGGGACCUAUGGCCAAGUAUAUAA	chr11:98082326-98082567(+)$1	241	81	121	12.2301
UUUUGUCUCUUAAUGCUCUCACAAGUACAGAGUCAAAGCA	chr8:88299939-88300168(-)$1	229	140	180	14.5030
AUUUUUCACCAGCGUCCCUCCCUGGAUUCAAGAUGCAAAG	chr2:153061619-153061847(-)$1	228	60	100	11.9990
CCUGCUUGGGGAAUAGCUAGUGUGCCUCCCUGUGAGAGGC	chr14:46249289-46249522(-)$1	233	31	71	14.7390
CCAAUUAUACGGUAAGGCCUUUCCCAGAAUGUGUGAGAUG	chr11:83211245-83211472(+)$1	227	155	195	16.0656
UAUUAUGAUAAAAAACUUGUUUAAUUAGUUAUUGUAGUCA	chr10:7393365-7393590(+)$1	225	172	212	12.2041
UGGUGGGGCUGCAAGACAAAAAAGUUGGAGCGUUACCUUA	chr3:29878922-29879152(-)$1	230	173	213	19.3530
GUUAAUGAUAGGAAAAUAUGUUGAUAAUCUUGAUUUUAAC	chr11:109523489-109523725(+)$1	236	153	193	13.6211
UUUUGGUUUUUGUAGCCCUCCCAGGCCCAAUACUUCAAAG	chr4:115751931-115752162(+)$1	231	47	87	18.4040
UGGUGCUUAUGGUAGCCAAAUGAUGGGAGGCAUGGGCUUG	chr11:50197239-50197467(+)$1	228	142	182	12.1453
UUUUAAAUUCAGCUGUUAUUGAAUUGUUUGAAUUUAUAAG	chr11:29109285-29109512(+)$1	227	157	197	12.0212
GCUUGGAGGCGGCCCGCGGGUGAGCGCUGCGUCCGGCACC	chr18:35091166-35091408(-)$1	242	167	207	13.3323
AUAUAUAUGGUUAUUUUGAUGAAGAGAUGGCUAUAAAAUA	chr2:23001549-23001773(-)$1	224	115	155	16.4180
UGACCAGGUGUCUCAUCAUGCCCGAUUAAAGACAGACUGA	chr17:80249472-80249699(-)$1	227	161	201	17.2281
AUUUGUCUUUUACACGGCUUAUGGUGGAUGAGGACAAAAA	chr10:20052127-20052356(+)$1	229	83	123	12.0608
ACACUUGUUGGCUAUGAUCUGGUUCCUGAGCCCAAAAUCA	chr9:57378013-57378243(+)$1	230	42	82	14.3928
UUCACUGUUUUUCAAAGGGGACCCUUAUAAGAAUAUUUGA	chr11:121191400-121191624(-)$1	224	61	101	12.3610
GGACCACUCUUUACAGAUUGACUUCAGUAAAUGGUACUGC	chr9:54730045-54730287(+)$1	242	185	225	13.8091
CCACCACAGCAGCCACAAGUAUUUGCACAUGCACAGUGGA	chr1:129699461-129699710(+)$1	249	203	243	13.7978
CAGGGGACGUGGAAGGAUUCUGUUCCUCCAUCCAUGACAC	chrX:91497719-91497951(+)$1	232	45	85	13.8000
GGGGAUGUAUUCACGGAGGAGAAGUUCCGGUACAUGUGCA	chr1:177822032-177822254(+)$1	222	107	147	12.8407
ACAAACAGAUAAUGGUCCUUGGAGGCCUUUGUUAUAAUGG	chrX:91518596-91518846(+)$1	250	14	54	15.2943
CAGCCUUGCUGUGCUUGAACAAACAGCUCAGCAGGCAGCU	chr3:88787868-88788091(+)$1	223	66	106	14.1645
GGAGAAGCUGCUCGCGGCCUUCCCCAACCUAGCAAACCUC	chr6:30400452-30400679(+)$1	227	144	184	16.3827
UCUGCUUUACCUCUAUUGUCACGAAUUAAGUAUUGAAUUC	chr3:103152180-103152403(+)$1	223	77	117	15.2491
UUUUUCAGGAUCCUGAUGGUGAACAUGCAAGGAGAGCAAU	chr17:33803455-33803688(-)$1	233	50	90	12.3558
UAGUUUAUACUCCUGAUUCUUCAUUGCAGUCUGAGUUGCU	chrX:39606870-39607101(+)$1	231	62	102	13.8181
GAGAUUUAUAUGGAUACACUUAUGUAAACCCACAAUGGUU	chr10:62479952-62480180(-)$1	228	45	85	12.2909
CGAUGUGGGCUCUCUCACGGAGCUGAAUAGCGUCUACAUU	chr9:75245455-75245688(-)$1	233	26	66	17.1679
UACUAACUAUCAUCCUCAUCGUUUUGUAGGUUGAAUUUAG	chr3:102854124-102854362(+)$1	238	67	107	15.3150
GAAGUUAAAUGGAUCUUUGUCAAAGAUGUUCCCAAUAACC	chr3:16105112-16105347(+)$1	235	81	121	13.0836
AAAGGGUGUCAGGCAUUGGUGUGAAUGCUGGUCCGUGGCU	chr11:4982270-4982508(-)$1	238	9	49	14.3175
UGAAGGUAAAGGCUAAGUGUAGUCUUCAGCCUGGUUUUCA	chr12:101444299-101444540(+)$1	241	139	179	15.9476
UUUCUUUGUGUUGAACAUCAUCAUCACUGCAUAUUCAGAG	chr6:39627275-39627511(-)$1	236	165	205	12.3371
AAUAUGGAGCAGUGCGUACGCCUUACACCAUGAGUUAUGG	chr19:4787675-4787896(-)$1	221	19	59	12.4954
GAUUUAGUGCUCUUAUAGUUAAUUAUAUAGCACCAAUAUC	chr17:80601936-80602171(-)$1	235	158	198	16.2561
ACUAUGACCCAUAUGCUGUGGCAGGCGUUUGUAAUGAUCA	chr12:35804338-35804576(+)$1	238	75	115	14.7046
UUCACCUGCUAGGUUCAAGUAAGUGUUUCUAGGUUUAUUU	chr2:53061904-53062130(+)$1	226	163	203	14.5982
GUUGCAAUCAUAUGACAUGUGCUGUCUGUGGUUGUGAGUU	chr15:36184124-36184363(-)$1	239	141	181	13.6963
UUUUUCUCCUAGUUAAUAGACCAGUUAAAGCCUGGUGGAA	chr10:7357829-7358064(-)$1	235	29	69	13.3493

#DB
((.(((((.(((...(((....)))....)))))))))).	chrX:148311316-148311550(+)$1	1	52	92	11.9151
(((((((.(((((.(((......))).)))))..))))))	chr18:35064595-35064824(-)$1	1	26	66	17.3311
)))))))((((.(((((......)))))))))(((((...	chr14:67638467-67638694(-)$1	1	36	76	13.2690
((((((..(((..((((......))))..))).))).)))	chr3:121160031-121160256(+)$1	1	65	105	16.5466
.(((..(((((...((((....))))....)))))..)))	chr11:79845353-79845588(+)$1	1	119	159	12.5887
(..((((...((((((((...)))))...)))...)))))	chr3:16105059-16105304(+)$1	1	134	174	13.0836
(((((.(((((((..((......)).....))))))))))	chr15:38421909-38422134(-)$1	1	73	113	13.5013
(....(((.....(..((......))..))))..))))).	chrX:148462268-148462514(+)$1	1	81	121	13.5486
((.(..((((..(((((......))))).))))...).))	chrX:91518480-91518724(+)$1	1	69	109	15.5255
((((((..(((((((.(......).)))))))..))))))	chr15:90825836-90826087(-)$1	1	169	209	14.5444
.(((((...((.(((((......))))).))...))))).	chr19:29884787-29885010(-)$1	1	182	222	13.2502
(((((..((((.(((((......))))))))))))))).)	chr1:58596890-58597117(-)$1	1	137	177	13.8405
..(((....((((.(((......)))..))))....))))	chr2:23047922-23048145(+)$1	1	129	169	17.6134
(((((((....(((((........))...)))..))))))	chr2:91002538-91002766(-)$1	1	66	106	12.2097
(((..(((((((.(((.(.....)))))))))))))))).	chr7:125354237-125354468(-)$1	1	113	153	12.4879
(((..(((((.(...((......))....).))))).)))	chr12:58340231-58340458(+)$1	1	119	159	15.7119
((...(((.(((..(((.....)))..))).)))))))))	chr13:31899890-31900118(+)$1	1	99	139	11.9476
.(((((((.((.(((((......))))).)).))))))))	chr6:137688190-137688414(+)$1	1	75	115	13.9026
(....((..((((..(((...)))....))))..))))))	chr11:98082326-98082567(+)$1	1	81	121	12.2301
(((((.((((...((((......)))).)))).)))))).	chr8:88299939-88300168(-)$1	1	140	180	14.5030
.((((((.((.((((((......))))............)	chr2:153061619-153061847(-)$1	1	60	100	11.9990
(((.((((((((...((......)).)))))..)))))))	chr14:46249289-46249522(-)$1	1	31	71	14.7390
(((.(((((((....((......))....)))))))..))	chr11:83211245-83211472(+)$1	1	155	195	16.0656
((((((((((....(((.........))))))))))))..	chr10:7393365-7393590(+)$1	1	172	212	12.2041
.(((((((.(((..(((......)))...)))...)))))	chr3:29878922-29879152(-)$1	1	173	213	19.3530
(((((...(((((...(((....))).)))))...)))))	chr11:109523489-109523725(+)$1	1	153	193	13.6211
((((((...(((..(((......))).)))....))))))	chr4:115751931-115752162(+)$1	1	47	87	18.4040
((..(((((((.(..(((.....)))..).)))))))...	chr11:50197239-50197467(+)$1	1	142	182	12.1453
((.((((((((((.(((....))).).))))))))).)))	chr11:29109285-29109512(+)$1	1	157	197	12.0212
))).(((.(((((..((......))))))).)))(((((.	chr18:35091166-35091408(-)$1	1	167	207	13.3323
(((((((((((((((((......))))))))))))...))	chr2:23001549-23001773(-)$1	1	115	155	16.4180
((..(((.(((((.(((......)))...)))))..))).	chr17:80249472-80249699(-)$1	1	161	201	17.2281
.(((((((((..(((........)))...))))))))).)	chr10:20052127-20052356(+)$1	1	83	123	12.0608
...))))))((((..((......))...))))((((((((	chr9:57378013-57378243(+)$1	1	42	82	14.3928
.(((.(((((((..((((....))))..)))))))..)))	chr11:121191400-121191624(-)$1	1	61	101	12.3610
((((((...(((((.((......)).))))))))).))))	chr9:54730045-54730287(+)$1	1	185	225	13.8091
((.((((.(((....(((....)))....)))...)))).	chr1:129699461-129699710(+)$1	1	203	243	13.7978
((..((.((((((((((......))))...))))))...)	chrX:91497719-91497951(+)$1	1	45	85	13.8000
.(((((((((...(((((......)))))......)))))	chr1:177822032-177822254(+)$1	1	107	147	12.8407
.((....(((((.((((......)))).)))))....)).	chrX:91518596-91518846(+)$1	1	14	54	15.2943
..((((.((((.(((.(......)))).)))))))).)).	chr3:88787868-88788091(+)$1	1	66	106	14.1645
(((((...((((.(.((......))...).))))....))	chr6:30400452-30400679(+)$1	1	144	184	16.3827
((((.((((.((..(((......)))..))...))))...	chr3:103152180-103152403(+)$1	1	77	117	15.2491
((.(((....((((((((.....))).).))))))).)).	chr17:33803455-33803688(-)$1	1	50	90	12.3558
.(((....((((..(((((......).)))).)))).)))	chrX:39606870-39607101(+)$1	1	62	102	13.8181
((((((....(((.((((....))))...)))....))))	chr10:62479952-62480180(-)$1	1	45	85	12.2909
((((((((((.((.(((......)))..)).)))))))))	chr9:75245455-75245688(-)$1	1	26	66	17.1679
((((((...(((.(((((......)).))).)))..))))	chr3:102854124-102854362(+)$1	1	67	107	15.3150
(..((((...((((((((...)))))...)))...)))))	chr3:16105112-16105347(+)$1	1	81	121	13.0836
..(.((..((((.((((......)))))))).)).)..))	chr11:4982270-4982508(-)$1	1	9	49	14.3175
((((((...((((((((......))).)))))..))))))	chr12:101444299-101444540(+)$1	1	139	179	15.9476
(((...((((((((.........)))..)))))...))))	chr6:39627275-39627511(-)$1	1	165	205	12.3371
..(((((..((..(.(((.....))).)..))..))))).	chr19:4787675-4787896(-)$1	1	19	59	12.4954
(((...(((((..((((......)))).)))))....)))	chr17:80601936-80602171(-)$1	1	158	198	16.2561
.((((((.(((.(((((......))))).))....).)))	chr12:35804338-35804576(+)$1	1	75	115	14.7046
..((....(((((..((......))..)))))........	chr2:53061904-53062130(+)$1	1	163	203	14.5982
.(((((((((((.((((.....))))))))))))))).))	chr15:36184124-36184363(-)$1	1	141	181	13.6963
(((((((.(((((((((......)))))...)))).))))	chr10:7357829-7358064(-)$1	1	29	69	13.3493

#PSSM
e : 0.13	d : 0.12	! : 0.12	f : 0.10	c : 0.08	b : 0.05	i : 0.05	g : 0.05	= : 0.05	[ : 0.05	# : 0.03	" : 0.03	: : 0.01	+ : 0.01	s : 0.01	$ : 0.01	h : 0.01	H : 0.01	
f : 0.15	e : 0.13	i : 0.10	c : 0.10	g : 0.08	! : 0.08	d : 0.08	b : 0.06	= : 0.06	# : 0.03	" : 0.03	s : 0.01	h : 0.01	
f : 0.15	e : 0.12	i : 0.10	c : 0.10	[ : 0.08	! : 0.08	g : 0.06	= : 0.06	d : 0.06	# : 0.03	b : 0.03	" : 0.01	s : 0.01	h : 0.01	a : 0.01	
f : 0.17	i : 0.12	c : 0.10	d : 0.08	! : 0.08	e : 0.06	g : 0.06	= : 0.06	# : 0.05	" : 0.05	[ : 0.05	a : 0.01	: : 0.01	h : 0.01	b : 0.01	
f : 0.15	i : 0.12	g : 0.10	c : 0.10	d : 0.08	# : 0.08	e : 0.06	! : 0.06	= : 0.06	" : 0.05	[ : 0.03	b : 0.03	h : 0.01	
i : 0.12	g : 0.12	c : 0.12	d : 0.10	f : 0.10	e : 0.06	# : 0.06	= : 0.06	" : 0.06	! : 0.05	b : 0.05	[ : 0.03	h : 0.01	
g : 0.13	" : 0.12	e : 0.10	d : 0.10	# : 0.10	i : 0.08	c : 0.08	! : 0.06	= : 0.06	f : 0.06	[ : 0.03	b : 0.01	
" : 0.15	e : 0.12	[ : 0.12	g : 0.12	d : 0.10	# : 0.10	! : 0.08	i : 0.06	= : 0.05	c : 0.03	f : 0.03	
e : 0.18	d : 0.17	" : 0.12	g : 0.10	[ : 0.06	# : 0.06	i : 0.06	= : 0.05	c : 0.03	! : 0.03	f : 0.03	$ : 0.01	b : 0.01	a : 0.01	
e : 0.22	d : 0.20	c : 0.12	g : 0.10	b : 0.08	i : 0.06	# : 0.05	= : 0.05	" : 0.03	$ : 0.01	f : 0.01	[ : 0.01	
e : 0.20	d : 0.18	c : 0.17	g : 0.10	b : 0.08	[ : 0.05	! : 0.03	# : 0.03	" : 0.03	= : 0.03	$ : 0.01	i : 0.01	f : 0.01	
c : 0.17	e : 0.15	d : 0.13	[ : 0.12	! : 0.08	g : 0.06	" : 0.05	b : 0.05	# : 0.05	= : 0.03	$ : 0.01	a : 0.01	i : 0.01	f : 0.01	
e : 0.24	! : 0.15	c : 0.12	" : 0.10	[ : 0.10	d : 0.06	# : 0.05	g : 0.03	b : 0.03	a : 0.03	$ : 0.01	= : 0.01	f : 0.01	
e : 0.20	! : 0.20	d : 0.15	[ : 0.10	c : 0.10	" : 0.08	a : 0.05	# : 0.05	g : 0.01	= : 0.01	
c : 0.25	d : 0.20	e : 0.17	! : 0.12	" : 0.06	[ : 0.05	# : 0.03	g : 0.01	b : 0.01	= : 0.01	a : 0.01	r : 0.01	
c : 0.32	d : 0.20	e : 0.17	b : 0.17	[ : 0.03	! : 0.01	" : 0.01	= : 0.01	q : 0.01	r : 0.01	
c : 0.31	d : 0.20	b : 0.18	e : 0.17	a : 0.03	q : 0.03	[ : 0.01	= : 0.01	r : 0.01	
o : 0.58	c : 0.12	d : 0.06	e : 0.05	b : 0.03	q : 0.03	n : 0.03	r : 0.03	a : 0.01	m : 0.01	
o : 0.63	m : 0.10	n : 0.10	l : 0.05	q : 0.03	r : 0.03	c : 0.01	a : 0.01	
o : 0.65	m : 0.12	n : 0.10	l : 0.05	q : 0.03	r : 0.03	
o : 0.65	m : 0.12	n : 0.10	l : 0.05	q : 0.03	r : 0.03	
o : 0.65	m : 0.10	n : 0.10	e : 0.03	q : 0.03	c : 0.03	r : 0.03	
o : 0.65	c : 0.08	d : 0.06	n : 0.06	e : 0.03	q : 0.03	r : 0.03	m : 0.01	
c : 0.32	d : 0.18	e : 0.15	b : 0.15	o : 0.06	a : 0.05	q : 0.01	r : 0.01	= : 0.01	
c : 0.32	b : 0.20	d : 0.18	e : 0.17	] : 0.03	4 : 0.01	r : 0.01	= : 0.01	o : 0.01	
c : 0.27	e : 0.18	d : 0.18	4 : 0.08	b : 0.05	2 : 0.03	] : 0.03	a : 0.03	3 : 0.03	5 : 0.01	g : 0.01	r : 0.01	= : 0.01	
e : 0.18	] : 0.15	3 : 0.15	2 : 0.15	d : 0.12	4 : 0.10	c : 0.05	= : 0.03	5 : 0.01	g : 0.01	
e : 0.25	3 : 0.17	2 : 0.13	4 : 0.10	c : 0.06	] : 0.06	g : 0.03	= : 0.03	a : 0.03	d : 0.03	5 : 0.01	> : 0.01	i : 0.01	
e : 0.18	d : 0.15	3 : 0.15	4 : 0.08	] : 0.08	c : 0.06	a : 0.05	g : 0.05	2 : 0.03	= : 0.03	b : 0.03	5 : 0.01	> : 0.01	i : 0.01	
c : 0.20	e : 0.18	d : 0.18	b : 0.08	g : 0.06	i : 0.05	] : 0.03	= : 0.03	3 : 0.03	4 : 0.01	5 : 0.01	a : 0.01	> : 0.01	6 : 0.01	2 : 0.01	
d : 0.20	e : 0.18	c : 0.15	g : 0.10	] : 0.08	b : 0.06	i : 0.05	= : 0.03	3 : 0.03	> : 0.01	4 : 0.01	f : 0.01	6 : 0.01	
c : 0.20	d : 0.20	e : 0.17	g : 0.10	] : 0.05	i : 0.05	= : 0.05	3 : 0.03	4 : 0.03	> : 0.01	2 : 0.01	f : 0.01	6 : 0.01	b : 0.01	
e : 0.13	2 : 0.13	3 : 0.12	d : 0.12	g : 0.10	4 : 0.06	= : 0.06	c : 0.05	i : 0.05	] : 0.03	f : 0.03	> : 0.03	6 : 0.01	b : 0.01	
3 : 0.13	2 : 0.12	c : 0.10	g : 0.10	4 : 0.10	d : 0.10	e : 0.08	= : 0.06	f : 0.05	i : 0.05	> : 0.03	6 : 0.01	b : 0.01	
e : 0.15	3 : 0.12	4 : 0.10	i : 0.08	g : 0.08	f : 0.08	= : 0.08	d : 0.08	c : 0.05	b : 0.03	> : 0.03	2 : 0.03	6 : 0.01	] : 0.01	
e : 0.13	i : 0.10	d : 0.10	g : 0.10	f : 0.08	4 : 0.08	2 : 0.06	= : 0.06	c : 0.05	3 : 0.05	b : 0.03	> : 0.03	] : 0.03	a : 0.03	
e : 0.17	] : 0.12	i : 0.10	d : 0.10	g : 0.08	f : 0.08	2 : 0.06	= : 0.06	4 : 0.05	c : 0.03	> : 0.03	3 : 0.03	a : 0.01	h : 0.01	
e : 0.13	c : 0.12	d : 0.12	i : 0.10	f : 0.10	b : 0.06	= : 0.06	g : 0.05	3 : 0.05	] : 0.03	> : 0.03	2 : 0.03	l : 0.01	9 : 0.01	4 : 0.01	h : 0.01	
e : 0.17	d : 0.15	c : 0.13	f : 0.10	b : 0.06	i : 0.06	= : 0.06	g : 0.05	] : 0.03	> : 0.03	3 : 0.03	l : 0.01	2 : 0.01	9 : 0.01	h : 0.01	
c : 0.13	d : 0.12	f : 0.10	e : 0.08	2 : 0.06	i : 0.06	= : 0.06	] : 0.06	b : 0.05	4 : 0.03	g : 0.03	l : 0.01	6 : 0.01	: : 0.01	a : 0.01	9 : 0.01	m : 0.01	3 : 0.01	h : 0.01	> : 0.01	

#score	822.9705885612346
#seq	58
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_UTR_m2_run2.txt

#BEAR
eee"""ggggggg[bboooooobb]ggggggg4444	chr1:63098929-63099187(-)$1	258	154	190	13.5771
iii====================::===========	chr2:84528897-84529127(-)$1	230	144	180	14.9451
=============eeeeennnnneeeee4444====	chr13:54780684-54780915(-)$1	231	171	207	13.4295
[eeeee"""dddd[aooooooadddd22eeeee]gg	chr8:4289417-4289647(-)$1	230	97	133	10.8891
d[ggggggg####eeeeellleeeee333ggggggg	chr3:57645834-57646062(-)$1	228	70	106	13.2602
hhhhh####iiiiiiiiiooooooiiiiiiiii555	chrX:35966352-35966580(+)$1	228	146	182	12.5348
e!!ccc[ffffff!!cccmmmmccc22ffffff333	chrX:12869129-12869357(+)$1	228	125	161	12.9995
##=========="""bbnnnnnbb333=========	chr9:51923067-51923302(-)$1	235	74	110	17.3340
G:::ccc[==========mmmm==========]ccc	chr13:75908606-75908839(+)$1	233	188	224	13.1854
fffeeeee[ccc"""cccmmmmccc333ccc333ee	chr11:86520147-86520376(-)$1	229	71	107	14.6116
$$$ccc!!ccc"""cccooooooccc]ccc22ccc4	chr17:88390526-88390753(-)$1	227	26	62	13.7081
####ggggggg####cccmmmmccc333ggggggg4	chr3:36467485-36467707(-)$1	222	123	159	16.8848
bb[iiiiiiiii"""cccmmmmccc333iiiiiiii	chr10:79843138-79843367(-)$1	229	43	79	18.2755
!ffffff!!dddd[cccooooooccc333dddd444	chr18:36449263-36449490(+)$1	227	152	188	12.5680
eeeee!!===========mmmm===========22e	chr11:77523192-77523458(+)$1	266	177	213	16.8160
[iiiiiiiii[bb!!cccmmmmcccbb]iiiiiiii	chrX:138753901-138754136(-)$1	235	124	160	16.1044
ffff!!ggggggg!!cccmmmmccc22gggggggff	chrX:149935269-149935500(+)$1	231	77	113	14.5275
!============[ddddmmmmdddd]=========	chr3:95434063-95434298(+)$1	235	12	48	17.7086
f"""ccc"""ccc!!cccmmmmccc22cccccc333	chr11:80205264-80205499(+)$1	235	130	166	14.9160
=========="""cccooooooccc333========	chr3:103543993-103544224(-)$1	231	69	105	19.0977
gggggg[bb[ccc[aooooooa]ccc]bbggggggg	chr18:35063706-35063936(-)$1	230	10	46	12.8531
iiiiiiiiiiiiiiiiiimmmmiiiiiiiii>>>>>	chr3:9281003-9281227(+)$1	224	150	186	15.2361
ggggg####iiiiiiiiiooooooiiiiiiiii>>>	chr10:117252138-117252363(-)$1	225	93	129	15.1434
""=========="""iiiiiiiiillliiiiiiiii	chrX:109747924-109748169(+)$1	245	16	52	14.4364
[iiiiiiiii[bb[bbcccmmmmccc]bbbbiiiii	chr3:119422240-119422470(-)$1	230	68	104	13.3590
f$$$$$iiiiiiiii[bbmmmmbb]iiiiiiiiiff	chr12:32170265-32170491(-)$1	226	16	52	14.1465
ggggggg####eeeeeooooooeeeee4444ggggg	chr18:35776627-35776853(+)$1	226	147	183	12.7703
[bbbb[eeeee"""ddddmmmmdddd333eeeee33	chr11:87864370-87864712(+)$1	342	117	153	12.4140
eeeee[===========qqqqqqqq===========	chr18:70728130-70728362(+)$1	232	167	203	12.7382
ggg"""ccc[bb"""cccmmmmccc333bb]ccc33	chr11:88154252-88154477(-)$1	225	45	81	15.6955
=========####cccooooooccc55555======	chr14:119380784-119381013(+)$1	229	84	120	13.9151
+dddd[ccc[bb!!cccooooooccc22bb]ccc]d	chr11:118941371-118941599(-)$1	228	76	112	12.0406
==="""============mmmm============]=	chr18:35062509-35062737(-)$1	228	110	146	19.0644
eeeeiiiiiiiii"""bbmmmmbb]iiiiiiiii:E	chr11:115883931-115884163(-)$1	232	174	210	13.2688
==========="""ddddllldddd4444=======	chr14:79982095-79982320(+)$1	225	2	38	17.2713
iiiiiiii!!bb!!bboooooobb333bb22iiiii	chr7:97594529-97594750(+)$1	221	103	139	14.9227
dd!!==============mmmm==============	chr5:108536521-108536750(+)$1	229	44	80	18.6176
gggg[eeeee####ddddooooooddddeeeeeggg	chr8:129114707-129114938(-)$1	231	61	97	11.2704
$$$bb[a[ccc"""ddddllldddd333ccc22a]b	chr15:73035491-73035717(-)$1	226	36	72	12.2996
ggggggg[ffffff"""ammmma333ffffff]ggg	chr11:52055988-52056214(+)$1	226	24	60	12.3928
]ccc============bbmmmmbb22==========	chr15:103029109-103029340(-)$1	231	110	146	16.7284
4444eeeeeiiiiiiiiimmmmiiiiiiiii=====	chr5:52541438-52541666(-)$1	228	113	149	14.7704
iiiiii$$$$$eeeeeooooooeeeee333iiiiii	chrX:48357704-48357939(-)$1	235	167	203	13.1750
bb!!a[ggggggg[dddd####bb[===========	chr11:106643944-106644171(-)$1	227	81	117	12.1506
bddddddddccc"""cccmmmmccc333ccc]dddd	chr12:3648271-3648492(+)$1	221	94	130	12.6143
==================mmmm==============	chr4:53578357-53578583(+)$1	226	19	55	19.4171
""eeeee!!iiiiiiiiillliiiiiiiii22eeee	chr11:98667890-98668121(+)$1	231	43	79	13.3724
=================nnnnn==============	chr1:179378778-179379006(+)$1	228	28	64	17.7193
gg"""=============mmmm=============3	chr11:60012392-60012634(+)$1	242	85	121	18.8742
((ggggggg$$$$$ddddmmmmdddd333ggggggg	chr2:33262353-33262587(-)$1	234	56	92	12.7537
iiiiiiiii::gggggggmmmmggggggg=======	chr2:132361031-132361261(-)$1	230	89	125	13.7699
ddddiiiiiiiiicccnnnnnccc4444iiiiiiii	chrX:91519127-91519351(+)$1	224	99	135	13.6072
cc]ccc:==========ccclllccc]=========	chr11:87895754-87896007(+)$1	253	49	85	14.1625

#otherMatches

#Seq PSSM
UAAGUUUUAUACUAAAGCUGUAUUGAGUGUAAUGAA	chr1:63098929-63099187(-)$1	258	154	190	13.5771
auagauauauauauauauauauacauaAGGAGGGGG	chr2:84528897-84529127(-)$1	230	144	180	14.9451
UCUCUGUGUUCUUUCCAUGAGAAGUGGGGAAUGGGG	chr13:54780684-54780915(-)$1	231	171	207	13.4295
uuucuuuuuuuGUACGGAAUAGAUAAUUAAGAGUGA	chr8:4289417-4289647(-)$1	230	97	133	10.8891
GUACAGAUUUAAAAACAAAUCUUGUUGCUGAUUUGU	chr3:57645834-57646062(-)$1	228	70	106	13.2602
UGGGCUAACUAUGGAUACUGUGCUGUAUCUGUGUCU	chrX:35966352-35966580(+)$1	228	146	182	12.5348
AUAGGUAUUUAGAACCUGAUAAUAGUCUUUAAACAA	chrX:12869129-12869357(+)$1	228	125	161	12.9995
GUGAUCUUUGAUAUUCCUCUUUGGUGCAUCAGGGGU	chr9:51923067-51923302(-)$1	235	74	110	17.3340
GAAAGUGAAUGUGUAUAGUUUUCuauacacauacau	chr13:75908606-75908839(+)$1	233	188	224	13.1854
CAAUGAGCCUGCUGUUUGGAGUCAACUUGCAAAAGC	chr11:86520147-86520376(-)$1	229	71	107	14.6116
UUUAAGAAAAGUUAAGACUAUUAUCUCCUUCCCUUU	chr17:88390526-88390753(-)$1	227	26	62	13.7081
UAGAUUCCUCUCCUCCAUGUCUGUGUUAAGAGGGAA	chr3:36467485-36467707(-)$1	222	123	159	16.8848
UGUGUAUAUGUAGGGAAUUUAUAUUAGAUAUAUGUA	chr10:79843138-79843367(-)$1	229	43	79	18.2755
UAAAUACAGUACAUUUUGGUUUGGAAUUCUGUAGAA	chr18:36449263-36449490(+)$1	227	152	188	12.5680
aaauauauauauauauauacauauauauauauaGUU	chr11:77523192-77523458(+)$1	266	177	213	16.8160
AGAGUUACUUGAUUAAGGACUGUCUGUGAAGUAACU	chrX:138753901-138754136(-)$1	235	124	160	16.1044
UUUUAAACAUUAGCCUAUGAUAGUAAUUUAAUGUAG	chrX:149935269-149935500(+)$1	231	77	113	14.5275
UGUUAGGGGAAGGACAUGUAAAUAUGCCCUUCUCCU	chr3:95434063-95434298(+)$1	235	12	48	17.7086
UUCAGCACCAGGUAUUCUUAAUAGACCACCUGCACC	chr11:80205264-80205499(+)$1	235	130	166	14.9160
guaAUGUUAGUAUUUCUGCUUUGAAUCCUUGAUAUU	chr3:103543993-103544224(-)$1	231	69	105	19.0977
GGAGCCCUCUGUGCCAUUAGCGUUACUGAGGCUCCC	chr18:35063706-35063936(-)$1	230	10	46	12.8531
UGUGAAAAACUGUAGGGUUAAAGCCUUAUAGCAAAA	chr3:9281003-9281227(+)$1	224	150	186	15.2361
CUUUCAGUAUAAUGUCUUAGAUUAAAGACGUUGCCU	chr10:117252138-117252363(-)$1	225	93	129	15.1434
AAUCUGAAUGUUAAAUUGAGAGAACAGUUUUCUUAA	chrX:109747924-109748169(+)$1	245	16	52	14.4364
AUUUCUGAGCAUGUGCAGACUGGUCUAGCUAGUUCA	chr3:119422240-119422470(-)$1	230	68	104	13.3590
CACUAUUUCUAGUGAGAAAUUCUUGUUAUUAGAAGC	chr12:32170265-32170491(-)$1	226	16	52	14.1465
aaauauuguaaaaaaauuauauuuuuucaaaaauau	chr18:35776627-35776853(+)$1	226	147	183	12.7703
GGAGAGGGCUCACUGGAUCCCAAUCCUUGGAGCUGG	chr11:87864370-87864712(+)$1	342	117	153	12.4140
uggccguggccguggccggggucggggccguggccg	chr18:70728130-70728362(+)$1	232	167	203	12.7382
UGAAUGUUACACACAUCUUGCUAGACUAGUAUAAAA	chr11:88154252-88154477(-)$1	225	45	81	15.6955
UAUUUUUAUGCCCGUGUAUUUUCACAUUUAAUAAAA	chr14:119380784-119381013(+)$1	229	84	120	13.9151
UUCCAAUUAUUACCUGCUUGAAUGUAAAUAUUAAAU	chr11:118941371-118941599(-)$1	228	76	112	12.0406
UUGCAUUAUAUAUUGAUGUGUGUAUCAAUAUAUACC	chr18:35062509-35062737(-)$1	228	110	146	19.0644
GGGGAUUUUAUUUAUAAGGGCUCUAGAGUAAAAUAA	chr11:115883931-115884163(-)$1	232	174	210	13.2688
UUUUCUGCAAAUUCUCUAGUAUAGAAAGUUUUGUAG	chr14:79982095-79982320(+)$1	225	2	38	17.2713
UUAUUCAUCUCUAACAUGAUAUUGGAAAGUAAUGGA	chr7:97594529-97594750(+)$1	221	103	139	14.9227
AUGUACAUGUAUAUACACACAUGUGUAUAUAUAUGU	chr5:108536521-108536750(+)$1	229	44	80	18.6176
AUGGCUGUAUAAUUUUGAUUUUUUUUGAAUACAUUG	chr8:129114707-129114938(-)$1	231	61	97	11.2704
UAGAUGUCCAGUUGGUAUACCAUGCAUUCUGUUAGG	chr15:73035491-73035717(-)$1	226	36	72	12.2996
auuuuaucacagcaauagaagucguaUGUUGUUAUG	chr11:52055988-52056214(+)$1	226	24	60	12.3928
UGAUUGCCUGGUGCUUGCUUGUGCCAAGGUGCUGGG	chr15:103029109-103029340(-)$1	231	110	146	16.7284
UCCUUUUAGAAGUUGUGAAAUGUUACAACUUGUGCU	chr5:52541438-52541666(-)$1	228	113	149	14.7704
AUAAGAAAUGAAUAUUAAAUGCAAUAUAUGUCUUGU	chrX:48357704-48357939(-)$1	235	167	203	13.1750
UCUAACUUUUUAUUUUUGGUCUGGCUGUUGUGGUGU	chr11:106643944-106644171(-)$1	227	81	117	12.1506
CAGAUGAAGGAGCAUUCCUCUUGGGUAACUCACUUC	chr12:3648271-3648492(+)$1	221	94	130	12.6143
auauauguauauguauguguguauauauauguauau	chr4:53578357-53578583(+)$1	226	19	55	19.4171
AAUCUCUAGAAGGGUAGGGCUCUUAUCCUUGAAGAG	chr11:98667890-98668121(+)$1	231	43	79	13.3724
auauauauauauauauaaauaauauauauauauaua	chr1:179378778-179379006(+)$1	228	28	64	17.7193
uaguguauauauauguauacauauacauauauauaa	chr11:60012392-60012634(+)$1	242	85	121	18.8742
AAACUAUUUUCCAAGGGCUCAUGCCCCUUGAAUGGU	chr2:33262353-33262587(-)$1	234	56	92	12.7537
UUUAAAAACUGUUUUAGAAAAUUCUGGGAAGAGGAG	chr2:132361031-132361261(-)$1	230	89	125	13.7699
GACCUUUUUGCAUGGCUUUUUGCUGAAAAUGCAAAA	chrX:91519127-91519351(+)$1	224	99	135	13.6072
GUCAUAAUAAAAUGCAUUUCAGAGAAUAUGCAUUUU	chr11:87895754-87896007(+)$1	253	49	85	14.1625

#DB
(((...(((((((.((......)).)))))))....	chr1:63098929-63099187(-)$1	1	154	190	13.5771
)))))))))))))))))))))))..(((((((((((	chr2:84528897-84529127(-)$1	1	144	180	14.9451
((((((((((((((((((.....)))))....))))	chr13:54780684-54780915(-)$1	1	171	207	13.4295
.(((((...((((.(......)))))..))))).))	chr8:4289417-4289647(-)$1	1	97	133	10.8891
(.(((((((....(((((...)))))...)))))))	chr3:57645834-57646062(-)$1	1	70	106	13.2602
(((((....(((((((((......)))))))))...	chrX:35966352-35966580(+)$1	1	146	182	12.5348
(..(((.((((((..(((....)))..))))))...	chrX:12869129-12869357(+)$1	1	125	161	12.9995
..((((((((((...((.....))...)))))))))	chr9:51923067-51923302(-)$1	1	74	110	17.3340
)...(((.((((((((((....)))))))))).)))	chr13:75908606-75908839(+)$1	1	188	224	13.1854
((((((((.(((...(((....)))...)))...))	chr11:86520147-86520376(-)$1	1	71	107	14.6116
...(((..(((...(((......))).)))..))).	chr17:88390526-88390753(-)$1	1	26	62	13.7081
....(((((((....(((....)))...))))))).	chr3:36467485-36467707(-)$1	1	123	159	16.8848
((.(((((((((...(((....)))...))))))))	chr10:79843138-79843367(-)$1	1	43	79	18.2755
.((((((..((((.(((......)))...))))...	chr18:36449263-36449490(+)$1	1	152	188	12.5680
(((((..(((((((((((....)))))))))))..)	chr11:77523192-77523458(+)$1	1	177	213	16.8160
.(((((((((.((..(((....))))).))))))))	chrX:138753901-138754136(-)$1	1	124	160	16.1044
((((..(((((((..(((....)))..)))))))))	chrX:149935269-149935500(+)$1	1	77	113	14.5275
.((((((((((((.((((....)))).)))))))))	chr3:95434063-95434298(+)$1	1	12	48	17.7086
(...(((...(((..(((....)))..))))))...	chr11:80205264-80205499(+)$1	1	130	166	14.9160
((((((((((...(((......)))...))))))))	chr3:103543993-103544224(-)$1	1	69	105	19.0977
((((((.((.(((.(......).))).)))))))))	chr18:35063706-35063936(-)$1	1	10	46	12.8531
((((((((((((((((((....))))))))).....	chr3:9281003-9281227(+)$1	1	150	186	15.2361
(((((....(((((((((......)))))))))...	chr10:117252138-117252363(-)$1	1	93	129	15.1434
..((((((((((...(((((((((...)))))))))	chrX:109747924-109748169(+)$1	1	16	52	14.4364
.(((((((((.((.(((((....))).)))))))))	chr3:119422240-119422470(-)$1	1	68	104	13.3590
(.....(((((((((.((....)).)))))))))))	chr12:32170265-32170491(-)$1	1	16	52	14.1465
(((((((....(((((......)))))....)))))	chr18:35776627-35776853(+)$1	1	147	183	12.7703
.((((.(((((...((((....))))...)))))..	chr11:87864370-87864712(+)$1	1	117	153	12.4140
(((((.(((((((((((........)))))))))))	chr18:70728130-70728362(+)$1	1	167	203	12.7382
(((...(((.((...(((....)))...)).)))..	chr11:88154252-88154477(-)$1	1	45	81	15.6955
(((((((((....(((......))).....))))))	chr14:119380784-119381013(+)$1	1	84	120	13.9151
.((((.(((.((..(((......)))..)).))).)	chr11:118941371-118941599(-)$1	1	76	112	12.0406
(((...((((((((((((....)))))))))))).)	chr18:35062509-35062737(-)$1	1	110	146	19.0644
))))(((((((((...((....)).))))))))).)	chr11:115883931-115884163(-)$1	1	174	210	13.2688
(((((((((((...((((...))))....)))))))	chr14:79982095-79982320(+)$1	1	2	38	17.2713
((((((((..((..((......))...))..)))))	chr7:97594529-97594750(+)$1	1	103	139	14.9227
((..((((((((((((((....))))))))))))))	chr5:108536521-108536750(+)$1	1	44	80	18.6176
((((.(((((....((((......))))))))))))	chr8:129114707-129114938(-)$1	1	61	97	11.2704
...((.(.(((...((((...))))...)))..).)	chr15:73035491-73035717(-)$1	1	36	72	12.2996
(((((((.((((((...(....)...)))))).)))	chr11:52055988-52056214(+)$1	1	24	60	12.3928
.)))((((((((((((((....))..))))))))))	chr15:103029109-103029340(-)$1	1	110	146	16.7284
....)))))(((((((((....)))))))))(((((	chr5:52541438-52541666(-)$1	1	113	149	14.7704
((((((.....(((((......)))))...))))))	chrX:48357704-48357939(-)$1	1	167	203	13.1750
((..(.(((((((.((((....((.(((((((((((	chr11:106643944-106644171(-)$1	1	81	117	12.1506
)(((((((((((...(((....)))...))).))))	chr12:3648271-3648492(+)$1	1	94	130	12.6143
((((((((((((((((((....))))))))))))))	chr4:53578357-53578583(+)$1	1	19	55	19.4171
..(((((..(((((((((...)))))))))..))))	chr11:98667890-98668121(+)$1	1	43	79	13.3724
(((((((((((((((((.....))))))))))))))	chr1:179378778-179379006(+)$1	1	28	64	17.7193
((...(((((((((((((....))))))))))))).	chr11:60012392-60012634(+)$1	1	85	121	18.8742
..(((((((.....((((....))))...)))))))	chr2:33262353-33262587(-)$1	1	56	92	12.7537
)))))))))..(((((((....)))))))(((((((	chr2:132361031-132361261(-)$1	1	89	125	13.7699
))))((((((((((((.....)))....))))))))	chrX:91519127-91519351(+)$1	1	99	135	13.6072
)).))).(((((((((((((...))).)))))))))	chr11:87895754-87896007(+)$1	1	49	85	14.1625

#PSSM
= : 0.13	g : 0.13	e : 0.09	i : 0.09	[ : 0.07	f : 0.07	d : 0.05	b : 0.05	# : 0.03	$ : 0.03	! : 0.03	" : 0.03	h : 0.01	G : 0.01	+ : 0.01	] : 0.01	4 : 0.01	( : 0.01	c : 0.01	
= : 0.15	i : 0.13	g : 0.13	e : 0.09	d : 0.07	f : 0.05	$ : 0.05	b : 0.05	" : 0.05	# : 0.03	c : 0.03	[ : 0.01	h : 0.01	! : 0.01	: : 0.01	4 : 0.01	( : 0.01	
= : 0.18	g : 0.15	i : 0.13	e : 0.11	! : 0.05	f : 0.05	$ : 0.05	d : 0.05	" : 0.03	h : 0.01	: : 0.01	# : 0.01	[ : 0.01	b : 0.01	c : 0.01	4 : 0.01	] : 0.01	
= : 0.18	g : 0.13	i : 0.13	e : 0.11	" : 0.09	c : 0.07	d : 0.05	f : 0.03	b : 0.03	! : 0.03	h : 0.01	: : 0.01	# : 0.01	$ : 0.01	4 : 0.01	
= : 0.22	i : 0.16	g : 0.13	e : 0.11	c : 0.09	" : 0.07	b : 0.03	d : 0.03	h : 0.01	f : 0.01	! : 0.01	$ : 0.01	[ : 0.01	a : 0.01	
= : 0.24	i : 0.16	g : 0.11	e : 0.09	c : 0.09	[ : 0.09	" : 0.05	# : 0.03	! : 0.03	f : 0.01	$ : 0.01	d : 0.01	
= : 0.28	i : 0.16	g : 0.15	e : 0.09	c : 0.07	# : 0.03	[ : 0.03	! : 0.03	" : 0.01	f : 0.01	a : 0.01	$ : 0.01	d : 0.01	: : 0.01	
= : 0.32	i : 0.16	g : 0.11	e : 0.07	# : 0.05	[ : 0.05	! : 0.05	" : 0.03	c : 0.03	f : 0.01	b : 0.01	$ : 0.01	d : 0.01	
= : 0.33	i : 0.15	g : 0.11	c : 0.07	# : 0.05	! : 0.05	e : 0.05	" : 0.03	f : 0.03	[ : 0.01	b : 0.01	$ : 0.01	d : 0.01	
= : 0.32	i : 0.20	g : 0.07	c : 0.07	# : 0.05	[ : 0.05	d : 0.03	f : 0.03	e : 0.03	$ : 0.03	" : 0.01	! : 0.01	: : 0.01	
= : 0.30	i : 0.16	c : 0.11	g : 0.07	# : 0.07	b : 0.05	d : 0.03	f : 0.03	[ : 0.03	$ : 0.03	" : 0.01	e : 0.01	: : 0.01	
= : 0.28	i : 0.16	" : 0.09	b : 0.09	g : 0.07	# : 0.07	c : 0.07	d : 0.03	f : 0.03	e : 0.03	$ : 0.01	
= : 0.24	" : 0.20	i : 0.15	g : 0.07	# : 0.07	d : 0.03	f : 0.03	b : 0.03	c : 0.03	e : 0.03	! : 0.03	$ : 0.01	
= : 0.20	" : 0.20	[ : 0.13	i : 0.11	! : 0.11	e : 0.07	c : 0.05	# : 0.03	f : 0.01	$ : 0.01	g : 0.01	
= : 0.20	" : 0.15	d : 0.13	i : 0.11	c : 0.11	e : 0.07	! : 0.07	b : 0.05	a : 0.03	# : 0.01	g : 0.01	
c : 0.28	= : 0.20	d : 0.13	i : 0.11	b : 0.07	e : 0.07	o : 0.03	" : 0.03	[ : 0.01	g : 0.01	
c : 0.24	= : 0.18	o : 0.15	d : 0.13	i : 0.11	b : 0.07	e : 0.03	" : 0.01	g : 0.01	n : 0.01	
o : 0.20	c : 0.20	= : 0.13	d : 0.13	i : 0.11	n : 0.05	b : 0.05	e : 0.03	q : 0.01	a : 0.01	g : 0.01	
m : 0.47	o : 0.26	n : 0.07	l : 0.07	c : 0.03	= : 0.01	i : 0.01	q : 0.01	# : 0.01	
m : 0.49	o : 0.26	n : 0.07	l : 0.07	= : 0.01	i : 0.01	q : 0.01	# : 0.01	c : 0.01	
m : 0.49	o : 0.26	l : 0.09	n : 0.07	= : 0.01	i : 0.01	q : 0.01	# : 0.01	
m : 0.49	o : 0.22	n : 0.05	a : 0.03	i : 0.03	d : 0.03	= : 0.01	e : 0.01	q : 0.01	# : 0.01	c : 0.01	l : 0.01	
c : 0.22	= : 0.15	b : 0.13	d : 0.11	o : 0.11	i : 0.07	e : 0.05	n : 0.01	] : 0.01	m : 0.01	q : 0.01	a : 0.01	g : 0.01	l : 0.01	
c : 0.33	b : 0.13	= : 0.13	d : 0.11	e : 0.07	i : 0.07	o : 0.05	: : 0.01	q : 0.01	3 : 0.01	g : 0.01	
c : 0.32	d : 0.13	= : 0.13	i : 0.09	e : 0.07	] : 0.05	3 : 0.05	: : 0.01	l : 0.01	q : 0.01	2 : 0.01	[ : 0.01	g : 0.01	4 : 0.01	
= : 0.18	3 : 0.18	i : 0.13	c : 0.11	d : 0.09	e : 0.07	2 : 0.07	g : 0.03	4 : 0.03	b : 0.01	l : 0.01	5 : 0.01	
3 : 0.24	= : 0.20	i : 0.13	2 : 0.09	] : 0.09	e : 0.05	g : 0.03	4 : 0.03	b : 0.01	l : 0.01	5 : 0.01	d : 0.01	f : 0.01	
= : 0.26	3 : 0.22	i : 0.15	g : 0.05	b : 0.05	4 : 0.05	2 : 0.03	f : 0.03	c : 0.03	e : 0.01	] : 0.01	5 : 0.01	d : 0.01	
= : 0.28	i : 0.20	3 : 0.09	c : 0.09	b : 0.09	g : 0.07	4 : 0.05	e : 0.03	f : 0.03	5 : 0.01	
= : 0.32	i : 0.20	g : 0.11	c : 0.09	e : 0.05	b : 0.05	4 : 0.03	f : 0.03	d : 0.01	5 : 0.01	2 : 0.01	3 : 0.01	
= : 0.33	i : 0.20	g : 0.11	c : 0.07	e : 0.05	2 : 0.05	4 : 0.03	f : 0.03	] : 0.03	d : 0.01	b : 0.01	
= : 0.35	i : 0.20	g : 0.13	e : 0.05	2 : 0.05	c : 0.05	f : 0.03	4 : 0.01	3 : 0.01	d : 0.01	> : 0.01	] : 0.01	
= : 0.35	i : 0.20	g : 0.11	e : 0.07	c : 0.07	] : 0.03	d : 0.03	4 : 0.01	f : 0.01	3 : 0.01	> : 0.01	2 : 0.01	
= : 0.33	i : 0.16	g : 0.15	c : 0.07	3 : 0.05	4 : 0.03	> : 0.03	e : 0.03	] : 0.01	5 : 0.01	2 : 0.01	a : 0.01	d : 0.01	
= : 0.32	g : 0.15	i : 0.13	3 : 0.07	] : 0.05	4 : 0.03	c : 0.03	e : 0.03	f : 0.03	> : 0.03	5 : 0.01	2 : 0.01	: : 0.01	d : 0.01	
= : 0.32	g : 0.13	i : 0.13	3 : 0.09	4 : 0.07	e : 0.05	f : 0.03	> : 0.03	d : 0.03	5 : 0.01	c : 0.01	E : 0.01	b : 0.01	

#score	774.3465499842829
#seq	53
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_CDS_m3_run2.txt

#BEAR
fffff[ccc!!ddddnnnnndddd22cccffffff	chr2:163279368-163279594(+)$1	226	104	139	12.6635
CCbb!!cccccc[bbnnnnnbb]ccc333ccc22b	chr19:12844884-12845104(-)$1	220	18	53	10.8119
'ffffff[ddddcccnnnnnccc]dddd]ffffff	chr2:152239638-152239866(-)$1	228	71	106	13.6692
b[ffffff[bbcccooooooccc333bb]ffffff	chr6:128315649-128315880(+)$1	231	72	107	10.1142
cdddd[eeeeeddddnnnnndddd]eeeee]dddd	chr14:120877938-120878174(+)$1	236	155	190	12.8165
ffeeeee]cccddddnnnnndddd::ccc[ccccc	chr2:104629210-104629432(-)$1	222	131	166	10.7864
===========[cccnnnnnccc]===========	chr19:46107643-46107901(-)$1	258	54	89	15.4654
geeeee!!gggggggxxxxxxxxxxxxxxxggggg	chr13:56824902-56825132(+)$1	230	79	114	9.8683
[dddd[a!!eeeeeccclllccc]eeeee22a]dd	chr4:131760378-131760689(-)$1	311	251	286	10.1431
fff"""bb"""ddddnnnnndddd4444bb333ff	chr17:4995586-4995813(+)$1	227	111	146	12.6365
[cccdddd[ddddoooooodddd]dddd]ccc]dd	chr10:80607633-80607862(+)$1	229	108	143	10.1069
ggggggeeeeecccooooooccc]eeeee>>>>>>	chr8:129115145-129115393(-)$1	248	131	166	11.4936
c"""a[ccc[ccc[annnnna]cccccca]ccc]b	chr1:75312103-75312325(-)$1	222	23	58	14.1367
c"""eeeee[bb[bboooooobb]bbeeeee333c	chr2:23052389-23052619(+)$1	230	169	204	10.6048
eeeeeee[ddddcccnnnnnccc]dddd]eeeeeh	chr11:6375064-6375301(-)$1	237	45	80	14.9108
[ffffff[gggggggnnnnnggggggg]ffffffc	chr11:69803430-69803660(+)$1	230	46	81	12.1694
[a[accc"""eeeeennnnneeeee333ccc]a]a	chr7:30919326-30919556(+)$1	230	109	144	12.9590
ea!!ccc"""eeeeennnnneeeee22ccc22a]e	chr18:15221367-15221621(-)$1	254	175	210	12.2512
cceeeee[cccddddnnnnndddd]ccceeeee]c	chr6:71389982-71390222(-)$1	240	131	166	13.7941
cc!!ccc[eeeee[bbnnnnnbb]eeeeecccccc	chr14:22805432-22805657(-)$1	225	95	130	11.7846
ffffffdddd!!cccnnnnnccc22dddd777777	chr3:61169139-61169368(+)$1	229	39	74	11.3744
gggg[a!!dddd!!annnnna22dddd22aggggg	chr16:64855476-64855733(+)$1	257	204	239	13.6214
gggg[eeeee[a[bbnnnnnbb]a]eeeee]gggg	chr11:98657320-98657544(+)$1	224	162	197	13.4065
====ccc!!ccc!!aooooooa22ccc333ccc]=	chr4:48481458-48481681(-)$1	223	56	91	12.4465
eeeee!!dddd[cccnnnnnccc]dddd22eeeee	chr12:110032131-110032381(+)$1	250	51	86	15.0263
e[ccc[bb[bb[cccnnnnncccbb]bb]ccceee	chr4:11453992-11454216(+)$1	224	40	75	12.1063
e"""ffffff[cccoooooocccffffff]eeeee	chr4:141025242-141025464(-)$1	222	143	178	10.3024
eeeee"""ccc[cccnnnnnccc]ccc22eeeee]	chr18:31993245-31993488(+)$1	243	134	169	14.8215
bb[dddd[dddd[bboooooobb]ddddddddbbf	chr1:36125396-36125650(+)$1	254	27	62	9.8628
dd!!ccc[cccddddnnnnndddd]ccc333cccd	chrX:91518476-91518724(+)$1	248	29	64	14.2255
dddd[eeeee"""bbnnnnnbb333eeeee333dd	chr19:10274561-10274792(-)$1	231	123	158	13.7981
ffffff[dddd[cccnnnnnccc]dddd]ffffff	chr11:97989541-97989768(-)$1	227	32	67	14.2382
%%ccc[eeeee!!bbnnnnnbb22eeeee]ccc66	chr1:173268537-173268768(+)$1	231	54	89	11.4987
rrdddddddd!!cccnnnnnccc22dddd::cccm	chr11:109257430-109257660(+)$1	230	144	179	11.1356
eeaiiiiiiiiia[bbnnnnnbb]a]iiiiiiiii	chr10:31328869-31329106(-)$1	237	46	81	11.3336
gg%%%%%%ddddcccnnnnnccc]ddddggggggg	chr11:74979414-74979639(-)$1	225	165	200	11.1516
[dddd!!ccc!!cccnnnnnccc]ccc22dddd]b	chr9:75245704-75245925(-)$1	221	88	123	14.6108
:eeeee[dddd!!ccclllccc22dddd]eeeeec	chr9:108436364-108436593(+)$1	229	159	194	9.9327
dddd!!ccc"""ccclllccc4444ccc22dddd:	chr19:29885534-29885758(-)$1	224	120	155	9.3919
""eeeee[gggggggnnnnnggggggg]eeeee33	chr15:80086703-80086934(+)$1	231	55	90	13.2665
eeeeee[cccccccccmmmmccc]ccc]ccc333e	chr4:135885235-135885456(+)$1	221	56	91	10.6110
dddd[ccc[ddddbboooooobb]ddddcccdddd	chr5:36957096-36957337(-)$1	241	0	35	10.8025
eeeee!!ddddddddoooooodddd22dddd>>>>	chr3:107135243-107135475(-)$1	232	39	74	10.2308
eee!!bb[ccccccooooooccc333cccbb22ee	chr3:100276993-100277226(-)$1	233	180	215	11.3937
ccc!!ddddffffffnnnnnffffff]ddddcccg	chr11:96688674-96688909(-)$1	235	145	180	11.4558
c####eeeee[a[bbnnnnnbb]a]eeeee4444c	chr11:97524788-97525040(+)$1	252	124	159	13.7397
[iiiiiiiii!!cccnnnnnccc]iiiiiiiii]f	chr16:98172494-98172729(-)$1	235	63	98	15.0205
$$$ccc[ccc[ddddnnnnnddddcccccc4444c	chr15:88693212-88693452(+)$1	240	147	182	13.4384
dd!!bb"""ffffffnnnnnffffff333bb22dd	chr13:104977471-104977695(+)$1	224	47	82	10.9827
Edddd[dddd[bb[annnnna]bbdddd22ddddc	chr7:97592276-97592506(+)$1	230	61	96	11.2438
b!!ggggggg!!bboooooobb4444ggggggg22	chr6:71379018-71379245(-)$1	227	121	156	10.8427
eeeeeeeeeeddddnnnnndddd]eeeee]eeeee	chr4:120819296-120819521(-)$1	225	127	162	11.6835
hhhhhhh"""ddddannnnna]dddd4444hhhhh	chr11:75492992-75493228(+)$1	236	154	189	11.6517
b[bb!!dddd[ddddnnnnndddd]dddd22bbbb	chr1:192995259-192995487(-)$1	228	144	179	11.9322
ee[eeeee####cccnnnnnccceeeeeeeeee33	chr3:152091582-152091810(+)$1	228	98	133	14.3397
iiiiiiiddddcccooooooccc]dddd>>>>>>>	chr1:138523838-138524065(+)$1	227	171	206	11.6577

#otherMatches

#Seq PSSM
UCCAGAGACGCUUUGCCUUCCGGAAAGUCCUGGGC	chr2:163279368-163279594(+)$1	226	104	139	12.6635
GCCCUUAAGAUCCUCUGAUUGAUGAUUUACUUUUG	chr19:12844884-12845104(-)$1	220	18	53	10.8119
UGGUUUUGGGGCGGAGCAGGUCCAGCCUGAAGACC	chr2:152239638-152239866(-)$1	228	71	106	13.6692
GAUGAGAACCAGCCCCCGCCGGCCACUGAUUCUCA	chr6:128315649-128315880(+)$1	231	72	107	10.1142
CGCCUUCGGUGCUGGAGAUCCUGGACACCGCGGGC	chr14:120877938-120878174(+)$1	236	155	190	12.8165
AGCCUGUAACCUCUGAAAACCAGACACUUAGUUAU	chr2:104629210-104629432(-)$1	222	131	166	10.7864
CCUCCGCCACUCUCAGGAUGUGAUGGUGGUGGGGG	chr19:46107643-46107901(-)$1	258	54	89	15.4654
UUCACUAGUCCAGCCGUGAAGCGAUUGUUGGGCUG	chr13:56824902-56825132(+)$1	230	79	114	9.8683
UGGAUGCCGCCUAUCGUUCCAUGAAUGGGAAGGGU	chr4:131760378-131760689(-)$1	311	251	286	10.1431
GGACAACAAAGCCCCGGGAUGGGGAUGAUGCACUC	chr17:4995586-4995813(+)$1	227	111	146	12.6365
GUCAUGGACUACUACCUGAAGUACUUCAGUGGAGC	chr10:80607633-80607862(+)$1	229	108	143	10.1069
CUGCACCCUCUGCCACGAGCGGCUGGAGGAUACUC	chr8:129115145-129115393(-)$1	248	131	166	11.4936
AGCAGAGGCUCGUCCAUAUAGAACGGCCCAUCCUG	chr1:75312103-75312325(-)$1	222	23	58	14.1367
GUUGAUAUUGCUGGUUUUAUUACAAGAAUAUACUU	chr2:23052389-23052619(+)$1	230	169	204	10.6048
CUggccggcggcccgggaggcggcgccggcggccc	chr11:6375064-6375301(-)$1	237	45	80	14.9108
AGGUUCACUGCUGAUGUCCGAUCGGUGCUGAGCCG	chr11:69803430-69803660(+)$1	230	46	81	12.1694
ugcgggaaguccuuccgccagaaggcaauccucac	chr7:30919326-30919556(+)$1	230	109	144	12.9590
GCCCGUUCUAAGAGCGGCCAGCUCUACAGCAAGUC	chr18:15221367-15221621(-)$1	254	175	210	12.2512
CUGCACAAGUUCUCGGGCUACGGGCAGCUGUGCGA	chr6:71389982-71390222(-)$1	240	131	166	13.7941
GAGCGACAUCGGCGUGGAGGACAAGUCGAGUUUCA	chr14:22805432-22805657(-)$1	225	95	130	11.7846
GCGGGACCUGUACAUCAAGAAUGGCCAGGGCUUCA	chr3:61169139-61169368(+)$1	229	39	74	11.3744
CCUGCGCAAACAGAGAAAGCCAGUGUUAUCCAGGA	chr16:64855476-64855733(+)$1	257	204	239	13.6214
CGGCAUCGGCGGGGAGCCAGUCGCAGCCGGCGCUG	chr11:98657320-98657544(+)$1	224	162	197	13.4065
GUAAGUGCCCAUCUCUCUAGUGCCAUGACUCACAU	chr4:48481458-48481681(-)$1	223	56	91	12.4465
cggcggggccggcgcggcgggcggcggcggcgccg	chr12:110032131-110032381(+)$1	250	51	86	15.0263
CUAUCCCUCUCUCAGGUCGUUUGGAUAGUGAUGAG	chr4:11453992-11454216(+)$1	224	40	75	12.1063
GUCCCCAACCCUGGCUCCAAUCAGGUUGGUCAUUG	chr4:141025242-141025464(-)$1	222	143	178	10.3024
AGAGGCCAGGUUUAUACACAAUAUACCAUUUUCUG	chr18:31993245-31993488(+)$1	243	134	169	14.8215
gguggcggcggcgguggcggAGCAGCUgcgccccc	chr1:36125396-36125650(+)$1	254	27	62	9.8628
CUCAGGGCUGCCCUUCCACAGAGGUGUACAACCCA	chrX:91518476-91518724(+)$1	248	29	64	14.2255
GCCAAAUGAAGAAGAGUUGGUCAAAUUUAUGUGUG	chr19:10274561-10274792(-)$1	231	123	158	13.7981
GAUGAAUGUUAAUGCCUGAUGCAGUGAUUUUUGUU	chr11:97989541-97989768(-)$1	227	32	67	14.2382
UUGUUGAUGUUAUUGAUGACCAUGAACGUGGACUC	chr1:173268537-173268768(+)$1	231	54	89	11.4987
UAGCAUCAAAGACUAUUUCCUAGAAUUUGAAGGGG	chr11:109257430-109257660(+)$1	230	144	179	11.1356
cgcgcugcccggcgccggcuggggguccgggcggc	chr10:31328869-31329106(-)$1	237	46	81	11.3336
GUACCAUCUGCGGAAAGAAGUUCACGCAACGCGGA	chr11:74979414-74979639(-)$1	225	165	200	11.1516
UUUCUGCUGUAGACAAUGACUGUGACAAAAGAGUA	chr9:75245704-75245925(-)$1	221	88	123	14.6108
ACAGGAGAAACUUGGACCAUCCCUGUUUAUUCUGC	chr9:108436364-108436593(+)$1	229	159	194	9.9327
CAUGGAAGAUGAUGACCCUCAGACUUCUUACAUGG	chr19:29885534-29885758(-)$1	224	120	155	9.3919
GUGUUGGCGGGGGACUUGAUGUCCCCCUUCGACCA	chr15:80086703-80086934(+)$1	231	55	90	13.2665
UGAGAUUCGCCCUGGUAAACACCUGGGAGUGUGCA	chr4:135885235-135885456(+)$1	221	56	91	10.6110
UCUAAGCUAGAAUCUGUGUGUGGUAUUCAGCUAGA	chr5:36957096-36957337(-)$1	241	0	35	10.8025
GGCUGUUUCACGAGUUCAAACGCUUCGGUGAUGUA	chr3:107135243-107135475(-)$1	232	39	74	10.2308
CAGCUGGUGAGAGAUGUGGUUCUGUGCUCCCUUCU	chr3:100276993-100277226(-)$1	233	180	215	11.3937
GGUGAGGGCCCUGGAUAGGUUCCAGGUGCCUACCA	chr11:96688674-96688909(-)$1	235	145	180	11.4558
GUAUGUUCGGACGAGAGGGGCUGGGCCGAAAACCC	chr11:97524788-97525040(+)$1	252	124	159	13.7397
CCCAGAUUCUGACUUAAACAGAGAGGAGUUUGGUG	chr16:98172494-98172729(-)$1	235	63	98	15.0205
AUCGCCGACGGACUCCCGGUGAGUCGUGGCUCCGG	chr15:88693212-88693452(+)$1	240	147	182	13.4384
AUCUGUAUAUUGCACUGUGUGUGCAACUCACUUGU	chr13:104977471-104977695(+)$1	224	47	82	10.9827
CGGGCCGUCCUGGCCAACGAGACCGGACUAGCUCG	chr7:97592276-97592506(+)$1	230	61	96	11.2438
CACUUGUUCUGACACAGUGCUGCAAAAGAAUAAAG	chr6:71379018-71379245(-)$1	227	121	156	10.8427
UCUUCCUUUCUGAAAUUUAUUCAGGAAAGUGAAGA	chr4:120819296-120819521(-)$1	225	127	162	11.6835
GCCCGCUCAGCCUCCGCCGGGUGAGGGACAGGCGG	chr11:75492992-75493228(+)$1	236	154	189	11.6517
GCAAUUGGGGAGUUCUUACUGAAUCCUCCUUUUCC	chr1:192995259-192995487(-)$1	228	144	179	11.9322
GGACAUUUGCCAUCUGCCAAAGAGAGUGCCAGUCA	chr3:152091582-152091810(+)$1	228	98	133	14.3397
UUUUGGCCAGUCUGUUACCUCAGUGCUGCCAUCUU	chr1:138523838-138524065(+)$1	227	171	206	11.6577

#DB
(((((.(((..((((.....))))..)))))))))	chr2:163279368-163279594(+)$1	1	104	139	12.6635
((((..((((((.((.....)).)))...)))..)	chr19:12844884-12845104(-)$1	1	18	53	10.8119
.((((((.(((((((.....))).)))).))))))	chr2:152239638-152239866(-)$1	1	71	106	13.6692
(.((((((.(((((......)))...)).))))))	chr6:128315649-128315880(+)$1	1	72	107	10.1142
(((((.(((((((((.....)))).))))).))))	chr14:120877938-120878174(+)$1	1	155	190	12.8165
))))))).)))((((.....))))..(((.(((((	chr2:104629210-104629432(-)$1	1	131	166	10.7864
(((((((((((.(((.....))).)))))))))))	chr19:46107643-46107901(-)$1	1	54	89	15.4654
((((((..(((((((...............)))))	chr13:56824902-56825132(+)$1	1	79	114	9.8683
.((((.(..((((((((...))).)))))..).))	chr4:131760378-131760689(-)$1	1	251	286	10.1431
(((...((...((((.....))))....))...))	chr17:4995586-4995813(+)$1	1	111	146	12.6365
.(((((((.((((......)))).)))).))).))	chr10:80607633-80607862(+)$1	1	108	143	10.1069
((((((((((((((......))).)))))......	chr8:129115145-129115393(-)$1	1	131	166	11.4936
(...(.(((.(((.(.....).))))))).))).)	chr1:75312103-75312325(-)$1	1	23	58	14.1367
(...(((((.((.((......)).)))))))...)	chr2:23052389-23052619(+)$1	1	169	204	10.6048
))(((((.(((((((.....))).)))).)))))(	chr11:6375064-6375301(-)$1	1	45	80	14.9108
.((((((.(((((((.....))))))).)))))))	chr11:69803430-69803660(+)$1	1	46	81	12.1694
.(.((((...(((((.....)))))...))).).)	chr7:30919326-30919556(+)$1	1	109	144	12.9590
((..(((...(((((.....)))))..)))..).)	chr18:15221367-15221621(-)$1	1	175	210	12.2512
(((((((.(((((((.....)))).)))))))).)	chr6:71389982-71390222(-)$1	1	131	166	13.7941
((..(((.(((((.((.....)).)))))))))))	chr14:22805432-22805657(-)$1	1	95	130	11.7846
((((((((((..(((.....)))..))))......	chr3:61169139-61169368(+)$1	1	39	74	11.3744
((((.(..((((..(.....)..))))..))))))	chr16:64855476-64855733(+)$1	1	204	239	13.6214
((((.(((((.(.((.....)).).))))).))))	chr11:98657320-98657544(+)$1	1	162	197	13.4065
(((((((..(((..(......)..)))...))).)	chr4:48481458-48481681(-)$1	1	56	91	12.4465
(((((..((((.(((.....))).))))..)))))	chr12:110032131-110032381(+)$1	1	51	86	15.0263
(.(((.((.((.(((.....))))).)).))))))	chr4:11453992-11454216(+)$1	1	40	75	12.1063
(...((((((.(((......))))))))).)))))	chr4:141025242-141025464(-)$1	1	143	178	10.3024
(((((...(((.(((.....))).)))..))))).	chr18:31993245-31993488(+)$1	1	134	169	14.8215
((.((((.((((.((......)).)))))))))))	chr1:36125396-36125650(+)$1	1	27	62	9.8628
((..(((.(((((((.....)))).)))...))))	chrX:91518476-91518724(+)$1	1	29	64	14.2255
((((.(((((...((.....))...)))))...))	chr19:10274561-10274792(-)$1	1	123	158	13.7981
((((((.((((.(((.....))).)))).))))))	chr11:97989541-97989768(-)$1	1	32	67	14.2382
..(((.(((((..((.....))..))))).)))..	chr1:173268537-173268768(+)$1	1	54	89	11.4987
..))))((((..(((.....)))..))))..(((.	chr11:109257430-109257660(+)$1	1	144	179	11.1356
(((((((((((((.((.....)).).)))))))))	chr10:31328869-31329106(-)$1	1	46	81	11.3336
((......(((((((.....))).)))))))))))	chr11:74979414-74979639(-)$1	1	165	200	11.1516
.((((..(((..(((.....))).)))..)))).)	chr9:75245704-75245925(-)$1	1	88	123	14.6108
.(((((.((((..(((...)))..)))).)))))(	chr9:108436364-108436593(+)$1	1	159	194	9.9327
((((..(((...(((...)))....)))..)))).	chr19:29885534-29885758(-)$1	1	120	155	9.3919
..(((((.(((((((.....))))))).)))))..	chr15:80086703-80086934(+)$1	1	55	90	13.2665
((((((.(((((((((....))).))).)))...)	chr4:135885235-135885456(+)$1	1	56	91	10.6110
((((.(((.((((((......)).)))))))))))	chr5:36957096-36957337(-)$1	1	0	35	10.8025
(((((..((((((((......))))..))))....	chr3:107135243-107135475(-)$1	1	39	74	10.2308
(((..((.((((((......)))...)))))..))	chr3:100276993-100277226(-)$1	1	180	215	11.3937
(((..((((((((((.....)))))).))))))))	chr11:96688674-96688909(-)$1	1	145	180	11.4558
(....(((((.(.((.....)).).)))))....)	chr11:97524788-97525040(+)$1	1	124	159	13.7397
.(((((((((..(((.....))).))))))))).)	chr16:98172494-98172729(-)$1	1	63	98	15.0205
...(((.(((.((((.....))))))))))....)	chr15:88693212-88693452(+)$1	1	147	182	13.4384
((..((...((((((.....))))))...))..))	chr13:104977471-104977695(+)$1	1	47	82	10.9827
(((((.((((.((.(.....).))))))..))))(	chr7:97592276-97592506(+)$1	1	61	96	11.2438
(..(((((((..((......))....)))))))..	chr6:71379018-71379245(-)$1	1	121	156	10.8427
((((((((((((((.....)))).))))).)))))	chr4:120819296-120819521(-)$1	1	127	162	11.6835
(((((((...(((((.....).))))....)))))	chr11:75492992-75493228(+)$1	1	154	189	11.6517
(.((..((((.((((.....)))).))))..))))	chr1:192995259-192995487(-)$1	1	144	179	11.9322
((.(((((....(((.....)))))))))))))..	chr3:152091582-152091810(+)$1	1	98	133	14.3397
((((((((((((((......))).)))).......	chr1:138523838-138524065(+)$1	1	171	206	11.6577

#PSSM
e : 0.21	c : 0.12	[ : 0.10	f : 0.08	g : 0.08	d : 0.08	b : 0.07	= : 0.03	C : 0.01	' : 0.01	% : 0.01	r : 0.01	: : 0.01	" : 0.01	$ : 0.01	E : 0.01	h : 0.01	i : 0.01	
e : 0.19	d : 0.16	f : 0.12	c : 0.07	g : 0.07	" : 0.07	[ : 0.05	= : 0.03	a : 0.03	i : 0.03	C : 0.01	b : 0.01	% : 0.01	r : 0.01	# : 0.01	$ : 0.01	! : 0.01	h : 0.01	
e : 0.21	d : 0.14	f : 0.12	! : 0.08	c : 0.07	g : 0.05	" : 0.05	[ : 0.05	b : 0.03	= : 0.03	i : 0.03	a : 0.01	% : 0.01	# : 0.01	$ : 0.01	h : 0.01	
e : 0.21	d : 0.16	f : 0.10	! : 0.10	" : 0.07	c : 0.07	g : 0.07	i : 0.05	b : 0.03	= : 0.03	a : 0.01	% : 0.01	# : 0.01	h : 0.01	
e : 0.23	c : 0.14	f : 0.12	d : 0.12	! : 0.08	[ : 0.07	i : 0.05	g : 0.03	= : 0.01	" : 0.01	a : 0.01	% : 0.01	# : 0.01	b : 0.01	h : 0.01	
e : 0.23	[ : 0.12	c : 0.12	! : 0.10	f : 0.10	d : 0.07	i : 0.05	" : 0.03	g : 0.03	b : 0.03	= : 0.01	a : 0.01	% : 0.01	h : 0.01	
e : 0.23	c : 0.17	d : 0.12	! : 0.08	f : 0.07	[ : 0.07	b : 0.05	i : 0.05	" : 0.03	= : 0.01	a : 0.01	% : 0.01	g : 0.01	h : 0.01	
d : 0.19	[ : 0.16	e : 0.16	c : 0.14	" : 0.08	! : 0.07	f : 0.03	b : 0.03	i : 0.03	] : 0.01	= : 0.01	% : 0.01	g : 0.01	
d : 0.26	c : 0.21	e : 0.16	" : 0.08	[ : 0.07	g : 0.07	! : 0.03	i : 0.03	= : 0.01	f : 0.01	# : 0.01	
d : 0.28	c : 0.17	e : 0.16	" : 0.08	g : 0.07	f : 0.05	b : 0.03	[ : 0.03	i : 0.03	! : 0.01	= : 0.01	# : 0.01	
d : 0.24	c : 0.16	e : 0.12	! : 0.10	[ : 0.10	b : 0.05	g : 0.05	" : 0.05	f : 0.03	= : 0.01	i : 0.01	# : 0.01	
d : 0.32	c : 0.16	! : 0.12	[ : 0.08	e : 0.07	g : 0.05	b : 0.03	a : 0.03	" : 0.03	f : 0.03	i : 0.01	# : 0.01	
c : 0.37	d : 0.23	[ : 0.08	e : 0.07	! : 0.07	g : 0.05	f : 0.03	b : 0.03	" : 0.01	a : 0.01	
c : 0.37	d : 0.19	b : 0.16	[ : 0.07	g : 0.05	e : 0.05	! : 0.03	f : 0.03	o : 0.01	
c : 0.30	b : 0.17	d : 0.16	o : 0.12	a : 0.08	g : 0.05	e : 0.03	f : 0.03	n : 0.01	
n : 0.66	o : 0.21	c : 0.05	b : 0.03	x : 0.01	l : 0.01	
n : 0.69	o : 0.21	l : 0.03	x : 0.01	c : 0.01	m : 0.01	
n : 0.69	o : 0.21	l : 0.05	x : 0.01	m : 0.01	
n : 0.69	o : 0.21	l : 0.03	x : 0.01	c : 0.01	m : 0.01	
n : 0.67	o : 0.19	d : 0.03	c : 0.03	x : 0.01	l : 0.01	m : 0.01	
c : 0.39	d : 0.17	b : 0.10	o : 0.08	a : 0.07	g : 0.03	e : 0.03	n : 0.03	f : 0.03	x : 0.01	
c : 0.37	d : 0.19	b : 0.19	] : 0.05	g : 0.03	e : 0.03	f : 0.03	x : 0.01	2 : 0.01	a : 0.01	4 : 0.01	
c : 0.37	d : 0.21	b : 0.10	2 : 0.07	] : 0.05	g : 0.03	e : 0.03	4 : 0.03	f : 0.03	x : 0.01	3 : 0.01	
] : 0.35	d : 0.19	2 : 0.08	3 : 0.05	e : 0.05	f : 0.05	c : 0.03	g : 0.03	a : 0.03	b : 0.03	4 : 0.03	x : 0.01	
d : 0.24	e : 0.14	c : 0.12	] : 0.10	2 : 0.05	3 : 0.05	4 : 0.05	f : 0.05	b : 0.03	g : 0.03	: : 0.01	= : 0.01	x : 0.01	a : 0.01	i : 0.01	
d : 0.28	c : 0.17	e : 0.17	2 : 0.05	3 : 0.05	f : 0.05	4 : 0.03	g : 0.03	] : 0.03	: : 0.01	= : 0.01	x : 0.01	b : 0.01	i : 0.01	
d : 0.26	c : 0.21	e : 0.19	3 : 0.05	g : 0.05	b : 0.03	4 : 0.03	2 : 0.03	i : 0.03	= : 0.01	x : 0.01	f : 0.01	] : 0.01	
d : 0.28	e : 0.19	c : 0.16	3 : 0.07	] : 0.05	2 : 0.05	b : 0.03	4 : 0.03	i : 0.03	= : 0.01	x : 0.01	f : 0.01	g : 0.01	
e : 0.23	c : 0.14	] : 0.12	d : 0.10	2 : 0.10	3 : 0.07	f : 0.03	i : 0.03	g : 0.03	= : 0.01	x : 0.01	b : 0.01	a : 0.01	4 : 0.01	> : 0.01	
e : 0.19	c : 0.16	f : 0.08	2 : 0.08	] : 0.07	d : 0.07	b : 0.05	> : 0.03	3 : 0.03	i : 0.03	g : 0.03	[ : 0.01	= : 0.01	x : 0.01	7 : 0.01	a : 0.01	: : 0.01	4 : 0.01	
c : 0.19	e : 0.17	d : 0.10	f : 0.08	g : 0.07	2 : 0.05	3 : 0.05	] : 0.03	> : 0.03	i : 0.03	b : 0.03	4 : 0.03	= : 0.01	7 : 0.01	: : 0.01	h : 0.01	
c : 0.19	e : 0.16	d : 0.10	f : 0.08	g : 0.08	3 : 0.07	> : 0.05	2 : 0.05	i : 0.03	4 : 0.03	= : 0.01	a : 0.01	] : 0.01	7 : 0.01	h : 0.01	b : 0.01	
e : 0.17	c : 0.14	f : 0.08	d : 0.08	g : 0.08	3 : 0.07	2 : 0.05	> : 0.05	] : 0.03	a : 0.03	b : 0.03	i : 0.03	4 : 0.03	= : 0.01	7 : 0.01	h : 0.01	
d : 0.14	e : 0.14	] : 0.12	f : 0.10	c : 0.08	g : 0.07	3 : 0.07	> : 0.05	2 : 0.03	b : 0.03	4 : 0.03	= : 0.01	7 : 0.01	6 : 0.01	i : 0.01	h : 0.01	
c : 0.16	f : 0.12	d : 0.12	e : 0.12	g : 0.08	b : 0.07	> : 0.05	= : 0.03	h : 0.03	3 : 0.03	a : 0.01	7 : 0.01	] : 0.01	6 : 0.01	m : 0.01	i : 0.01	: : 0.01	2 : 0.01	

#score	681.7664678779782
#seq	56
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_CDS_m1_run1.txt

#BEAR
hhhhvvvvvvvvvvvvvhhhhh	chr2:34630984-34631236(+)$1	252	143	165	21.1394
hh[bbvvvvvvvvvvvvvbb]h	chr11:82578626-82578854(+)$1	228	94	116	22.0038
!!cccuuuuuuuuuuuuccc22	chr13:65167894-65168118(-)$1	224	49	71	23.8247
#dddduuuuuuuuuuuudddd]	chr12:104023421-104023644(-)$1	223	130	152	22.4620
"""bbtttttttttttbb333d	chr16:8855984-8856214(+)$1	230	197	219	20.9928
c[bbwwwwwwwwwwwwwwbb33	chr3:108795530-108795760(-)$1	230	180	202	21.8104
""bbwwwwwwwwwwwwwwbb33	chr1:36160687-36160920(+)$1	233	185	207	21.9766
$dddduuuuuuuuuuuudddd8	chr9:62645272-62645508(-)$1	236	63	85	21.8176
!cccvvvvvvvvvvvvvccc44	chr15:98692895-98693126(-)$1	231	148	170	23.5184
bbyyyyyyyyyyyyyyyybb33	chr16:17469193-17469426(+)$1	233	112	134	19.6782
!!cccwwwwwwwwwwwwwwccc	chr13:112223725-112223954(-)$1	229	160	182	22.3837
fffffuuuuuuuuuuuufffff	chr11:98661550-98661797(+)$1	247	30	52	22.0019
[ddddvvvvvvvvvvvvvdddd	chr3:65357114-65357344(+)$1	230	29	51	22.3034
eeeeeuuuuuuuuuuuueeeee	chr8:108187627-108187857(+)$1	230	78	100	22.1427
$$$bbvvvvvvvvvvvvvbb33	chr11:69493686-69493905(-)$1	219	40	62	22.3939
####bbtttttttttttbb22b	chr2:25036816-25037074(+)$1	258	200	222	20.6802
eeewwwwwwwwwwwwwweeeee	chr3:152091582-152091810(+)$1	228	164	186	20.7830
eeeevvvvvvvvvvvvveeeee	chr17:88386170-88386403(+)$1	233	196	218	22.0445
hhhhvvvvvvvvvvvvvhhhhh	chr2:167515142-167515371(+)$1	229	168	190	21.1394
""cccuuuuuuuuuuuuccc33	chrX:91518659-91518894(+)$1	235	20	42	24.1258
bbcccuuuuuuuuuuuuccc]b	chr15:102840176-102840396(+)$1	220	15	37	22.7512
fffffuuuuuuuuuuuufffff	chr7:87225861-87226084(+)$1	223	37	59	22.0019
:ddddvvvvvvvvvvvvvdddd	chr7:134754676-134754903(-)$1	227	6	28	21.1760
eeeewwwwwwwwwwwwwweeee	chr19:12844771-12844993(-)$1	222	88	110	21.3186
[eeeeettttttttttteeeee	chr8:9973650-9973878(-)$1	228	6	28	21.1102
""cccuuuuuuuuuuuuccc33	chrX:91518599-91518846(+)$1	247	80	102	24.1258
d!!ccctttttttttttccc22	chr12:53617276-53617532(+)$1	256	155	177	22.2038
iiiiiuuuuuuuuuuuuiiiii	chr9:61907918-61908154(-)$1	236	105	127	23.1391
fffffwwwwwwwwwwwwwwfff	chr7:125355930-125356177(-)$1	247	27	49	20.9045
[ddddwwwwwwwwwwwwwwddd	chr15:53176077-53176324(-)$1	247	192	214	21.1954
acccvvvvvvvvvvvvvccc]a	chr10:52137446-52137674(+)$1	228	195	217	23.1953
c!!bbvvvvvvvvvvvvvbb22	chr10:39231452-39231677(+)$1	225	190	212	22.5813
$$cccuuuuuuuuuuuuccc55	chr1:179378399-179378622(+)$1	223	173	195	21.9716
!ddddvvvvvvvvvvvvvdddd	chr11:95611179-95611403(+)$1	224	18	40	22.3324
ggggguuuuuuuuuuuuggggg	chr6:13956193-13956424(+)$1	231	157	179	22.8646
iiiiiwwwwwwwwwwwwwwiii	chr2:155231452-155231683(-)$1	231	143	165	21.8822
fffffwwwwwwwwwwwwwwfff	chr17:43224704-43224927(+)$1	223	157	179	20.9045
iiiivvvvvvvvvvvvviiiii	chr9:88351220-88351457(-)$1	237	107	129	22.9259
hhhhvvvvvvvvvvvvvhhhhh	chr7:29208373-29208608(-)$1	235	52	74	21.1394
eeeeeyyyyyyyyyyyyyyyye	chr7:100006841-100007066(-)$1	225	24	46	19.1294
[dddduuuuuuuuuuuudddd3	chr2:172182614-172182842(-)$1	228	21	43	22.6009
======ttttttttttt=====	chr12:70473972-70474249(+)$1	277	141	163	21.9997
cccyyyyyyyyyyyyyyyyccc	chr11:96135969-96136205(+)$1	236	17	39	20.3625
eyyyyyyyyyyyyyyyyeeeee	chr15:81150075-81150297(-)$1	222	98	120	18.9528
::cccuuuuuuuuuuuuccc::	chr11:86133140-86133381(-)$1	241	143	165	19.6223
fffffuuuuuuuuuuuufffff	chr10:41994596-41994827(-)$1	231	157	179	22.0019
cc[bbuuuuuuuuuuuubb]cc	chr13:107754329-107754551(-)$1	222	9	31	22.3779
ggggggtttttttttttggggg	chr16:91659498-91659729(+)$1	231	81	103	21.4443
[ddddwwwwwwwwwwwwwwddd	chr17:66334025-66334249(-)$1	224	128	150	21.1954
::cccuuuuuuuuuuuucccee	chr12:60173659-60173893(+)$1	234	131	153	21.4286
fffffuuuuuuuuuuuufffff	chr9:106740544-106740779(+)$1	235	78	100	22.0019
======ttttttttttt=====	chr12:70474109-70474384(+)$1	275	4	26	21.9997
$$ccctttttttttttccc444	chr11:75316699-75316950(+)$1	251	123	145	21.7457
b[awwwwwwwwwwwwwwa]bb5	chr17:75937827-75938050(-)$1	223	75	97	20.2726
a[cccvvvvvvvvvvvvvccc]	chr6:119430326-119430556(+)$1	230	65	87	23.5694
ggggggtttttttttttggggg	chr7:130313712-130313937(+)$1	225	146	168	21.4443
!!ddddtttttttttttdddd2	chr1:46892606-46892838(-)$1	232	129	151	21.3604
d[cccvvvvvvvvvvvvvccc]	chr2:30676099-30676319(+)$1	220	86	108	23.3283
hhhhhwwwwwwwwwwwwwwhhh	chr2:155922939-155923164(-)$1	225	26	48	20.2888
####bbtttttttttttbb444	chr16:32679807-32680037(+)$1	230	76	98	21.4035
cccyyyyyyyyyyyyyyyyccc	chr11:96135935-96136163(+)$1	228	51	73	20.3625
fffffftttttttttttfffff	chr4:55022259-55022480(+)$1	221	90	112	20.6777
hhh[auuuuuuuuuuuua]hhh	chr13:17810093-17810323(-)$1	230	162	184	22.1660
eeeevvvvvvvvvvvvveeeee	chr11:86531364-86531584(-)$1	220	88	110	22.0445
fffffftttttttttttfffff	chr5:136410152-136410381(-)$1	229	59	81	20.6777
eeeevvvvvvvvvvvvveeeee	chr15:102239929-102240179(+)$1	250	65	87	22.0445
##cccyyyyyyyyyyyyyyyyc	chr2:72776295-72776520(-)$1	225	23	45	20.1148

#otherMatches

#Seq PSSM
UUCCUCCUGCUCCCCGUGGAGU	chr2:34630984-34631236(+)$1	252	143	165	21.1394
UUGCUGAAGAGGAUGAGGAGGG	chr11:82578626-82578854(+)$1	228	94	116	22.0038
GAGUUCAAAAACAUAACAACAG	chr13:65167894-65168118(-)$1	224	49	71	23.8247
ACAGACCUCCUUCCCAUUCUGC	chr12:104023421-104023644(-)$1	223	130	152	22.4620
CAACAUAUACUAUUAUUGCAAA	chr16:8855984-8856214(+)$1	230	197	219	20.9928
UACCAAAAAUACAAGACAGGAC	chr3:108795530-108795760(-)$1	230	180	202	21.8104
AUGACUAUGCCAAGGACCUCUU	chr1:36160687-36160920(+)$1	233	185	207	21.9766
CGUGAACCACACCACAGUCACU	chr9:62645272-62645508(-)$1	236	63	85	21.8176
CGAGACACCUAUCAGCCCUCCA	chr15:98692895-98693126(-)$1	231	148	170	23.5184
AGACCACAACUCCUCUACCUAC	chr16:17469193-17469426(+)$1	233	112	134	19.6782
GAGGAUGAAAUGAGAGAAUUCC	chr13:112223725-112223954(-)$1	229	160	182	22.3837
GGAAGAUUUGCCGUACCUUUCC	chr11:98661550-98661797(+)$1	247	30	52	22.0019
AGCACAACUUUGAUCCCCGUGU	chr3:65357114-65357344(+)$1	230	29	51	22.3034
CUUUCAUUAAAGGAAAAGAAAG	chr8:108187627-108187857(+)$1	230	78	100	22.1427
GAACCAUCUCUCACCCCAGGAA	chr11:69493686-69493905(-)$1	219	40	62	22.3939
CUCUGCUGUACCUUCCCGCCAA	chr2:25036816-25037074(+)$1	258	200	222	20.6802
GAUGUUUAUUACUUUGAAUCAG	chr3:152091582-152091810(+)$1	228	164	186	20.7830
CCUAGCUAUGUUUAAUAUGGGU	chr17:88386170-88386403(+)$1	233	196	218	22.0445
CUGCAGAAGAAGGUGGAGCAGC	chr2:167515142-167515371(+)$1	229	168	190	21.1394
ACCCAGAUGAAAAUAAGUGGAA	chrX:91518659-91518894(+)$1	235	20	42	24.1258
UCCCUUUUAUUCGCCACAGGAG	chr15:102840176-102840396(+)$1	220	15	37	22.7512
GGAUUAGCAGUAUUAACGGUCC	chr7:87225861-87226084(+)$1	223	37	59	22.0019
ACCACCAGCGUAUCCACCGUGG	chr7:134754676-134754903(-)$1	227	6	28	21.1760
UGGCACACAAAGCAAAAAGCCA	chr19:12844771-12844993(-)$1	222	88	110	21.3186
CUUUGUUUUAAAUGUUUAUAAA	chr8:9973650-9973878(-)$1	228	6	28	21.1102
ACCCAGAUGAAAAUAAGUGGAA	chrX:91518599-91518846(+)$1	247	80	102	24.1258
AGUAAACAAUGAUCACUUUUUA	chr12:53617276-53617532(+)$1	256	155	177	22.2038
CAUGGAAUCUCUUAAAGCCAUG	chr9:61907918-61908154(-)$1	236	105	127	23.1391
CUGUUAGCUGAGGGAAUGAAAC	chr7:125355930-125356177(-)$1	247	27	49	20.9045
AUGCUGGUAUUCAAGGGGAAGC	chr15:53176077-53176324(-)$1	247	192	214	21.1954
CCUGGAACUGGAUCUGGCGGCG	chr10:52137446-52137674(+)$1	228	195	217	23.1953
UAUGGCACAGACCCCACCCCUC	chr10:39231452-39231677(+)$1	225	190	212	22.5813
UCCAGUACUCGCACAACCUGAG	chr1:179378399-179378622(+)$1	223	173	195	21.9716
CGUAGGAAAAGUGCAGAGCUAC	chr11:95611179-95611403(+)$1	224	18	40	22.3324
UUAACUAAACUACAUUUGUUAA	chr6:13956193-13956424(+)$1	231	157	179	22.8646
CAGGGCUAGAGAUCACAACUCC	chr2:155231452-155231683(-)$1	231	143	165	21.8822
CAAGAAGCCAGCCAGACCCUCU	chr17:43224704-43224927(+)$1	223	157	179	20.9045
GGUAGAGGAGCAAGGGGUGCUG	chr9:88351220-88351457(-)$1	237	107	129	22.9259
GGGUCACCCGUACCCAAGCCCG	chr7:29208373-29208608(-)$1	235	52	74	21.1394
CCUUGCAAAGCAUAUCACCCUC	chr7:100006841-100007066(-)$1	225	24	46	19.1294
AGUGAGCGCUCAUCACAUCACC	chr2:172182614-172182842(-)$1	228	21	43	22.6009
AUGAGGGACGCCAUCAUCCUCA	chr12:70473972-70474249(+)$1	277	141	163	21.9997
CUGUCCCUACACCAAAUACCAG	chr11:96135969-96136205(+)$1	236	17	39	20.3625
GGAAUAAUGGGACUCUACAAAG	chr15:81150075-81150297(-)$1	222	98	120	18.9528
CUGGCAAAUUCACCUCAGCCUC	chr11:86133140-86133381(-)$1	241	143	165	19.6223
GCCCUACUUCAAGGAUAAGGGC	chr10:41994596-41994827(-)$1	231	157	179	22.0019
GAUAGAAGAUGAAAAGGCUCUC	chr13:107754329-107754551(-)$1	222	9	31	22.3779
GUAUCUGUAACUACUCAAGAUA	chr16:91659498-91659729(+)$1	231	81	103	21.4443
CGGAAUCUCAGUUGUCAUUUUC	chr17:66334025-66334249(-)$1	224	128	150	21.1954
AAGGCGUUAAUGAAGAAGCCAG	chr12:60173659-60173893(+)$1	234	131	153	21.4286
UCGGAACCCCUUUUGCCUCUGG	chr9:106740544-106740779(+)$1	235	78	100	22.0019
AUGAGGGACGCCAUCAUCCUCA	chr12:70474109-70474384(+)$1	275	4	26	21.9997
UGGCCAAGAUCAUGAAGGCAAA	chr11:75316699-75316950(+)$1	251	123	145	21.7457
GAGGAAGAGGAAAUAAACAUCA	chr17:75937827-75938050(-)$1	223	75	97	20.2726
AGAGCCUUAAUCUCCGCAGCUG	chr6:119430326-119430556(+)$1	230	65	87	23.5694
GGUUCAGUACAAAAUAAUGAAC	chr7:130313712-130313937(+)$1	225	146	168	21.4443
GAGAUCAAAGUCGUUGAGAUUA	chr1:46892606-46892838(-)$1	232	129	151	21.3604
GCUCCUAUGACGUGAUCUGGAU	chr2:30676099-30676319(+)$1	220	86	108	23.3283
GAAAAUGAUGUCAGAGAGUUUU	chr2:155922939-155923164(-)$1	225	26	48	20.2888
CGCUGCCCCCGCCCCCUGCCUA	chr16:32679807-32680037(+)$1	230	76	98	21.4035
CUGUCCCUACACCAAAUACCAG	chr11:96135935-96136163(+)$1	228	51	73	20.3625
GAGCUCAUUAAAACUCGGGGCU	chr4:55022259-55022480(+)$1	221	90	112	20.6777
CAUAGAUUUGAAUAUAGCCAUG	chr13:17810093-17810323(-)$1	230	162	184	22.1660
UCAGGCGGCUUGCAAGACUGGG	chr11:86531364-86531584(-)$1	220	88	110	22.0445
UCGGUUUCCUUCUUUCCAGCCG	chr5:136410152-136410381(-)$1	229	59	81	20.6777
CAGCUGCCUCCAUUCCUGCUGG	chr15:102239929-102240179(+)$1	250	65	87	22.0445
GACCAUAUUAAUCUGAAAAAUU	chr2:72776295-72776520(-)$1	225	23	45	20.1148

#DB
((((.............)))))	chr2:34630984-34631236(+)$1	1	143	165	21.1394
((.((.............)).)	chr11:82578626-82578854(+)$1	1	94	116	22.0038
..(((............)))..	chr13:65167894-65168118(-)$1	1	49	71	23.8247
.((((............)))).	chr12:104023421-104023644(-)$1	1	130	152	22.4620
...((...........))...)	chr16:8855984-8856214(+)$1	1	197	219	20.9928
(.((..............))..	chr3:108795530-108795760(-)$1	1	180	202	21.8104
..((..............))..	chr1:36160687-36160920(+)$1	1	185	207	21.9766
.((((............)))).	chr9:62645272-62645508(-)$1	1	63	85	21.8176
.(((.............)))..	chr15:98692895-98693126(-)$1	1	148	170	23.5184
((................))..	chr16:17469193-17469426(+)$1	1	112	134	19.6782
..(((..............)))	chr13:112223725-112223954(-)$1	1	160	182	22.3837
(((((............)))))	chr11:98661550-98661797(+)$1	1	30	52	22.0019
.((((.............))))	chr3:65357114-65357344(+)$1	1	29	51	22.3034
(((((............)))))	chr8:108187627-108187857(+)$1	1	78	100	22.1427
...((.............))..	chr11:69493686-69493905(-)$1	1	40	62	22.3939
....((...........))..)	chr2:25036816-25037074(+)$1	1	200	222	20.6802
(((..............)))))	chr3:152091582-152091810(+)$1	1	164	186	20.7830
((((.............)))))	chr17:88386170-88386403(+)$1	1	196	218	22.0445
((((.............)))))	chr2:167515142-167515371(+)$1	1	168	190	21.1394
..(((............)))..	chrX:91518659-91518894(+)$1	1	20	42	24.1258
(((((............))).)	chr15:102840176-102840396(+)$1	1	15	37	22.7512
(((((............)))))	chr7:87225861-87226084(+)$1	1	37	59	22.0019
.((((.............))))	chr7:134754676-134754903(-)$1	1	6	28	21.1760
((((..............))))	chr19:12844771-12844993(-)$1	1	88	110	21.3186
.(((((...........)))))	chr8:9973650-9973878(-)$1	1	6	28	21.1102
..(((............)))..	chrX:91518599-91518846(+)$1	1	80	102	24.1258
(..(((...........)))..	chr12:53617276-53617532(+)$1	1	155	177	22.2038
(((((............)))))	chr9:61907918-61908154(-)$1	1	105	127	23.1391
(((((..............)))	chr7:125355930-125356177(-)$1	1	27	49	20.9045
.((((..............)))	chr15:53176077-53176324(-)$1	1	192	214	21.1954
((((.............))).)	chr10:52137446-52137674(+)$1	1	195	217	23.1953
(..((.............))..	chr10:39231452-39231677(+)$1	1	190	212	22.5813
..(((............)))..	chr1:179378399-179378622(+)$1	1	173	195	21.9716
.((((.............))))	chr11:95611179-95611403(+)$1	1	18	40	22.3324
(((((............)))))	chr6:13956193-13956424(+)$1	1	157	179	22.8646
(((((..............)))	chr2:155231452-155231683(-)$1	1	143	165	21.8822
(((((..............)))	chr17:43224704-43224927(+)$1	1	157	179	20.9045
((((.............)))))	chr9:88351220-88351457(-)$1	1	107	129	22.9259
((((.............)))))	chr7:29208373-29208608(-)$1	1	52	74	21.1394
(((((................)	chr7:100006841-100007066(-)$1	1	24	46	19.1294
.((((............)))).	chr2:172182614-172182842(-)$1	1	21	43	22.6009
((((((...........)))))	chr12:70473972-70474249(+)$1	1	141	163	21.9997
(((................)))	chr11:96135969-96136205(+)$1	1	17	39	20.3625
(................)))))	chr15:81150075-81150297(-)$1	1	98	120	18.9528
..(((............)))..	chr11:86133140-86133381(-)$1	1	143	165	19.6223
(((((............)))))	chr10:41994596-41994827(-)$1	1	157	179	22.0019
((.((............)).))	chr13:107754329-107754551(-)$1	1	9	31	22.3779
((((((...........)))))	chr16:91659498-91659729(+)$1	1	81	103	21.4443
.((((..............)))	chr17:66334025-66334249(-)$1	1	128	150	21.1954
..(((............)))((	chr12:60173659-60173893(+)$1	1	131	153	21.4286
(((((............)))))	chr9:106740544-106740779(+)$1	1	78	100	22.0019
((((((...........)))))	chr12:70474109-70474384(+)$1	1	4	26	21.9997
..(((...........)))...	chr11:75316699-75316950(+)$1	1	123	145	21.7457
(.(..............).)).	chr17:75937827-75938050(-)$1	1	75	97	20.2726
(.(((.............))).	chr6:119430326-119430556(+)$1	1	65	87	23.5694
((((((...........)))))	chr7:130313712-130313937(+)$1	1	146	168	21.4443
..((((...........)))).	chr1:46892606-46892838(-)$1	1	129	151	21.3604
(.(((.............))).	chr2:30676099-30676319(+)$1	1	86	108	23.3283
(((((..............)))	chr2:155922939-155923164(-)$1	1	26	48	20.2888
....((...........))...	chr16:32679807-32680037(+)$1	1	76	98	21.4035
(((................)))	chr11:96135935-96136163(+)$1	1	51	73	20.3625
((((((...........)))))	chr4:55022259-55022480(+)$1	1	90	112	20.6777
(((.(............).)))	chr13:17810093-17810323(-)$1	1	162	184	22.1660
((((.............)))))	chr11:86531364-86531584(-)$1	1	88	110	22.0445
((((((...........)))))	chr5:136410152-136410381(-)$1	1	59	81	20.6777
((((.............)))))	chr15:102239929-102240179(+)$1	1	65	87	22.0445
..(((................)	chr2:72776295-72776520(-)$1	1	23	45	20.1148

#PSSM
f : 0.11	e : 0.11	h : 0.08	! : 0.07	c : 0.07	[ : 0.07	# : 0.05	" : 0.05	$ : 0.05	b : 0.04	: : 0.04	i : 0.04	g : 0.04	d : 0.02	a : 0.02	= : 0.02	
d : 0.11	f : 0.11	e : 0.11	h : 0.08	! : 0.07	c : 0.07	" : 0.05	[ : 0.05	$ : 0.04	# : 0.04	i : 0.04	g : 0.04	b : 0.02	= : 0.02	: : 0.02	y : 0.01	
c : 0.23	d : 0.13	f : 0.11	e : 0.11	h : 0.07	i : 0.04	g : 0.04	[ : 0.02	b : 0.02	y : 0.02	# : 0.02	! : 0.02	= : 0.02	" : 0.01	$ : 0.01	a : 0.01	
c : 0.22	d : 0.13	f : 0.11	b : 0.10	e : 0.10	h : 0.05	y : 0.05	i : 0.04	g : 0.04	# : 0.02	w : 0.02	= : 0.02	[ : 0.01	
c : 0.19	v : 0.13	d : 0.13	f : 0.11	b : 0.10	w : 0.07	y : 0.05	e : 0.04	g : 0.04	i : 0.02	= : 0.02	h : 0.01	a : 0.01	
u : 0.28	v : 0.25	w : 0.17	y : 0.08	t : 0.02	b : 0.02	= : 0.02	g : 0.02	f : 0.02	e : 0.01	c : 0.01	d : 0.01	
u : 0.28	v : 0.25	t : 0.19	w : 0.17	y : 0.08	
u : 0.28	v : 0.25	t : 0.19	w : 0.17	y : 0.08	
u : 0.28	v : 0.25	t : 0.19	w : 0.17	y : 0.08	
u : 0.28	v : 0.25	t : 0.19	w : 0.17	y : 0.08	
u : 0.28	v : 0.25	t : 0.19	w : 0.17	y : 0.08	
u : 0.28	v : 0.25	t : 0.19	w : 0.17	y : 0.08	
u : 0.28	v : 0.25	t : 0.19	w : 0.17	y : 0.08	
u : 0.28	v : 0.25	t : 0.19	w : 0.17	y : 0.08	
u : 0.28	v : 0.25	t : 0.19	w : 0.17	y : 0.08	
u : 0.28	v : 0.25	t : 0.19	w : 0.17	y : 0.08	
u : 0.28	v : 0.25	w : 0.17	t : 0.16	y : 0.08	b : 0.01	c : 0.01	
c : 0.16	w : 0.14	v : 0.11	e : 0.10	f : 0.08	y : 0.07	d : 0.05	b : 0.05	h : 0.04	g : 0.04	i : 0.02	= : 0.02	a : 0.02	
c : 0.19	b : 0.13	e : 0.11	d : 0.10	w : 0.10	f : 0.08	y : 0.05	h : 0.04	g : 0.04	i : 0.02	= : 0.02	] : 0.02	3 : 0.01	
c : 0.22	d : 0.13	f : 0.11	e : 0.11	b : 0.10	h : 0.07	i : 0.04	g : 0.04	y : 0.02	= : 0.02	4 : 0.02	3 : 0.01	2 : 0.01	] : 0.01	
d : 0.13	e : 0.13	f : 0.11	3 : 0.10	c : 0.08	h : 0.07	2 : 0.05	] : 0.04	4 : 0.04	i : 0.04	g : 0.04	y : 0.02	= : 0.02	5 : 0.01	: : 0.01	b : 0.01	
e : 0.14	f : 0.11	3 : 0.10	h : 0.08	d : 0.08	c : 0.07	2 : 0.05	] : 0.04	4 : 0.04	i : 0.04	g : 0.04	b : 0.02	5 : 0.02	= : 0.02	8 : 0.01	a : 0.01	: : 0.01	

#score	1455.5678104522362
#seq	67
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_UTR_m3_run1.txt

#BEAR
eee[bb!!eeeeeqqqqqqqqeeeee22bb]eeee	chr2:72775997-72776225(-)$1	228	169	204	14.2209
eeeee[ffffffrrrrrrrrrffffffeeeee444	chr2:168006794-168007030(-)$1	236	188	223	12.8713
hhh[ccc!!cccrrrrrrrrrccc]ccc]hhhhhh	chr9:88346323-88346548(-)$1	225	80	115	13.3529
ggggg[ccc[cccqqqqqqqqcccccc]ggggggg	chr9:88345990-88346229(-)$1	239	178	213	16.0965
=====ccc[bbrrrrrrrrrbb]ccc]========	chr5:108536521-108536750(+)$1	229	112	147	13.0393
c[bb!!a[eeeeexxxxxxxxxxxxxxxeeeee]a	chr6:35462030-35462272(-)$1	242	127	162	11.6134
[ccc[eeeee[bbrrrrrrrrrbbeeeee22ccc3	chrX:48357704-48357939(-)$1	235	38	73	13.1932
""eeeee[bb[bbqqqqqqqqbb]bbeeeee]eee	chr13:64234940-64235174(-)$1	234	106	141	13.2059
hh"""bb[cccrrrrrrrrrcccbb333hhhhhhh	chr13:110744773-110745000(+)$1	227	166	201	11.6162
:dddd[gggggggqqqqqqqqggggggg333dddd	chr5:122773234-122773464(+)$1	230	136	171	13.7014
ddd[bb!!eeeeeqqqqqqqqeeeee22bbdddd:	chr10:36854953-36855186(-)$1	233	157	192	12.7731
ff[ccc[ffffffrrrrrrrrrffffff333cccf	chr2:37230567-37230799(-)$1	232	37	72	14.3409
eeee!!ffffffrrrrrrrrrffffff333eeeee	chr11:94076627-94076869(+)$1	242	14	49	14.1005
:ggggggg!!cccqqqqqqqqccc22ggggggg::	chr11:87862980-87863229(+)$1	249	158	193	12.5134
dd$$$$$ffffffqqqqqqqqffffff]dddd]gg	chr18:42500887-42501116(+)$1	229	68	103	14.3269
gggggggeeeeerrrrrrrrreeeee4444ggggg	chr15:102262256-102262479(+)$1	223	36	71	14.6644
"""dddd!!ddddqqqqqqqqdddd]dddd22hhh	chr6:87793711-87793940(-)$1	229	66	101	12.4692
[bb"""ccc"""aqqqqqqqqa333ccc22bb]ff	chr11:87895395-87895619(+)$1	224	91	126	14.3248
ccc[cccffffffrrrrrrrrrffffff22ccc]c	chr10:117251927-117252155(-)$1	228	167	202	14.0037
dddd[bbeeeeerrrrrrrrreeeee]bb]dddd]	chr2:6528836-6529062(-)$1	226	150	185	12.1630
eeeeeeeeee[bbqqqqqqqqbb]eeeee]eeeee	chr2:73655543-73655769(-)$1	226	24	59	13.9516
gggg"""ddddbbqqqqqqqqbb333dddd333gg	chr16:94915111-94915334(+)$1	223	154	189	14.9027
iiiiiiiieeeeeqqqqqqqqeeeeegggggggdd	chr4:147991352-147991575(-)$1	223	116	151	15.8108
ii"""gggggggrrrrrrrrrggggggg22iiiii	chr18:39572481-39572725(-)$1	244	137	172	14.7087
gggggg[ccc[bbrrrrrrrrrbb]cccggggggg	chr11:96178399-96178623(+)$1	224	159	194	14.1461
gggg[a[ffffffssssssssssffffffa]gggg	chr16:94915011-94915237(+)$1	226	40	75	12.8944
c[bb####eeeeesssssssssseeeee22bb]cc	chr6:35459796-35460026(-)$1	230	164	199	12.0373
ff"""ccc"""bbqqqqqqqqbb4444ccc]ffff	chr15:81481671-81481926(+)$1	255	9	44	14.3529
iiiiiigggggggqqqqqqqqggggggg>>>>>>>	chr2:37230278-37230504(-)$1	226	48	83	13.9013
gggggg[ffffffqqqqqqqqffffff]ggggggg	chr2:25037894-25038125(+)$1	231	125	160	16.2867
''eeeee[eeeeerrrrrrrrreeeeeeeeeehhh	chr16:91678485-91678709(+)$1	224	129	164	11.6577
""dddd[ffffffqqqqqqqqffffff]dddd444	chr6:21923766-21923996(+)$1	230	42	77	14.3642
g[ccc[a[eeeeeqqqqqqqqeeeee]a]ccc22g	chr4:107086722-107086953(+)$1	231	89	124	15.8356
:iiiiiiiii[bbqqqqqqqqbbiiiiiiiii::d	chr2:44843729-44843979(-)$1	250	137	172	12.5861
c!!ccc[ffffffqqqqqqqqffffff]ccc22cc	chr15:80770017-80770245(+)$1	228	40	75	15.6427
g[dddd!!bb[bbqqqqqqqqbb]bb]ddddgggg	chr3:103757497-103757723(+)$1	226	152	187	13.9419
iiiii$$$$$cccpppppppccc4444iiiiiiii	chr7:121408023-121408256(-)$1	233	149	184	11.5724
e[eeeee!!cccrrrrrrrrrccc333eeeeeeee	chr15:103024970-103025203(-)$1	233	192	227	13.5136
:==========ssssssssss==========bb[h	chr11:65502053-65502320(-)$1	267	135	170	11.2918
!!bb####eeeeeqqqqqqqqeeeee22bb22ccc	chr9:71692504-71692735(-)$1	231	13	48	14.8677
c[ccc!!ffffffrrrrrrrrrffffff22ccc]c	chr2:104505289-104505517(+)$1	228	191	226	14.6637
c[ffffff[cccrrrrrrrrrccc]ffffff]ccc	chr11:87864722-87864948(+)$1	226	168	203	13.1702
g[ccc[ccc[cccpppppppccc]ccc]ccc]ggg	chr2:131879228-131879454(-)$1	226	60	95	12.0606
dd[ccc[ccc[bbqqqqqqqqbb]cccccc]dddd	chr3:65752580-65752811(-)$1	231	172	207	14.4672
=======[eeeeeqqqqqqqqeeeee]========	chr1:56853065-56853292(-)$1	227	22	57	17.0179
iccc!!a[ccc[aqqqqqqqqa]ccc]a4444ccc	chr3:103767911-103768141(+)$1	230	53	88	16.0340
gg[bbcccxxxxxxxxxxxxxxxccc]bb]ggggg	chr13:34993398-34993627(+)$1	229	162	197	11.5937
iiiiiiii!!cccqqqqqqqqccc]iiiiiiiii:	chr11:87897014-87897242(+)$1	228	4	39	15.3673
gggg####eeeeesssssssssseeeee22ggggg	chr12:3248669-3248902(-)$1	233	146	181	13.2807

#otherMatches

#Seq PSSM
GUUCUUAGAUAUCUUUUUAUUGAUGUGCAAAAAUU	chr2:72775997-72776225(-)$1	228	169	204	14.2209
GUAUUAUAGAAUUUUUUUCUUGUUCUGAGUAUCCU	chr2:168006794-168007030(-)$1	236	188	223	12.8713
GAUAAUGGGUGCAGUUUUUGAGCAAUAUAAUCAGA	chr9:88346323-88346548(-)$1	225	80	115	13.3529
AGGAAAGGAUCUUUAAUAGUCAAGUCCCUUCCUUG	chr9:88345990-88346229(-)$1	239	178	213	16.0965
UGGGAAUGGGCAGCUUUGGAGUAUAUAUCCCAUAA	chr5:108536521-108536750(+)$1	229	112	147	13.0393
UGCCAGCUUCUUCAGCUAAAUACUUUAAGAGGGUG	chr6:35462030-35462272(-)$1	242	127	162	11.6134
ACUCGGAUUCACUUAGGAUCACAGGAAUCAGGGGA	chrX:48357704-48357939(-)$1	235	38	73	13.1932
AUGAGGACAUACUUUAAAAAUGGAAUUCCUCUGUA	chr13:64234940-64235174(-)$1	234	106	141	13.2059
AAUAUAGUCUCGUCAUCAUAGAGCUCGUUUAUGGA	chr13:110744773-110745000(+)$1	227	166	201	11.6162
UGUAUUAUAAAAAAAUCACUAUUUUUAUCACAUGC	chr5:122773234-122773464(+)$1	230	136	171	13.7014
UUGAUAUCCUUCAGAAGCACAUGAAGUUUGCAAGU	chr10:36854953-36855186(-)$1	233	157	192	12.7731
UAACAGCUGAAAGGAGGCUCAGCUUUCAAAUCUGU	chr2:37230567-37230799(-)$1	232	37	72	14.3409
UUGCUAUAUAUUAUGGAAGAAAAUGUAAUCGUAAA	chr11:94076627-94076869(+)$1	242	14	49	14.1005
UGUUGUAUACAGUUUUCCUUUACUCAGUACAAUCU	chr11:87862980-87863229(+)$1	249	158	193	12.5134
GUAUAUAGGAGAUAUUGUUGGAUUUCUAACUGUUU	chr18:42500887-42501116(+)$1	229	68	103	14.3269
ACUUUAGUUCCAGCAACAGAGUGGAAAAGCCUGAA	chr15:102262256-102262479(+)$1	223	36	71	14.6644
UCUGCAUUUAACUACAAAAAAAGUUUAUGUUUAGU	chr6:87793711-87793940(-)$1	229	66	101	12.4692
GUAUAUGUGUAACUUAUCACUGGACCACUUUAGUU	chr11:87895395-87895619(+)$1	224	91	126	14.3248
CAAAUAUACAGGUUUAGUAUCUGCCUGUUAGUGAU	chr10:117251927-117252155(-)$1	228	167	202	14.0037
CCCUUUCUUUGUUUUCUUUGUGCAAAUGAUGGGGA	chr2:6528836-6529062(-)$1	226	150	185	12.1630
AUUGCUUGAAUGUUUAACGAUGCCUUCAGUGUGAU	chr2:73655543-73655769(-)$1	226	24	59	13.9516
CUUGUACUGGACAGAAUAGAUUGACAUCUAAUUCA	chr16:94915111-94915334(+)$1	223	154	189	14.9027
AGAGAUGUGUCACUCAAUCCUGUGGCUUUGGUGAG	chr4:147991352-147991575(-)$1	223	116	151	15.8108
GUACAUGCAAUUUAUUAACAUGAUUGUAAAAUAGC	chr18:39572481-39572725(-)$1	244	137	172	14.7087
AAUAUGUAGUUGACAUAAACACUCCGCUCAUAUUC	chr11:96178399-96178623(+)$1	224	159	194	14.1461
AAUUUUACAAAAAUUUAUUUUCUUUUUUGAUAAUU	chr16:94915011-94915237(+)$1	226	40	75	12.8944
GAAUAAAUGAAGCUAAAAUGUCUGCUUUUGGUACA	chr6:35459796-35460026(-)$1	230	164	199	12.0373
CAACUGAGGUCUGAAGCCAACCAUAUGCUCCUGCC	chr15:81481671-81481926(+)$1	255	9	44	14.3529
AACUGAGCCAUUUCCUAUUUUAAAUGGCUUCUACA	chr2:37230278-37230504(-)$1	226	48	83	13.9013
GCCAAGUUUUAGGUGUAUUUUUUUGAAUCUUGGUU	chr2:25037894-25038125(+)$1	231	125	160	16.2867
UCCUUAAUGUUGUAAAUAUUUCACAAUUUAAGACA	chr16:91678485-91678709(+)$1	224	129	164	11.6577
CACUUAGAGGAUUACAGAGACAAUCCUAUAAGAUC	chr6:21923766-21923996(+)$1	230	42	77	14.3642
UGCUUGCUUUGAAAACUAUACUUUAAUGGGAGAAA	chr4:107086722-107086953(+)$1	231	89	124	15.8356
CUGUGUUUAAUAGCAUUUAUACUUUAAGCACAACU	chr2:44843729-44843979(-)$1	250	137	172	12.5861
ACCUCUAGUGUGCUCACAGAUGUGCACAAGAUCUG	chr15:80770017-80770245(+)$1	228	40	75	15.6427
UAUUUCCCAGAGUUCCUAGAUAUGCUAGAAGAAUC	chr3:103757497-103757723(+)$1	226	152	187	13.9419
UUUGUUUUUAAGUAGUUUCAACUGUACAUGGAAGC	chr7:121408023-121408256(-)$1	233	149	184	11.5724
UUAAUUACAGACAAUUUCAAAGUCAACUGAUUGUG	chr15:103024970-103025203(-)$1	233	192	227	13.5136
AAUGUAUCUUUAUUAAAACAAAAGGGUGUAUAGUG	chr11:65502053-65502320(-)$1	267	135	170	11.2918
GUGUUAAUCAGCUAAAACAGCAGUUGUUGCUAUGA	chr9:71692504-71692735(-)$1	231	13	48	14.8677
CUUACUGUUUGUUUUUAUUUAUGGCAGAAUGUAUG	chr2:104505289-104505517(+)$1	228	191	226	14.6637
ACUUCUAAAUUUAAAGAAAACAAAAUUGGAGUUGA	chr11:87864722-87864948(+)$1	226	168	203	13.1702
UGCCCAGGAUAAUAGUCACAGUUUUCCAGGGAGGG	chr2:131879228-131879454(-)$1	226	60	95	12.0606
AUCUACCUUGCAGCUAGAGCACUUCAAGUAAGUAU	chr3:65752580-65752811(-)$1	231	172	207	14.4672
auauguauauguacauaucucuauauuuacauaua	chr1:56853065-56853292(-)$1	227	22	57	17.0179
UGUAAACCGAUAGAAAAGUAACCAUCAGCAAAUAC	chr3:103767911-103768141(+)$1	230	53	88	16.0340
AUUUCUGCAGCAAAUUUGAGGAAGCAUGAUAUAUU	chr13:34993398-34993627(+)$1	229	162	197	11.5937
GUGUAAAAUAAUUUUAUAAAUGAUCUUUUGUACUU	chr11:87897014-87897242(+)$1	228	4	39	15.3673
GUGUUGUGGCUUGUCUUUCUAAUUAGGUAUAUAUC	chr12:3248669-3248902(-)$1	233	146	181	13.2807

#DB
(((.((..(((((........)))))..)).))))	chr2:72775997-72776225(-)$1	1	169	204	14.2209
(((((.((((((.........)))))))))))...	chr2:168006794-168007030(-)$1	1	188	223	12.8713
(((.(((..(((.........))).))).))))))	chr9:88346323-88346548(-)$1	1	80	115	13.3529
(((((.(((.(((........)))))).)))))))	chr9:88345990-88346229(-)$1	1	178	213	16.0965
((((((((.((.........)).))).))))))))	chr5:108536521-108536750(+)$1	1	112	147	13.0393
(.((..(.(((((...............))))).)	chr6:35462030-35462272(-)$1	1	127	162	11.6134
.(((.(((((.((.........)))))))..))).	chrX:48357704-48357939(-)$1	1	38	73	13.1932
..(((((.((.((........)).))))))).)))	chr13:64234940-64235174(-)$1	1	106	141	13.2059
((...((.(((.........)))))...)))))))	chr13:110744773-110745000(+)$1	1	166	201	11.6162
.((((.(((((((........)))))))...))))	chr5:122773234-122773464(+)$1	1	136	171	13.7014
(((.((..(((((........)))))..)))))).	chr10:36854953-36855186(-)$1	1	157	192	12.7731
((.(((.((((((.........))))))...))))	chr2:37230567-37230799(-)$1	1	37	72	14.3409
((((..((((((.........))))))...)))))	chr11:94076627-94076869(+)$1	1	14	49	14.1005
.(((((((..(((........)))..)))))))..	chr11:87862980-87863229(+)$1	1	158	193	12.5134
((.....((((((........)))))).)))).))	chr18:42500887-42501116(+)$1	1	68	103	14.3269
((((((((((((.........)))))....)))))	chr15:102262256-102262479(+)$1	1	36	71	14.6644
...((((..((((........)))).))))..)))	chr6:87793711-87793940(-)$1	1	66	101	12.4692
.((...(((...(........)...)))..)).))	chr11:87895395-87895619(+)$1	1	91	126	14.3248
(((.(((((((((.........))))))..))).)	chr10:117251927-117252155(-)$1	1	167	202	14.0037
((((.(((((((.........))))).)).)))).	chr2:6528836-6529062(-)$1	1	150	185	12.1630
((((((((((.((........)).))))).)))))	chr2:73655543-73655769(-)$1	1	24	59	13.9516
((((...((((((........))...))))...))	chr16:94915111-94915334(+)$1	1	154	189	14.9027
))))))))(((((........)))))(((((((((	chr4:147991352-147991575(-)$1	1	116	151	15.8108
((...(((((((.........)))))))..)))))	chr18:39572481-39572725(-)$1	1	137	172	14.7087
((((((.(((.((.........)).))))))))))	chr11:96178399-96178623(+)$1	1	159	194	14.1461
((((.(.((((((..........))))))).))))	chr16:94915011-94915237(+)$1	1	40	75	12.8944
(.((....(((((..........)))))..)).))	chr6:35459796-35460026(-)$1	1	164	199	12.0373
((...(((...((........))....))).))))	chr15:81481671-81481926(+)$1	1	9	44	14.3529
(((((((((((((........))))))).......	chr2:37230278-37230504(-)$1	1	48	83	13.9013
((((((.((((((........)))))).)))))))	chr2:25037894-25038125(+)$1	1	125	160	16.2867
..(((((.(((((.........)))))))))))))	chr16:91678485-91678709(+)$1	1	129	164	11.6577
..((((.((((((........)))))).))))...	chr6:21923766-21923996(+)$1	1	42	77	14.3642
(.(((.(.(((((........))))).).)))..)	chr4:107086722-107086953(+)$1	1	89	124	15.8356
.(((((((((.((........)))))))))))..(	chr2:44843729-44843979(-)$1	1	137	172	12.5861
(..(((.((((((........)))))).)))..))	chr15:80770017-80770245(+)$1	1	40	75	15.6427
(.((((..((.((........)).)).))))))))	chr3:103757497-103757723(+)$1	1	152	187	13.9419
(((((.....(((.......)))....))))))))	chr7:121408023-121408256(-)$1	1	149	184	11.5724
(.(((((..(((.........)))...))))))))	chr15:103024970-103025203(-)$1	1	192	227	13.5136
.((((((((((..........))))))))))((.(	chr11:65502053-65502320(-)$1	1	135	170	11.2918
..((....(((((........)))))..))..)))	chr9:71692504-71692735(-)$1	1	13	48	14.8677
(.(((..((((((.........))))))..))).)	chr2:104505289-104505517(+)$1	1	191	226	14.6637
(.((((((.(((.........))).)))))).)))	chr11:87864722-87864948(+)$1	1	168	203	13.1702
(.(((.(((.(((.......))).))).))).)))	chr2:131879228-131879454(-)$1	1	60	95	12.0606
((.(((.(((.((........)).)))))).))))	chr3:65752580-65752811(-)$1	1	172	207	14.4672
(((((((.(((((........))))).))))))))	chr1:56853065-56853292(-)$1	1	22	57	17.0179
((((..(.(((.(........).))).)....)))	chr3:103767911-103768141(+)$1	1	53	88	16.0340
((.(((((...............))).)).)))))	chr13:34993398-34993627(+)$1	1	162	197	11.5937
((((((((..(((........))).))))))))).	chr11:87897014-87897242(+)$1	1	4	39	15.3673
((((....(((((..........)))))..)))))	chr12:3248669-3248902(-)$1	1	146	181	13.2807

#PSSM
g : 0.22	c : 0.12	i : 0.12	e : 0.10	: : 0.08	d : 0.08	" : 0.06	h : 0.04	= : 0.04	[ : 0.04	f : 0.04	' : 0.02	! : 0.02	
g : 0.18	[ : 0.16	i : 0.12	d : 0.10	e : 0.08	= : 0.06	c : 0.06	" : 0.06	h : 0.04	f : 0.04	! : 0.04	b : 0.02	' : 0.02	
g : 0.16	e : 0.14	c : 0.12	d : 0.10	i : 0.10	b : 0.08	" : 0.08	= : 0.06	[ : 0.06	h : 0.02	$ : 0.02	! : 0.02	f : 0.02	
g : 0.16	c : 0.16	e : 0.12	d : 0.10	i : 0.10	[ : 0.08	b : 0.08	" : 0.08	= : 0.06	$ : 0.02	f : 0.02	
c : 0.16	e : 0.10	g : 0.10	" : 0.10	i : 0.10	d : 0.08	b : 0.06	= : 0.06	! : 0.06	[ : 0.06	# : 0.06	$ : 0.02	f : 0.02	
c : 0.16	[ : 0.10	e : 0.10	g : 0.10	b : 0.08	! : 0.08	i : 0.08	d : 0.06	# : 0.06	$ : 0.04	" : 0.04	= : 0.04	a : 0.02	f : 0.02	
c : 0.16	[ : 0.14	e : 0.10	g : 0.10	! : 0.08	f : 0.06	a : 0.06	i : 0.06	# : 0.06	b : 0.04	$ : 0.04	= : 0.04	d : 0.02	" : 0.02	
f : 0.22	c : 0.16	[ : 0.14	! : 0.12	e : 0.08	g : 0.08	i : 0.06	# : 0.06	d : 0.02	$ : 0.02	= : 0.02	
e : 0.28	f : 0.20	c : 0.14	! : 0.10	g : 0.06	[ : 0.04	b : 0.04	d : 0.02	" : 0.02	i : 0.02	$ : 0.02	= : 0.02	x : 0.02	
e : 0.28	f : 0.20	c : 0.14	b : 0.06	g : 0.06	[ : 0.04	! : 0.04	d : 0.04	" : 0.04	i : 0.02	$ : 0.02	= : 0.02	x : 0.02	
e : 0.24	f : 0.20	c : 0.20	[ : 0.14	g : 0.06	d : 0.04	" : 0.04	b : 0.02	= : 0.02	x : 0.02	
e : 0.24	f : 0.20	b : 0.18	c : 0.16	g : 0.06	r : 0.04	d : 0.02	" : 0.02	s : 0.02	[ : 0.02	x : 0.02	
e : 0.20	r : 0.20	b : 0.18	f : 0.16	c : 0.10	g : 0.04	a : 0.04	d : 0.02	s : 0.02	x : 0.02	
q : 0.51	r : 0.32	s : 0.08	x : 0.04	p : 0.04	
q : 0.51	r : 0.32	s : 0.08	x : 0.04	p : 0.04	
q : 0.51	r : 0.32	s : 0.08	x : 0.04	p : 0.04	
q : 0.51	r : 0.32	s : 0.08	x : 0.04	p : 0.04	
q : 0.51	r : 0.32	s : 0.08	x : 0.04	p : 0.04	
q : 0.51	r : 0.32	s : 0.08	x : 0.04	p : 0.04	
q : 0.51	r : 0.32	s : 0.08	x : 0.04	p : 0.04	
q : 0.51	r : 0.28	s : 0.08	c : 0.06	x : 0.04	b : 0.02	
c : 0.18	e : 0.16	b : 0.16	f : 0.12	r : 0.12	g : 0.06	s : 0.06	x : 0.04	a : 0.04	d : 0.02	= : 0.02	
e : 0.18	f : 0.18	c : 0.18	b : 0.18	g : 0.06	s : 0.06	] : 0.04	x : 0.04	d : 0.02	3 : 0.02	= : 0.02	
e : 0.22	f : 0.20	c : 0.18	] : 0.10	b : 0.06	g : 0.06	3 : 0.04	4 : 0.04	x : 0.02	d : 0.02	i : 0.02	= : 0.02	
e : 0.26	f : 0.20	c : 0.12	] : 0.08	b : 0.06	g : 0.06	3 : 0.06	4 : 0.04	x : 0.02	2 : 0.02	d : 0.02	i : 0.02	= : 0.02	
e : 0.26	f : 0.22	c : 0.18	3 : 0.06	g : 0.06	b : 0.04	4 : 0.04	i : 0.04	x : 0.02	2 : 0.02	] : 0.02	= : 0.02	
f : 0.22	] : 0.14	c : 0.12	e : 0.12	g : 0.10	2 : 0.06	4 : 0.06	3 : 0.04	d : 0.04	i : 0.04	x : 0.02	= : 0.02	
e : 0.16	] : 0.12	c : 0.10	g : 0.10	f : 0.10	2 : 0.06	= : 0.06	d : 0.06	i : 0.06	3 : 0.04	b : 0.04	a : 0.04	x : 0.02	4 : 0.02	
e : 0.14	2 : 0.12	b : 0.10	g : 0.10	d : 0.10	c : 0.08	= : 0.06	3 : 0.06	i : 0.06	] : 0.04	4 : 0.04	f : 0.04	h : 0.02	> : 0.02	
2 : 0.14	e : 0.10	g : 0.10	d : 0.10	c : 0.10	b : 0.06	= : 0.06	3 : 0.06	] : 0.06	i : 0.06	h : 0.04	4 : 0.04	a : 0.02	> : 0.02	f : 0.02	
g : 0.16	e : 0.14	d : 0.10	c : 0.10	] : 0.08	i : 0.08	= : 0.06	2 : 0.06	3 : 0.06	h : 0.04	b : 0.04	> : 0.02	f : 0.02	4 : 0.02	
g : 0.20	e : 0.14	d : 0.12	c : 0.10	i : 0.08	] : 0.06	2 : 0.06	b : 0.06	h : 0.04	= : 0.04	3 : 0.02	f : 0.02	> : 0.02	4 : 0.02	
g : 0.22	c : 0.14	e : 0.12	h : 0.08	d : 0.08	] : 0.06	i : 0.06	4 : 0.04	= : 0.04	2 : 0.04	3 : 0.02	f : 0.02	> : 0.02	: : 0.02	b : 0.02	
g : 0.22	c : 0.14	e : 0.10	d : 0.10	h : 0.08	] : 0.06	i : 0.06	4 : 0.04	= : 0.04	: : 0.04	f : 0.04	> : 0.02	2 : 0.02	[ : 0.02	
g : 0.24	c : 0.14	e : 0.10	h : 0.10	d : 0.08	: : 0.06	f : 0.06	4 : 0.04	= : 0.04	i : 0.04	a : 0.02	3 : 0.02	] : 0.02	> : 0.02	

#score	674.514888009445
#seq	49
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_UTR_m3_run2.txt

#BEAR
beeeeeooooooeeeee	chr4:56889946-56890155(-)$1	209	58	75	13.1106
:eeeeeooooooeeeee	chr7:29678351-29678565(-)$1	214	193	210	12.5791
ggggggooooooggggg	chr10:67008235-67008446(-)$1	211	64	81	9.6965
ggggggooooooggggg	chr5:110535996-110536214(-)$1	218	135	152	9.6965
$$ddddoooooodddd4	chr10:127995258-127995471(-)$1	213	65	82	9.4561
[eeeeeooooooeeeee	chr4:11097863-11098087(+)$1	224	185	202	13.5743
+eeeeeooooooeeeee	chr8:74493183-74493403(+)$1	220	141	158	12.9154
!eeeeeooooooeeeee	chr10:70844248-70844461(+)$1	213	61	78	13.6040
beeeeennnnneeeee]	chr3:142446195-142446413(+)$1	218	4	21	10.4841
[eeeeennnnneeeee]	chr3:95466163-95466376(+)$1	213	145	162	10.9477
ggggggooooooggggg	chr4:109349497-109349715(+)$1	218	51	68	9.6965
eeeeeeooooooeeeee	chr1:154684728-154684944(-)$1	216	171	188	13.1965
"eeeeeooooooeeeee	chr1:34872826-34873038(-)$1	212	37	54	13.5814
:eeeeeooooooeeeee	chr11:33052458-33052676(-)$1	218	0	17	12.5791
[eeeeennnnneeeee4	chr4:33397281-33397496(+)$1	215	87	104	10.7936
geeeeennnnneeeee:	chr1:72206990-72207209(-)$1	219	27	44	9.5478
beeeeennnnneeeee]	chr4:82872343-82872559(-)$1	216	46	63	10.4841
"eeeeeooooooeeeee	chr11:69470189-69470409(-)$1	220	122	139	13.5814
"eeeeeooooooeeeee	chr7:97357116-97357335(+)$1	219	187	204	13.5814
eeee[aooooooa22ee	chr14:13047604-13047824(+)$1	220	102	119	10.2718
[eeeeennnnneeeeec	chr8:8619661-8619881(-)$1	220	192	209	10.6447
!eeeeennnnneeeeed	chr2:37228092-37228308(-)$1	216	181	198	10.6843
eeeeeeooooooeeeee	chr17:56179826-56180043(+)$1	217	146	163	13.1965
""ddddoooooodddd3	chr5:100463985-100464201(-)$1	216	58	75	9.9504
ggggggooooooggggg	chr4:132753811-132754024(+)$1	213	33	50	9.6965
eeeeeeooooooeeeee	chr1:88246397-88246612(-)$1	215	32	49	13.1965
:eeeeeooooooeeeee	chr1:33777178-33777398(+)$1	220	0	17	12.5791
deeeeennnnneeeee]	chr11:108782046-108782266(+)$1	220	104	121	10.4903
eeddddoooooodddd]	chr8:123181812-123182028(-)$1	216	79	96	10.2178
!eeeeennnnneeeee2	chr15:7145790-7146006(+)$1	216	26	43	10.7027
"eeeeeooooooeeeee	chr12:107049140-107049359(+)$1	219	92	109	13.5814
#eeeeennnnneeeee]	chr11:101332760-101332973(+)$1	213	59	76	10.9360
:eeeeeooooooeeeee	chr15:77621108-77621321(-)$1	213	116	133	12.5791
ggggggooooooggggg	chr3:84782338-84782555(+)$1	217	27	44	9.6965
[eeeeeooooooeeeee	chr1:43806355-43806571(-)$1	216	93	110	13.5743
:eeeeeooooooeeeee	chr13:75908518-75908727(+)$1	209	104	121	12.5791
eee[bboooooobbeee	chr8:131237104-131237325(+)$1	221	149	166	9.6244
ddddddoooooodddd]	chr2:155102163-155102383(-)$1	220	87	104	9.6820
)eeeeennnnneeeeed	chr8:74147881-74148100(+)$1	219	65	82	10.1381
#eeeeeooooooeeeee	chr7:106494511-106494722(-)$1	211	75	92	13.5625
f[ddddoooooodddd]	chr15:82957513-82957732(-)$1	219	30	47	9.7592
ggggggooooooggggg	chr7:134004936-134005153(-)$1	217	134	151	9.6965
ggggggooooooggggg	chr7:149573585-149573795(-)$1	210	36	53	9.6965
feeeeennnnneeeee4	chr13:94074810-94075032(+)$1	222	195	212	10.3724
!!ddddoooooodddd2	chr1:193645489-193645707(+)$1	218	159	176	9.9537
deeeeeooooooeeeee	chr1:120579290-120579505(+)$1	215	153	170	13.1169
[eeeeennnnneeeee]	chr13:102452203-102452416(-)$1	213	110	127	10.9477
ieeeeeooooooeeeee	chr4:53046616-53046829(-)$1	213	68	85	13.3226
[eeeeeooooooeeeee	chr8:125408072-125408283(-)$1	211	144	161	13.5743
[eeeeeooooooeeeee	chr19:10621727-10621939(-)$1	212	179	196	13.5743
ceeeeeooooooeeeee	chr11:74663326-74663546(-)$1	220	67	84	13.2438

#otherMatches

#Seq PSSM
gcuucaucucacugaag	chr4:56889946-56890155(-)$1	209	58	75	13.1106
CACUCGCCCCCUUGAGU	chr7:29678351-29678565(-)$1	214	193	210	12.5791
UAGCCUGGAAUUGGGCU	chr10:67008235-67008446(-)$1	211	64	81	9.6965
GGUGAGCGGUACCUCAC	chr5:110535996-110536214(-)$1	218	135	152	9.6965
CUAGAAGCUGAAUUCUC	chr10:127995258-127995471(-)$1	213	65	82	9.4561
GUUUGCGCCUAAGUGAA	chr4:11097863-11098087(+)$1	224	185	202	13.5743
UUUUCAAACCCAUGAAA	chr8:74493183-74493403(+)$1	220	141	158	12.9154
AGACUUCCCUGAAAGUC	chr10:70844248-70844461(+)$1	213	61	78	13.6040
ACAGUCCUACAGACUGA	chr3:142446195-142446413(+)$1	218	4	21	10.4841
AGAAACACUGGGUUUUG	chr3:95466163-95466376(+)$1	213	145	162	10.9477
CGGCCGCAGCUUCGGCC	chr4:109349497-109349715(+)$1	218	51	68	9.6965
UGCUUGAAGCCCCAGGC	chr1:154684728-154684944(-)$1	216	171	188	13.1965
CACUGAAGGCACUCAGU	chr1:34872826-34873038(-)$1	212	37	54	13.5814
UGUGUUGUCUAAAAUGC	chr11:33052458-33052676(-)$1	218	0	17	12.5791
GGGUAGAGCUGCUGCCG	chr4:33397281-33397496(+)$1	215	87	104	10.7936
GUGGCCUCAUUGGCUAU	chr1:72206990-72207209(-)$1	219	27	44	9.5478
GUAUCUCAGCAAGAUGU	chr4:82872343-82872559(-)$1	216	46	63	10.4841
GGGUGUGUGAAGGCGCU	chr11:69470189-69470409(-)$1	220	122	139	13.5814
CAUUGUAGGAAAGCAAU	chr7:97357116-97357335(+)$1	219	187	204	13.5814
GUGUGGGCAGGACAGGC	chr14:13047604-13047824(+)$1	220	102	119	10.2718
UCCGGUGAAGUGCUGGG	chr8:8619661-8619881(-)$1	220	192	209	10.6447
UGCCAACCUUAUUGGUG	chr2:37228092-37228308(-)$1	216	181	198	10.6843
GGGUGGGUGAAACUGCC	chr17:56179826-56180043(+)$1	217	146	163	13.1965
UUCAGUGCCCAAACUGU	chr5:100463985-100464201(-)$1	216	58	75	9.9504
CUCUCCGAGAAAGGGGA	chr4:132753811-132754024(+)$1	213	33	50	9.6965
gucuugaaaaaacaaga	chr1:88246397-88246612(-)$1	215	32	49	13.1965
CUUCCCAGGAGCGGGAA	chr1:33777178-33777398(+)$1	220	0	17	12.5791
CCCGGAGGACAUUUGGU	chr11:108782046-108782266(+)$1	220	104	121	10.4903
ACAUUUAUAGAGGAAUA	chr8:123181812-123182028(-)$1	216	79	96	10.2178
AAGUUAAAUUCUAACUG	chr15:7145790-7146006(+)$1	216	26	43	10.7027
AUCUUUUUGAACAGGGA	chr12:107049140-107049359(+)$1	219	92	109	13.5814
CUAGCUGAGAGAGCUGA	chr11:101332760-101332973(+)$1	213	59	76	10.9360
AGGACAAGGACAUGUUC	chr15:77621108-77621321(-)$1	213	116	133	12.5791
CAAAUUUGCUCUAGUUU	chr3:84782338-84782555(+)$1	217	27	44	9.6965
CUGUGUUGUGCUGCAUA	chr1:43806355-43806571(-)$1	216	93	110	13.5743
GUGUUUAAAACAAGACA	chr13:75908518-75908727(+)$1	209	104	121	12.5791
AGGAUUACUUCAGACUU	chr8:131237104-131237325(+)$1	221	149	166	9.6244
cUCAGAGAUGCGUCUGC	chr2:155102163-155102383(-)$1	220	87	104	9.6820
AUCAGUGAUGAACUGAU	chr8:74147881-74148100(+)$1	219	65	82	10.1381
AUGCGAGAUGAGUUGUA	chr7:106494511-106494722(-)$1	211	75	92	13.5625
GGGGCUGCGUCAGGCUA	chr15:82957513-82957732(-)$1	219	30	47	9.7592
GAAAUUGCUGAAGGUUU	chr7:134004936-134005153(-)$1	217	134	151	9.6965
AGCCGGCGACCUCUGGC	chr7:149573585-149573795(-)$1	210	36	53	9.6965
AAUAGUUAAGUGCUAUA	chr13:94074810-94075032(+)$1	222	195	212	10.3724
GGGCUUAGGGAGAAGCA	chr1:193645489-193645707(+)$1	218	159	176	9.9537
CCAGCUCUCCUUAGCUG	chr1:120579290-120579505(+)$1	215	153	170	13.1169
GUGACAAGUUCUGUUAA	chr13:102452203-102452416(-)$1	213	110	127	10.9477
UGCACUGUGUCAAGUGU	chr4:53046616-53046829(-)$1	213	68	85	13.3226
GGCACAAGUCCCUGUGU	chr8:125408072-125408283(-)$1	211	144	161	13.5743
GUCUCUGUCCAAGGGGA	chr19:10621727-10621939(-)$1	212	179	196	13.5743
GUAGGAAGACAGUCCUA	chr11:74663326-74663546(-)$1	220	67	84	13.2438

#DB
((((((......)))))	chr4:56889946-56890155(-)$1	1	58	75	13.1106
.(((((......)))))	chr7:29678351-29678565(-)$1	1	193	210	12.5791
((((((......)))))	chr10:67008235-67008446(-)$1	1	64	81	9.6965
((((((......)))))	chr5:110535996-110536214(-)$1	1	135	152	9.6965
..((((......)))).	chr10:127995258-127995471(-)$1	1	65	82	9.4561
.(((((......)))))	chr4:11097863-11098087(+)$1	1	185	202	13.5743
.(((((......)))))	chr8:74493183-74493403(+)$1	1	141	158	12.9154
.(((((......)))))	chr10:70844248-70844461(+)$1	1	61	78	13.6040
((((((.....))))).	chr3:142446195-142446413(+)$1	1	4	21	10.4841
.(((((.....))))).	chr3:95466163-95466376(+)$1	1	145	162	10.9477
((((((......)))))	chr4:109349497-109349715(+)$1	1	51	68	9.6965
((((((......)))))	chr1:154684728-154684944(-)$1	1	171	188	13.1965
.(((((......)))))	chr1:34872826-34873038(-)$1	1	37	54	13.5814
.(((((......)))))	chr11:33052458-33052676(-)$1	1	0	17	12.5791
.(((((.....))))).	chr4:33397281-33397496(+)$1	1	87	104	10.7936
)(((((.....))))).	chr1:72206990-72207209(-)$1	1	27	44	9.5478
((((((.....))))).	chr4:82872343-82872559(-)$1	1	46	63	10.4841
.(((((......)))))	chr11:69470189-69470409(-)$1	1	122	139	13.5814
.(((((......)))))	chr7:97357116-97357335(+)$1	1	187	204	13.5814
((((.(......)..))	chr14:13047604-13047824(+)$1	1	102	119	10.2718
.(((((.....))))))	chr8:8619661-8619881(-)$1	1	192	209	10.6447
.(((((.....))))))	chr2:37228092-37228308(-)$1	1	181	198	10.6843
)(((((......)))))	chr17:56179826-56180043(+)$1	1	146	163	13.1965
..((((......)))).	chr5:100463985-100464201(-)$1	1	58	75	9.9504
((((((......)))))	chr4:132753811-132754024(+)$1	1	33	50	9.6965
)(((((......)))))	chr1:88246397-88246612(-)$1	1	32	49	13.1965
.(((((......)))))	chr1:33777178-33777398(+)$1	1	0	17	12.5791
((((((.....))))).	chr11:108782046-108782266(+)$1	1	104	121	10.4903
((((((......)))).	chr8:123181812-123182028(-)$1	1	79	96	10.2178
.(((((.....))))).	chr15:7145790-7146006(+)$1	1	26	43	10.7027
.(((((......)))))	chr12:107049140-107049359(+)$1	1	92	109	13.5814
.(((((.....))))).	chr11:101332760-101332973(+)$1	1	59	76	10.9360
.(((((......)))))	chr15:77621108-77621321(-)$1	1	116	133	12.5791
((((((......)))))	chr3:84782338-84782555(+)$1	1	27	44	9.6965
.(((((......)))))	chr1:43806355-43806571(-)$1	1	93	110	13.5743
.(((((......)))))	chr13:75908518-75908727(+)$1	1	104	121	12.5791
(((.((......)))))	chr8:131237104-131237325(+)$1	1	149	166	9.6244
((((((......)))).	chr2:155102163-155102383(-)$1	1	87	104	9.6820
.(((((.....))))))	chr8:74147881-74148100(+)$1	1	65	82	10.1381
.(((((......)))))	chr7:106494511-106494722(-)$1	1	75	92	13.5625
(.((((......)))).	chr15:82957513-82957732(-)$1	1	30	47	9.7592
((((((......)))))	chr7:134004936-134005153(-)$1	1	134	151	9.6965
((((((......)))))	chr7:149573585-149573795(-)$1	1	36	53	9.6965
((((((.....))))).	chr13:94074810-94075032(+)$1	1	195	212	10.3724
..((((......)))).	chr1:193645489-193645707(+)$1	1	159	176	9.9537
((((((......)))))	chr1:120579290-120579505(+)$1	1	153	170	13.1169
.(((((.....))))).	chr13:102452203-102452416(-)$1	1	110	127	10.9477
)(((((......)))))	chr4:53046616-53046829(-)$1	1	68	85	13.3226
.(((((......)))))	chr8:125408072-125408283(-)$1	1	144	161	13.5743
.(((((......)))))	chr19:10621727-10621939(-)$1	1	179	196	13.5743
((((((......)))))	chr11:74663326-74663546(-)$1	1	67	84	13.2438

#PSSM
g : 0.15	[ : 0.15	e : 0.11	: : 0.09	" : 0.09	! : 0.07	b : 0.05	d : 0.05	# : 0.03	f : 0.03	$ : 0.01	+ : 0.01	) : 0.01	i : 0.01	c : 0.01	
e : 0.76	g : 0.13	$ : 0.01	" : 0.01	d : 0.01	[ : 0.01	! : 0.01	
e : 0.74	g : 0.13	d : 0.11	
e : 0.72	g : 0.13	d : 0.11	[ : 0.01	
e : 0.70	g : 0.13	d : 0.11	[ : 0.01	b : 0.01	
e : 0.70	g : 0.13	d : 0.11	a : 0.01	b : 0.01	
o : 0.74	n : 0.25	
o : 0.74	n : 0.25	
o : 0.74	n : 0.25	
o : 0.74	n : 0.25	
o : 0.74	n : 0.25	
o : 0.74	e : 0.25	
e : 0.70	g : 0.13	d : 0.11	a : 0.01	b : 0.01	
e : 0.70	g : 0.13	d : 0.11	2 : 0.01	b : 0.01	
e : 0.72	g : 0.13	d : 0.11	2 : 0.01	
e : 0.74	g : 0.13	d : 0.11	
e : 0.49	] : 0.17	g : 0.13	4 : 0.05	d : 0.03	2 : 0.03	: : 0.01	c : 0.01	3 : 0.01	

#score	587.9499978387963
#seq	51
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000