
#NAME
PARCLIP_Rbm3_Liu2013_mm9_CDS_m2_run2.nuc.txt

#NT
GCAG	chr16:91678401-91678643(+)$1	242	66	70	12.0000
GCAG	chr1:158571583-158571822(+)$1	239	13	17	12.0000
GCAG	chr4:130224776-130225011(+)$1	235	104	108	12.0000
GCAG	chr2:127057355-127057586(+)$1	231	121	125	12.0000
GCAG	chr8:108187627-108187857(+)$1	230	201	205	12.0000
GCAG	chr6:47974532-47974757(-)$1	225	162	166	12.0000
GCAG	chr4:133236296-133236523(-)$1	227	46	50	12.0000
GCAG	chr17:84174910-84175136(+)$1	226	54	58	12.0000
GCAG	chr19:29038882-29039118(+)$1	236	161	165	12.0000
GCAG	chr7:134169355-134169605(-)$1	250	20	24	12.0000
GCAG	chrX:149934741-149934966(+)$1	225	45	49	12.0000
GCAG	chrX:91517739-91517976(+)$1	237	41	45	12.0000
GCAG	chr1:156983756-156983982(-)$1	226	50	54	12.0000
GCAG	chr7:28832145-28832367(-)$1	222	118	122	12.0000
GCAG	chr9:108994427-108994655(+)$1	228	32	36	12.0000
GCAG	chr7:134342519-134342742(-)$1	223	61	65	12.0000
GCAG	chr11:83822802-83823035(+)$1	233	100	104	12.0000
GCAG	chr5:88984754-88984976(+)$1	222	217	221	12.0000
GCAG	chr7:134740672-134740898(+)$1	226	26	30	12.0000
GCAG	chr11:96680870-96681105(-)$1	235	102	106	12.0000
GCAG	chr3:58220196-58220436(+)$1	240	4	8	12.0000
GCAG	chr1:55295074-55295297(+)$1	223	115	119	12.0000
GCAG	chr4:131888709-131888934(-)$1	225	13	17	12.0000
GCAG	chr12:110031882-110032110(+)$1	228	3	7	12.0000
GCAG	chr19:7509483-7509717(-)$1	234	18	22	12.0000
GCAG	chr16:98171012-98171240(-)$1	228	179	183	12.0000
GCAG	chr5:31476710-31476941(-)$1	231	69	73	12.0000
GCAG	chr1:157549566-157549800(-)$1	234	7	11	12.0000
GCAG	chr7:17396456-17396682(-)$1	226	91	95	12.0000
GCAG	chr11:84801972-84802198(-)$1	226	4	8	12.0000
GCAG	chr13:55314662-55314887(+)$1	225	62	66	12.0000
GCAG	chr11:79845353-79845581(+)$1	228	170	174	12.0000
GCAG	chr9:75245460-75245704(-)$1	244	123	127	12.0000
GCAG	chr1:183141327-183141554(-)$1	227	69	73	12.0000
GCAG	chrX:91497808-91498030(+)$1	222	135	139	12.0000
GCAG	chr1:75312103-75312325(-)$1	222	24	28	12.0000
GCAG	chr17:66797556-66797783(-)$1	227	131	135	12.0000
GCAG	chr7:26022551-26022774(-)$1	223	29	33	12.0000
GCAG	chr7:134754676-134754903(-)$1	227	156	160	12.0000
GCAG	chr17:23956675-23956924(+)$1	249	106	110	12.0000
GCAG	chr5:143667192-143667434(-)$1	242	5	9	12.0000
GCAG	chr9:55389940-55390187(+)$1	247	80	84	12.0000
gcag	chr10:126496524-126496752(-)$1	228	25	29	12.0000
GCAG	chr19:46130980-46131208(+)$1	228	6	10	12.0000
GCAG	chr19:24551083-24551316(-)$1	233	203	207	12.0000
GCAG	chr2:105524963-105525186(+)$1	223	76	80	12.0000
GCAG	chr1:179378399-179378622(+)$1	223	18	22	12.0000
GCAG	chr11:20124614-20124838(+)$1	224	42	46	12.0000
GCAG	chr11:57872120-57872343(+)$1	223	4	8	12.0000
GCAG	chr13:56824902-56825132(+)$1	230	142	146	12.0000
GCAG	chr11:21048088-21048309(+)$1	221	9	13	12.0000
GCAG	chr11:86168748-86168989(-)$1	241	76	80	12.0000
GCAG	chr2:34678139-34678390(-)$1	251	77	81	12.0000
GCAG	chr3:95568496-95568721(-)$1	225	39	43	12.0000
GCAG	chr2:152137407-152137636(+)$1	229	42	46	12.0000
GCAG	chr11:77523095-77523336(+)$1	241	172	176	12.0000
GCAG	chr12:32172381-32172610(-)$1	229	74	78	12.0000
GCAG	chr15:88693212-88693452(+)$1	240	109	113	12.0000
GCAG	chr8:108188135-108188363(+)$1	228	63	67	12.0000
GCAG	chr4:41260202-41260427(-)$1	225	61	65	12.0000
GCAG	chr10:42254433-42254663(+)$1	230	213	217	12.0000
GCAG	chr5:136410152-136410381(-)$1	229	125	129	12.0000
GCAG	chr11:86132964-86133190(-)$1	226	38	42	12.0000
gcag	chr11:96133160-96133392(+)$1	232	24	28	12.0000
GCAG	chr11:62352310-62352534(-)$1	224	96	100	12.0000
GCAG	chr1:192995259-192995487(-)$1	228	117	121	12.0000
GCAG	chr14:120902883-120903143(+)$1	260	96	100	12.0000
GCAG	chrX:109746301-109746523(+)$1	222	204	208	12.0000
GCAG	chr11:60352133-60352365(+)$1	232	21	25	12.0000
GCAG	chr9:31720499-31720726(-)$1	227	98	102	12.0000
GCAG	chr9:58671273-58671502(+)$1	229	92	96	12.0000
GCAG	chr10:57956472-57956696(+)$1	224	103	107	12.0000
GCAG	chr3:108240362-108240593(-)$1	231	24	28	12.0000
GCAG	chr18:67561793-67562020(+)$1	227	41	45	12.0000
GCAG	chr7:52382517-52382748(-)$1	231	186	190	12.0000
GCAG	chr10:80493893-80494115(-)$1	222	38	42	12.0000
GCAG	chr16:17258024-17258251(+)$1	227	62	66	12.0000
GCAG	chr6:38448618-38448838(+)$1	220	75	79	12.0000
GCAG	chr11:21048372-21048612(+)$1	240	73	77	12.0000
GCAG	chr1:135033166-135033442(+)$1	276	161	165	12.0000
GCAG	chrX:71473169-71473396(-)$1	227	8	12	12.0000

#otherMatches

#Struct PSSM
DDDD	chr4:141025242-141025464(-)$1	222	112	116	12.0000
hooo	chr16:91678401-91678643(+)$1	242	66	70	12.0000
oooo	chr1:158571583-158571822(+)$1	239	13	17	12.0000
EEEE	chr4:130224776-130225011(+)$1	235	104	108	12.0000
dd:E	chr2:127057355-127057586(+)$1	231	121	125	12.0000
BB~~	chr8:108187627-108187857(+)$1	230	201	205	12.0000
}CCC	chr6:47974532-47974757(-)$1	225	162	166	12.0000
eeee	chr4:133236296-133236523(-)$1	227	46	50	12.0000
a[dd	chr17:84174910-84175136(+)$1	226	54	58	12.0000
bbmm	chr19:29038882-29039118(+)$1	236	161	165	12.0000
iaqq	chr7:134169355-134169605(-)$1	250	20	24	12.0000
GGGG	chrX:149934741-149934966(+)$1	225	45	49	12.0000
fffn	chrX:91517739-91517976(+)$1	237	41	45	12.0000
gggg	chr1:156983756-156983982(-)$1	226	50	54	12.0000
bb44	chr7:28832145-28832367(-)$1	222	118	122	12.0000
cc[d	chr9:108994427-108994655(+)$1	228	32	36	12.0000
BB:c	chr7:134342519-134342742(-)$1	223	61	65	12.0000
mmmm	chr11:83822802-83823035(+)$1	233	100	104	12.0000
dd::	chr5:88984754-88984976(+)$1	222	217	221	12.0000
qggg	chr7:134740672-134740898(+)$1	226	26	30	12.0000
EEEE	chr11:96680870-96681105(-)$1	235	102	106	12.0000
FFLL	chr3:58220196-58220436(+)$1	240	4	8	12.0000
DDD:	chr1:55295074-55295297(+)$1	223	115	119	12.0000
eeee	chr4:131888709-131888934(-)$1	225	13	17	12.0000
EE::	chr12:110031882-110032110(+)$1	228	3	7	12.0000
{BBe	chr19:7509483-7509717(-)$1	234	18	22	12.0000
eeee	chr16:98171012-98171240(-)$1	228	179	183	12.0000
[ccc	chr5:31476710-31476941(-)$1	231	69	73	12.0000
CC{H	chr1:157549566-157549800(-)$1	234	7	11	12.0000
cbbb	chr7:17396456-17396682(-)$1	226	91	95	12.0000
:EEE	chr11:84801972-84802198(-)$1	226	4	8	12.0000
eeee	chr13:55314662-55314887(+)$1	225	62	66	12.0000
eeeb	chr11:79845353-79845581(+)$1	228	170	174	12.0000
#ccc	chr9:75245460-75245704(-)$1	244	123	127	12.0000
d::c	chr1:183141327-183141554(-)$1	227	69	73	12.0000
FFFF	chrX:91497808-91498030(+)$1	222	135	139	12.0000
"""a	chr1:75312103-75312325(-)$1	222	24	28	12.0000
ccc#	chr17:66797556-66797783(-)$1	227	131	135	12.0000
cc!!	chr7:26022551-26022774(-)$1	223	29	33	12.0000
DDDD	chr7:134754676-134754903(-)$1	227	156	160	12.0000
a!!b	chr17:23956675-23956924(+)$1	249	106	110	12.0000
{DDD	chr5:143667192-143667434(-)$1	242	5	9	12.0000
dddd	chr9:55389940-55390187(+)$1	247	80	84	12.0000
qqqa	chr10:126496524-126496752(-)$1	228	25	29	12.0000
gg""	chr19:46130980-46131208(+)$1	228	6	10	12.0000
:::E	chr19:24551083-24551316(-)$1	233	203	207	12.0000
ffff	chr2:105524963-105525186(+)$1	223	76	80	12.0000
pppc	chr1:179378399-179378622(+)$1	223	18	22	12.0000
FF::	chr11:20124614-20124838(+)$1	224	42	46	12.0000
gggq	chr11:57872120-57872343(+)$1	223	4	8	12.0000
]bb:	chr13:56824902-56825132(+)$1	230	142	146	12.0000
ssss	chr11:21048088-21048309(+)$1	221	9	13	12.0000
HHHH	chr11:86168748-86168989(-)$1	241	76	80	12.0000
dddd	chr2:34678139-34678390(-)$1	251	77	81	12.0000
qqqa	chr3:95568496-95568721(-)$1	225	39	43	12.0000
C:FF	chr2:152137407-152137636(+)$1	229	42	46	12.0000
::ee	chr11:77523095-77523336(+)$1	241	172	176	12.0000
D{DD	chr12:32172381-32172610(-)$1	229	74	78	12.0000
!!cc	chr15:88693212-88693452(+)$1	240	109	113	12.0000
4bb]	chr8:108188135-108188363(+)$1	228	63	67	12.0000
FFFF	chr4:41260202-41260427(-)$1	225	61	65	12.0000
bbqq	chr10:42254433-42254663(+)$1	230	213	217	12.0000
BB::	chr5:136410152-136410381(-)$1	229	125	129	12.0000
mmmd	chr11:86132964-86133190(-)$1	226	38	42	12.0000
bb!!	chr11:96133160-96133392(+)$1	232	24	28	12.0000
bb]d	chr11:62352310-62352534(-)$1	224	96	100	12.0000
EEEE	chr1:192995259-192995487(-)$1	228	117	121	12.0000
eeee	chr14:120902883-120903143(+)$1	260	96	100	12.0000
FFF:	chrX:109746301-109746523(+)$1	222	204	208	12.0000
EELL	chr11:60352133-60352365(+)$1	232	21	25	12.0000
G{BB	chr9:31720499-31720726(-)$1	227	98	102	12.0000
eeee	chr9:58671273-58671502(+)$1	229	92	96	12.0000
33ee	chr10:57956472-57956696(+)$1	224	103	107	12.0000
&&&&	chr3:108240362-108240593(-)$1	231	24	28	12.0000
::::	chr18:67561793-67562020(+)$1	227	41	45	12.0000
EDDD	chr7:52382517-52382748(-)$1	231	186	190	12.0000
EEEM	chr10:80493893-80494115(-)$1	222	38	42	12.0000
dooo	chr16:17258024-17258251(+)$1	227	62	66	12.0000
E::d	chr6:38448618-38448838(+)$1	220	75	79	12.0000
cccl	chr11:21048372-21048612(+)$1	240	73	77	12.0000
qqqq	chr1:135033166-135033442(+)$1	276	161	165	12.0000
fffm	chrX:71473169-71473396(-)$1	227	8	12	12.0000

#DB
))))	chr4:141025242-141025464(-)$1	1	112	116	12.0000
(...	chr16:91678401-91678643(+)$1	1	66	70	12.0000
....	chr1:158571583-158571822(+)$1	1	13	17	12.0000
((((	chr4:130224776-130225011(+)$1	1	104	108	12.0000
)).)	chr2:127057355-127057586(+)$1	1	121	125	12.0000
))..	chr8:108187627-108187857(+)$1	1	201	205	12.0000
.)))	chr6:47974532-47974757(-)$1	1	162	166	12.0000
((((	chr4:133236296-133236523(-)$1	1	46	50	12.0000
(.((	chr17:84174910-84175136(+)$1	1	54	58	12.0000
((..	chr19:29038882-29039118(+)$1	1	161	165	12.0000
((..	chr7:134169355-134169605(-)$1	1	20	24	12.0000
((((	chrX:149934741-149934966(+)$1	1	45	49	12.0000
(((.	chrX:91517739-91517976(+)$1	1	41	45	12.0000
))))	chr1:156983756-156983982(-)$1	1	50	54	12.0000
))..	chr7:28832145-28832367(-)$1	1	118	122	12.0000
((.(	chr9:108994427-108994655(+)$1	1	32	36	12.0000
((.(	chr7:134342519-134342742(-)$1	1	61	65	12.0000
....	chr11:83822802-83823035(+)$1	1	100	104	12.0000
))..	chr5:88984754-88984976(+)$1	1	217	221	12.0000
.)))	chr7:134740672-134740898(+)$1	1	26	30	12.0000
((((	chr11:96680870-96681105(-)$1	1	102	106	12.0000
((..	chr3:58220196-58220436(+)$1	1	4	8	12.0000
(((.	chr1:55295074-55295297(+)$1	1	115	119	12.0000
((((	chr4:131888709-131888934(-)$1	1	13	17	12.0000
((..	chr12:110031882-110032110(+)$1	1	3	7	12.0000
.(((	chr19:7509483-7509717(-)$1	1	18	22	12.0000
))))	chr16:98171012-98171240(-)$1	1	179	183	12.0000
.(((	chr5:31476710-31476941(-)$1	1	69	73	12.0000
((.(	chr1:157549566-157549800(-)$1	1	7	11	12.0000
((((	chr7:17396456-17396682(-)$1	1	91	95	12.0000
.(((	chr11:84801972-84802198(-)$1	1	4	8	12.0000
((((	chr13:55314662-55314887(+)$1	1	62	66	12.0000
))))	chr11:79845353-79845581(+)$1	1	170	174	12.0000
.(((	chr9:75245460-75245704(-)$1	1	123	127	12.0000
)..(	chr1:183141327-183141554(-)$1	1	69	73	12.0000
))))	chrX:91497808-91498030(+)$1	1	135	139	12.0000
...(	chr1:75312103-75312325(-)$1	1	24	28	12.0000
(((.	chr17:66797556-66797783(-)$1	1	131	135	12.0000
((..	chr7:26022551-26022774(-)$1	1	29	33	12.0000
))))	chr7:134754676-134754903(-)$1	1	156	160	12.0000
(..(	chr17:23956675-23956924(+)$1	1	106	110	12.0000
.(((	chr5:143667192-143667434(-)$1	1	5	9	12.0000
))))	chr9:55389940-55390187(+)$1	1	80	84	12.0000
...)	chr10:126496524-126496752(-)$1	1	25	29	12.0000
((..	chr19:46130980-46131208(+)$1	1	6	10	12.0000
...)	chr19:24551083-24551316(-)$1	1	203	207	12.0000
((((	chr2:105524963-105525186(+)$1	1	76	80	12.0000
...)	chr1:179378399-179378622(+)$1	1	18	22	12.0000
((..	chr11:20124614-20124838(+)$1	1	42	46	12.0000
(((.	chr11:57872120-57872343(+)$1	1	4	8	12.0000
.)).	chr13:56824902-56825132(+)$1	1	142	146	12.0000
....	chr11:21048088-21048309(+)$1	1	9	13	12.0000
((((	chr11:86168748-86168989(-)$1	1	76	80	12.0000
((((	chr2:34678139-34678390(-)$1	1	77	81	12.0000
...)	chr3:95568496-95568721(-)$1	1	39	43	12.0000
(.((	chr2:152137407-152137636(+)$1	1	42	46	12.0000
..((	chr11:77523095-77523336(+)$1	1	172	176	12.0000
(.((	chr12:32172381-32172610(-)$1	1	74	78	12.0000
..((	chr15:88693212-88693452(+)$1	1	109	113	12.0000
.)).	chr8:108188135-108188363(+)$1	1	63	67	12.0000
((((	chr4:41260202-41260427(-)$1	1	61	65	12.0000
((..	chr10:42254433-42254663(+)$1	1	213	217	12.0000
))..	chr5:136410152-136410381(-)$1	1	125	129	12.0000
...)	chr11:86132964-86133190(-)$1	1	38	42	12.0000
((..	chr11:96133160-96133392(+)$1	1	24	28	12.0000
)).)	chr11:62352310-62352534(-)$1	1	96	100	12.0000
))))	chr1:192995259-192995487(-)$1	1	117	121	12.0000
))))	chr14:120902883-120903143(+)$1	1	96	100	12.0000
))).	chrX:109746301-109746523(+)$1	1	204	208	12.0000
((..	chr11:60352133-60352365(+)$1	1	21	25	12.0000
(.((	chr9:31720499-31720726(-)$1	1	98	102	12.0000
))))	chr9:58671273-58671502(+)$1	1	92	96	12.0000
..))	chr10:57956472-57956696(+)$1	1	103	107	12.0000
....	chr3:108240362-108240593(-)$1	1	24	28	12.0000
....	chr18:67561793-67562020(+)$1	1	41	45	12.0000
))))	chr7:52382517-52382748(-)$1	1	186	190	12.0000
(((.	chr10:80493893-80494115(-)$1	1	38	42	12.0000
(...	chr16:17258024-17258251(+)$1	1	62	66	12.0000
(..(	chr6:38448618-38448838(+)$1	1	75	79	12.0000
(((.	chr11:21048372-21048612(+)$1	1	73	77	12.0000
....	chr1:135033166-135033442(+)$1	1	161	165	12.0000
(((.	chrX:71473169-71473396(-)$1	1	8	12	12.0000

#PSSM
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	984.0000000000001
#seq	82
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_CDS_m1_run1.nuc.txt

#NT
UUCUCUUG	chr2:23047922-23048145(+)$1	223	182	190	12.7500
UUGUUUUU	chr7:118221894-118222121(-)$1	227	31	39	14.4166
UUCUUUUU	chr10:20059458-20059718(+)$1	260	34	42	17.9166
UUAUUUUA	chr5:108528063-108528292(+)$1	229	152	160	13.8333
UUCUUUCU	chr9:64574438-64574689(-)$1	251	2	10	13.5000
UUAUUUUA	chr6:51414341-51414573(-)$1	232	13	21	13.8333
uuauuuuu	chr2:5950374-5950609(+)$1	235	11	19	14.8333
UUUUUUUA	chr18:10001698-10001922(-)$1	224	109	117	13.5000
UUCUUUGA	chr5:92502114-92502344(-)$1	230	174	182	12.5000
UUUUUUUG	chr15:66426612-66426843(+)$1	231	4	12	13.3333
UUCUUUUU	chr10:62480209-62480443(-)$1	234	60	68	17.9166
UUCUUUUC	chr10:22429065-22429289(-)$1	224	33	41	16.4166
UUAUUUUA	chr10:57939000-57939229(+)$1	229	83	91	13.8333
UUAUUUUA	chr9:88348980-88349228(-)$1	248	14	22	13.8333
UACUUUUU	chr1:55044697-55044923(-)$1	226	161	169	13.6666
UUCUUUUU	chr4:123062597-123062818(-)$1	221	149	157	17.9166
UUCUUUAU	chr11:49693107-49693335(+)$1	228	29	37	13.4166
uuuuuuuu	chr10:42254433-42254663(+)$1	230	0	8	14.5000
UUCUUGUU	chrX:12868054-12868278(+)$1	224	32	40	13.1666
UUCUCUUG	chr17:85152694-85152922(-)$1	228	50	58	12.7500
UGCUUUUA	chr6:67231566-67231793(+)$1	227	31	39	12.9166
uuauuuUG	chr5:50393102-50393333(-)$1	231	62	70	13.6666
UUUUUUUU	chr9:57378013-57378243(+)$1	230	12	20	14.5000
UUCUUUUG	chr7:118221115-118221346(-)$1	231	73	81	16.7500
UUCUGUUU	chr15:58256315-58256545(+)$1	230	184	192	14.1666
UUCUUUUC	chr11:50192903-50193150(+)$1	247	56	64	16.4166
UUCUUUUC	chr11:74502377-74502632(-)$1	255	159	167	16.4166
UUCUUUUA	chr8:8639326-8639566(-)$1	240	59	67	16.9166
UUCUGUUU	chr2:61560666-61560892(+)$1	226	87	95	14.1666
UUCUGUUU	chrX:91517607-91517835(+)$1	228	44	52	14.1666
UUCUUCUU	chr18:73816748-73816970(-)$1	222	61	69	13.1666
UUCUGUUU	chrX:54044933-54045166(+)$1	233	61	69	14.1666
UUCUUUCU	chr18:34800853-34801077(-)$1	224	19	27	13.5000
ugcuuuug	chr11:52055988-52056214(+)$1	226	14	22	12.7500
UUGUUUUG	chr2:11507207-11507433(-)$1	226	58	66	13.2500
UUCUUUUU	chr11:29109285-29109512(+)$1	227	15	23	17.9166
UUGUUUUG	chr12:77874253-77874477(+)$1	224	138	146	13.2500
UUCUGUUC	chr17:75058521-75058754(+)$1	233	218	226	12.6666
UGCUUUUA	chr11:107358824-107359065(+)$1	241	232	240	12.9166
UUAUUUUA	chr10:79743550-79743794(+)$1	244	222	230	13.8333
UUCUUUUG	chr17:71985809-71986032(+)$1	223	202	210	16.7500
UUCUUUUU	chrX:98863228-98863454(+)$1	226	71	79	17.9166
UUCUUUUU	chr12:77450317-77450548(-)$1	231	149	157	17.9166
UACUUUUU	chr15:43094115-43094343(-)$1	228	86	94	13.6666
UUCUUUUC	chr11:51932631-51932865(+)$1	234	180	188	16.4166
UGCUUUUC	chr5:20515206-20515435(-)$1	229	19	27	12.4166
UGCUUUUC	chr14:57538044-57538270(+)$1	226	4	12	12.4166
UUCUGUUU	chr15:38431144-38431404(-)$1	260	35	43	14.1666
uucuuuuu	chrX:103035172-103035402(-)$1	230	29	37	17.9166
CUCUUUUU	chr11:109523489-109523725(+)$1	236	89	97	13.0833
UUCUUUUA	chr9:88351234-88351619(-)$1	385	40	48	16.9166
UUCUUUUU	chr12:56969085-56969315(+)$1	230	41	49	17.9166
UUCUUUUA	chr18:35732404-35732638(+)$1	234	213	221	16.9166
UUCUUUUC	chr3:106376413-106376641(+)$1	228	63	71	16.4166
UUCUUUUU	chr10:117259753-117259985(-)$1	232	21	29	17.9166
UUCUUUUG	chr18:46683676-46683901(-)$1	225	164	172	16.7500
UUCUCUUG	chr14:32099064-32099292(-)$1	228	12	20	12.7500
UUCUUUGA	chrX:12861203-12861431(+)$1	228	48	56	12.5000
UUAUUUUA	chr19:53995615-53995854(+)$1	239	48	56	13.8333

#otherMatches

#Struct PSSM
gggggggr	chr9:103213730-103213970(+)$1	240	76	84	16.7500
dccc]bb]	chr2:23047922-23048145(+)$1	223	182	190	12.7500
IIIIIIII	chr7:118221894-118222121(-)$1	227	31	39	14.4166
JJJJJJJJ	chr10:20059458-20059718(+)$1	260	34	42	17.9166
cc:fffff	chr5:108528063-108528292(+)$1	229	152	160	13.8333
HHHHHHH{	chr9:64574438-64574689(-)$1	251	2	10	13.5000
gggggmmm	chr6:51414341-51414573(-)$1	232	13	21	13.8333
EEELLLGG	chr2:5950374-5950609(+)$1	235	11	19	14.8333
ffff4444	chr18:10001698-10001922(-)$1	224	109	117	13.5000
ooohhhhh	chr5:92502114-92502344(-)$1	230	174	182	12.5000
JJJJJJJJ	chr15:66426612-66426843(+)$1	231	4	12	13.3333
EEEE{DDD	chr10:62480209-62480443(-)$1	234	60	68	17.9166
ffffnnnn	chr10:22429065-22429289(-)$1	224	33	41	16.4166
::::::::	chr10:57939000-57939229(+)$1	229	83	91	13.8333
eee[hhhh	chr9:88348980-88349228(-)$1	248	14	22	13.8333
dddd::::	chr1:55044697-55044923(-)$1	226	161	169	13.6666
[ffffffl	chr4:123062597-123062818(-)$1	221	149	157	17.9166
d%%%%%%f	chr11:49693107-49693335(+)$1	228	29	37	13.4166
::::::::	chr10:42254433-42254663(+)$1	230	0	8	14.5000
iiiiiiii	chrX:12868054-12868278(+)$1	224	32	40	13.1666
[hhhhhhh	chr17:85152694-85152922(-)$1	228	50	58	12.7500
ggggggg:	chr6:67231566-67231793(+)$1	227	31	39	12.9166
2bbGGGGG	chr5:50393102-50393333(-)$1	231	62	70	13.6666
::::::::	chr9:57378013-57378243(+)$1	230	12	20	14.5000
GGGGG:::	chr7:118221115-118221346(-)$1	231	73	81	16.7500
JJJJJJ??	chr15:58256315-58256545(+)$1	230	184	192	14.1666
!cccmmmm	chr11:50192903-50193150(+)$1	247	56	64	16.4166
^^^^^^^^	chr11:74502377-74502632(-)$1	255	159	167	16.4166
FLLLHHHH	chr8:8639326-8639566(-)$1	240	59	67	16.9166
hhhhhnnn	chr2:61560666-61560892(+)$1	226	87	95	14.1666
===fffff	chrX:91517607-91517835(+)$1	228	44	52	14.1666
:cccmmmm	chr18:73816748-73816970(-)$1	222	61	69	13.1666
ffbb####	chrX:54044933-54045166(+)$1	233	61	69	14.1666
rrrrrrrr	chr18:34800853-34801077(-)$1	224	19	27	13.5000
{CCC::::	chr11:52055988-52056214(+)$1	226	14	22	12.7500
ee$$$$$g	chr2:11507207-11507433(-)$1	226	58	66	13.2500
DDDDLLLE	chr11:29109285-29109512(+)$1	227	15	23	17.9166
ggggggg4	chr12:77874253-77874477(+)$1	224	138	146	13.2500
HHHHH:::	chr17:75058521-75058754(+)$1	233	218	226	12.6666
mmmmeeee	chr11:107358824-107359065(+)$1	241	232	240	12.9166
fffqqqqq	chr10:79743550-79743794(+)$1	244	222	230	13.8333
YYGGGGGG	chr17:71985809-71986032(+)$1	223	202	210	16.7500
iiiiiiff	chrX:98863228-98863454(+)$1	226	71	79	17.9166
========	chr12:77450317-77450548(-)$1	231	149	157	17.9166
DDD{EEEE	chr15:43094115-43094343(-)$1	228	86	94	13.6666
========	chr11:51932631-51932865(+)$1	234	180	188	16.4166
KDDDD{FF	chr5:20515206-20515435(-)$1	229	19	27	12.4166
::CCC{DD	chr14:57538044-57538270(+)$1	226	4	12	12.4166
ff22bb]c	chr15:38431144-38431404(-)$1	260	35	43	14.1666
GGGG{BBJ	chrX:103035172-103035402(-)$1	230	29	37	17.9166
:iiiiiii	chr11:109523489-109523725(+)$1	236	89	97	13.0833
LEEEEEDD	chr9:88351234-88351619(-)$1	385	40	48	16.9166
ff22ffff	chr12:56969085-56969315(+)$1	230	41	49	17.9166
HHHHHHHH	chr18:35732404-35732638(+)$1	234	213	221	16.9166
:::ggggg	chr3:106376413-106376641(+)$1	228	63	71	16.4166
ffff[bb[	chr10:117259753-117259985(-)$1	232	21	29	17.9166
44eeeee]	chr18:46683676-46683901(-)$1	225	164	172	16.7500
dddbb[a[	chr14:32099064-32099292(-)$1	228	12	20	12.7500
EEEEEOOO	chrX:12861203-12861431(+)$1	228	48	56	12.5000
uuuuuuuu	chr19:53995615-53995854(+)$1	239	48	56	13.8333

#DB
(((((((.	chr9:103213730-103213970(+)$1	1	76	84	16.7500
)))).)).	chr2:23047922-23048145(+)$1	1	182	190	12.7500
((((((((	chr7:118221894-118222121(-)$1	1	31	39	14.4166
((((((((	chr10:20059458-20059718(+)$1	1	34	42	17.9166
)).(((((	chr5:108528063-108528292(+)$1	1	152	160	13.8333
(((((((.	chr9:64574438-64574689(-)$1	1	2	10	13.5000
(((((...	chr6:51414341-51414573(-)$1	1	13	21	13.8333
(((...((	chr2:5950374-5950609(+)$1	1	11	19	14.8333
))))....	chr18:10001698-10001922(-)$1	1	109	117	13.5000
...)))))	chr5:92502114-92502344(-)$1	1	174	182	12.5000
((((((((	chr15:66426612-66426843(+)$1	1	4	12	13.3333
((((.(((	chr10:62480209-62480443(-)$1	1	60	68	17.9166
((((....	chr10:22429065-22429289(-)$1	1	33	41	16.4166
........	chr10:57939000-57939229(+)$1	1	83	91	13.8333
(((.((((	chr9:88348980-88349228(-)$1	1	14	22	13.8333
))))....	chr1:55044697-55044923(-)$1	1	161	169	13.6666
.((((((.	chr4:123062597-123062818(-)$1	1	149	157	17.9166
(......(	chr11:49693107-49693335(+)$1	1	29	37	13.4166
........	chr10:42254433-42254663(+)$1	1	0	8	14.5000
((((((((	chrX:12868054-12868278(+)$1	1	32	40	13.1666
.(((((((	chr17:85152694-85152922(-)$1	1	50	58	12.7500
))))))).	chr6:67231566-67231793(+)$1	1	31	39	12.9166
.))(((((	chr5:50393102-50393333(-)$1	1	62	70	13.6666
........	chr9:57378013-57378243(+)$1	1	12	20	14.5000
(((((...	chr7:118221115-118221346(-)$1	1	73	81	16.7500
))))))..	chr15:58256315-58256545(+)$1	1	184	192	14.1666
.(((....	chr11:50192903-50193150(+)$1	1	56	64	16.4166
........	chr11:74502377-74502632(-)$1	1	159	167	16.4166
(...((((	chr8:8639326-8639566(-)$1	1	59	67	16.9166
(((((...	chr2:61560666-61560892(+)$1	1	87	95	14.1666
((((((((	chrX:91517607-91517835(+)$1	1	44	52	14.1666
.(((....	chr18:73816748-73816970(-)$1	1	61	69	13.1666
((((....	chrX:54044933-54045166(+)$1	1	61	69	14.1666
........	chr18:34800853-34801077(-)$1	1	19	27	13.5000
.(((....	chr11:52055988-52056214(+)$1	1	14	22	12.7500
((.....(	chr2:11507207-11507433(-)$1	1	58	66	13.2500
((((...(	chr11:29109285-29109512(+)$1	1	15	23	17.9166
))))))).	chr12:77874253-77874477(+)$1	1	138	146	13.2500
)))))...	chr17:75058521-75058754(+)$1	1	218	226	12.6666
....))))	chr11:107358824-107359065(+)$1	1	232	240	12.9166
(((.....	chr10:79743550-79743794(+)$1	1	222	230	13.8333
..))))))	chr17:71985809-71986032(+)$1	1	202	210	16.7500
((((((((	chrX:98863228-98863454(+)$1	1	71	79	17.9166
((((((((	chr12:77450317-77450548(-)$1	1	149	157	17.9166
(((.((((	chr15:43094115-43094343(-)$1	1	86	94	13.6666
((((((((	chr11:51932631-51932865(+)$1	1	180	188	16.4166
.((((.((	chr5:20515206-20515435(-)$1	1	19	27	12.4166
..(((.((	chr14:57538044-57538270(+)$1	1	4	12	12.4166
))..)).)	chr15:38431144-38431404(-)$1	1	35	43	14.1666
((((.(((	chrX:103035172-103035402(-)$1	1	29	37	17.9166
.(((((((	chr11:109523489-109523725(+)$1	1	89	97	13.0833
.(((((((	chr9:88351234-88351619(-)$1	1	40	48	16.9166
))..))))	chr12:56969085-56969315(+)$1	1	41	49	17.9166
))))))))	chr18:35732404-35732638(+)$1	1	213	221	16.9166
...(((((	chr3:106376413-106376641(+)$1	1	63	71	16.4166
((((.((.	chr10:117259753-117259985(-)$1	1	21	29	17.9166
..))))).	chr18:46683676-46683901(-)$1	1	164	172	16.7500
(((((.(.	chr14:32099064-32099292(-)$1	1	12	20	12.7500
(((((...	chrX:12861203-12861431(+)$1	1	48	56	12.5000
........	chr19:53995615-53995854(+)$1	1	48	56	13.8333

#PSSM
U : 0.90	u : 0.08	C : 0.01	
U : 0.81	u : 0.06	G : 0.06	A : 0.03	g : 0.01	
C : 0.71	A : 0.09	G : 0.05	U : 0.05	a : 0.03	c : 0.03	u : 0.01	
U : 0.91	u : 0.08	
U : 0.76	G : 0.09	u : 0.08	C : 0.05	
U : 0.88	u : 0.08	G : 0.01	C : 0.01	
U : 0.85	u : 0.06	C : 0.03	G : 0.03	A : 0.01	
U : 0.38	A : 0.23	G : 0.18	C : 0.13	u : 0.05	g : 0.01	

#score	886.6666666666675
#seq	60
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_UTR_m1_run2.nuc.txt

#NT
CUUGUUU	chr7:91258242-91258458(-)$1	216	144	151	13.6086
CUUAGUU	chr1:133829056-133829274(+)$1	218	44	51	12.0869
CUUGCUU	chr19:12841731-12841943(-)$1	212	21	28	12.9565
CUUGUUU	chr5:89212125-89212338(+)$1	213	76	83	13.6086
AUUGGUU	chr8:24347985-24348203(-)$1	218	26	33	12.8478
CUUGGCU	chr14:41720341-41720551(-)$1	210	86	93	13.1739
CUUGGGU	chr7:97357116-97357335(+)$1	219	154	161	13.3913
CUGGGUU	chr2:32476087-32476301(+)$1	214	2	9	12.5217
AUUGGUU	chr14:51526385-51526598(-)$1	213	125	132	12.8478
CUUGGUG	chr11:80216437-80216654(+)$1	217	76	83	12.3043
CUUGGAU	chr4:81939944-81940162(-)$1	218	188	195	13.1739
CUUGGUG	chr12:118995303-118995521(+)$1	218	39	46	12.3043
AUUGGUU	chr4:82872343-82872559(-)$1	216	97	104	12.8478
cuugauu	chr9:123370972-123371208(+)$1	236	9	16	13.1739
CUUGGAU	chr2:103606413-103606629(-)$1	216	32	39	13.1739
CUUGGUC	chr1:60204715-60204925(+)$1	210	99	106	12.1956
CUUGGGU	chr4:154938132-154938350(+)$1	218	166	173	13.3913
UUUGGUU	chr6:122678680-122678895(-)$1	215	9	16	12.7391
CUUGGCU	chr3:22111276-22111493(+)$1	217	81	88	13.1739
CUUGGUU	chr12:82049177-82049399(+)$1	222	6	13	16.6521
CAUGGUU	chr8:125408072-125408283(-)$1	211	190	197	11.8695
CUUGGUU	chr11:53233621-53233832(+)$1	211	89	96	16.6521
CUGGGUU	chr7:4097985-4098201(+)$1	216	61	68	12.5217
AUUGGUU	chr10:18575962-18576178(+)$1	216	202	209	12.8478
CUUGUUU	chr12:58340328-58340551(+)$1	223	83	90	13.6086
CUUGGUA	chr9:120868687-120868898(+)$1	211	25	32	12.1956
CUGGGUU	chr11:77993095-77993313(-)$1	218	109	116	12.5217
CUUGGGU	chr2:158324054-158324267(+)$1	213	192	199	13.3913
CUUGUUU	chr1:84720974-84721191(-)$1	217	199	206	13.6086
CUUGGAU	chr11:88692565-88692783(-)$1	218	107	114	13.1739
CUUGUUU	chr18:3512926-3513139(+)$1	213	186	193	13.6086
UUUGGUU	chr2:31472011-31472227(+)$1	216	62	69	12.7391
CUUGGUU	chr8:18712009-18712234(+)$1	225	202	209	16.6521
CUUGAUU	chr19:7611647-7611862(+)$1	215	9	16	13.1739
CUGGGUU	chr9:61907532-61907746(-)$1	214	17	24	12.5217
UUUGGUU	chr2:90858216-90858434(+)$1	218	49	56	12.7391
CUUGGUU	chr2:121837421-121837640(+)$1	219	117	124	16.6521
CUUGUUU	chr16:32388338-32388558(+)$1	220	2	9	13.6086
CUUGAUU	chr2:22796071-22796284(-)$1	213	40	47	13.1739
CUUAGUU	chr9:51895045-51895263(+)$1	218	184	191	12.0869
CUUGUUU	chr6:122678524-122678735(-)$1	211	8	15	13.6086
CUUGGGU	chr7:5035195-5035408(+)$1	213	12	19	13.3913
CUUGGGU	chr1:133828486-133828705(+)$1	219	100	107	13.3913
CUUGGUU	chr15:103023421-103023640(-)$1	219	40	47	16.6521
CUUGGCU	chr7:111367245-111367459(+)$1	214	105	112	13.1739

#otherMatches

#Struct PSSM
333eeee	chr4:132754449-132754660(+)$1	211	100	107	16.6521
nnngggg	chr7:91258242-91258458(-)$1	216	144	151	13.6086
OOOOODD	chr1:133829056-133829274(+)$1	218	44	51	12.0869
&&dddd[	chr19:12841731-12841943(-)$1	212	21	28	12.9565
dddd:ee	chr5:89212125-89212338(+)$1	213	76	83	13.6086
JJJJJJ{	chr8:24347985-24348203(-)$1	218	26	33	12.8478
b]ccc::	chr14:41720341-41720551(-)$1	210	86	93	13.1739
CCCYYJJ	chr7:97357116-97357335(+)$1	219	154	161	13.3913
::FFFFF	chr2:32476087-32476301(+)$1	214	2	9	12.5217
hhhffff	chr14:51526385-51526598(-)$1	213	125	132	12.8478
777dddd	chr11:80216437-80216654(+)$1	217	76	83	12.3043
IIIFFFF	chr4:81939944-81940162(-)$1	218	188	195	13.1739
eeeeezz	chr12:118995303-118995521(+)$1	218	39	46	12.3043
cnnnnnc	chr4:82872343-82872559(-)$1	216	97	104	12.8478
::cccll	chr9:123370972-123371208(+)$1	236	9	16	13.1739
cgggggg	chr2:103606413-103606629(-)$1	216	32	39	13.1739
nnna22d	chr1:60204715-60204925(+)$1	210	99	106	12.1956
=======	chr4:154938132-154938350(+)$1	218	166	173	13.3913
!!dddd$	chr6:122678680-122678895(-)$1	215	9	16	12.7391
mmdddd]	chr3:22111276-22111493(+)$1	217	81	88	13.1739
EEEMMMM	chr12:82049177-82049399(+)$1	222	6	13	16.6521
ccc[ddd	chr8:125408072-125408283(-)$1	211	190	197	11.8695
2ddddEE	chr11:53233621-53233832(+)$1	211	89	96	16.6521
fffff::	chr7:4097985-4098201(+)$1	216	61	68	12.5217
CCC}DDD	chr10:18575962-18576178(+)$1	216	202	209	12.8478
b!!annn	chr12:58340328-58340551(+)$1	223	83	90	13.6086
::ggggg	chr9:120868687-120868898(+)$1	211	25	32	12.1956
eeeee44	chr11:77993095-77993313(-)$1	218	109	116	12.5217
mmfffff	chr2:158324054-158324267(+)$1	213	192	199	13.3913
HHHHHH:	chr1:84720974-84721191(-)$1	217	199	206	13.6086
ddd4444	chr11:88692565-88692783(-)$1	218	107	114	13.1739
bqqqqqq	chr18:3512926-3513139(+)$1	213	186	193	13.6086
JJJJJMM	chr2:31472011-31472227(+)$1	216	62	69	12.7391
CCFFFFF	chr8:18712009-18712234(+)$1	225	202	209	16.6521
ffffffy	chr19:7611647-7611862(+)$1	215	9	16	13.1739
dddoooo	chr9:61907532-61907746(-)$1	214	17	24	12.5217
FFFgggg	chr2:90858216-90858434(+)$1	218	49	56	12.7391
dddddd[	chr2:121837421-121837640(+)$1	219	117	124	16.6521
:bb[hhh	chr16:32388338-32388558(+)$1	220	2	9	13.6086
gggoooo	chr2:22796071-22796284(-)$1	213	40	47	13.1739
DZZZCCC	chr9:51895045-51895263(+)$1	218	184	191	12.0869
sssssss	chr6:122678524-122678735(-)$1	211	8	15	13.6086
Eeeeee[	chr7:5035195-5035408(+)$1	213	12	19	13.3913
ttggggg	chr1:133828486-133828705(+)$1	219	100	107	13.3913
gggggge	chr15:103023421-103023640(-)$1	219	40	47	16.6521
ddddmmm	chr7:111367245-111367459(+)$1	214	105	112	13.1739

#DB
...))))	chr4:132754449-132754660(+)$1	1	100	107	16.6521
...))))	chr7:91258242-91258458(-)$1	1	144	151	13.6086
.....((	chr1:133829056-133829274(+)$1	1	44	51	12.0869
..((((.	chr19:12841731-12841943(-)$1	1	21	28	12.9565
)))).((	chr5:89212125-89212338(+)$1	1	76	83	13.6086
((((((.	chr8:24347985-24348203(-)$1	1	26	33	12.8478
).)))..	chr14:41720341-41720551(-)$1	1	86	93	13.1739
)))..))	chr7:97357116-97357335(+)$1	1	154	161	13.3913
..(((((	chr2:32476087-32476301(+)$1	1	2	9	12.5217
)))((((	chr14:51526385-51526598(-)$1	1	125	132	12.8478
...))))	chr11:80216437-80216654(+)$1	1	76	83	12.3043
)))))))	chr4:81939944-81940162(-)$1	1	188	195	13.1739
(((((..	chr12:118995303-118995521(+)$1	1	39	46	12.3043
(.....)	chr4:82872343-82872559(-)$1	1	97	104	12.8478
..(((..	chr9:123370972-123371208(+)$1	1	9	16	13.1739
(((((((	chr2:103606413-103606629(-)$1	1	32	39	13.1739
...)..)	chr1:60204715-60204925(+)$1	1	99	106	12.1956
)))))))	chr4:154938132-154938350(+)$1	1	166	173	13.3913
..((((.	chr6:122678680-122678895(-)$1	1	9	16	12.7391
..)))).	chr3:22111276-22111493(+)$1	1	81	88	13.1739
(((....	chr12:82049177-82049399(+)$1	1	6	13	16.6521
(((.(((	chr8:125408072-125408283(-)$1	1	190	197	11.8695
.))))))	chr11:53233621-53233832(+)$1	1	89	96	16.6521
)))))..	chr7:4097985-4098201(+)$1	1	61	68	12.5217
))).)))	chr10:18575962-18576178(+)$1	1	202	209	12.8478
(..(...	chr12:58340328-58340551(+)$1	1	83	90	13.6086
..(((((	chr9:120868687-120868898(+)$1	1	25	32	12.1956
)))))..	chr11:77993095-77993313(-)$1	1	109	116	12.5217
..)))))	chr2:158324054-158324267(+)$1	1	192	199	13.3913
)))))).	chr1:84720974-84721191(-)$1	1	199	206	13.6086
)))....	chr11:88692565-88692783(-)$1	1	107	114	13.1739
(......	chr18:3512926-3513139(+)$1	1	186	193	13.6086
(((((..	chr2:31472011-31472227(+)$1	1	62	69	12.7391
)))))))	chr8:18712009-18712234(+)$1	1	202	209	16.6521
((((((.	chr19:7611647-7611862(+)$1	1	9	16	13.1739
(((....	chr9:61907532-61907746(-)$1	1	17	24	12.5217
(((((((	chr2:90858216-90858434(+)$1	1	49	56	12.7391
((((((.	chr2:121837421-121837640(+)$1	1	117	124	16.6521
.((.(((	chr16:32388338-32388558(+)$1	1	2	9	13.6086
(((....	chr2:22796071-22796284(-)$1	1	40	47	13.1739
)...)))	chr9:51895045-51895263(+)$1	1	184	191	12.0869
.......	chr6:122678524-122678735(-)$1	1	8	15	13.6086
((((((.	chr7:5035195-5035408(+)$1	1	12	19	13.3913
..)))))	chr1:133828486-133828705(+)$1	1	100	107	13.3913
))))))(	chr15:103023421-103023640(-)$1	1	40	47	16.6521
((((...	chr7:111367245-111367459(+)$1	1	105	112	13.1739

#PSSM
C : 0.82	A : 0.08	U : 0.06	c : 0.02	
U : 0.95	u : 0.02	A : 0.02	
U : 0.89	G : 0.08	u : 0.02	
G : 0.93	A : 0.04	g : 0.02	
G : 0.76	U : 0.15	A : 0.04	C : 0.02	a : 0.02	
U : 0.73	G : 0.10	C : 0.06	A : 0.06	u : 0.02	
U : 0.89	G : 0.04	u : 0.02	C : 0.02	A : 0.02	

#score	618.3913043478257
#seq	46
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_UTR_m3_run1.nuc.txt

#NT
UGUUUCUUU	chr13:63383383-63383603(+)$1	220	48	57	15.6458
UGUUUCUUU	chr2:156005632-156005842(-)$1	210	53	62	15.6458
UGUUCAUUU	chr2:51977051-51977263(+)$1	212	197	206	12.6250
UGUAUACUU	chr19:32898731-32898948(+)$1	217	26	35	10.3333
UGUGUUCUU	chr11:109262036-109262259(+)$1	223	113	122	12.1041
UGUUAUUGU	chr17:34993312-34993536(+)$1	224	7	16	11.2708
GGUUUAUUU	chrX:7469918-7470133(+)$1	215	199	208	11.7916
UGUUUUAUU	chr4:24539662-24539877(+)$1	215	19	28	15.0208
AGUUUUUGU	chr11:108782046-108782266(+)$1	220	87	96	10.5416
uguuauuuc	chr4:56889946-56890155(-)$1	209	128	137	10.6458
UGUUUAUUG	chr1:9714324-9714535(-)$1	211	1	10	12.1041
uguuuuuuu	chr7:30562719-30562928(+)$1	209	178	187	18.4583
UGUGUUUCU	chr11:86170950-86171173(-)$1	223	66	75	12.1041
AGUUAUUUU	chr5:108535691-108535904(+)$1	213	150	159	10.4375
UGGUUUUUA	chr4:132753811-132754024(+)$1	213	5	14	9.9166
UAUUUAUUU	chr7:150699813-150700032(-)$1	219	36	45	11.9999
UGAUUUUUG	chr19:39042544-39042762(+)$1	218	173	182	10.2291
UAUAUUUUU	chr13:97408636-97408848(+)$1	212	17	26	11.4791
UGUUUUGCU	chr19:44380402-44380619(+)$1	217	85	94	11.8958
GGUUUAUUU	chr7:88060556-88060778(-)$1	222	9	18	11.7916
UGUUUGAUU	chr12:77493540-77493754(+)$1	214	94	103	12.2083
UGUAUUUUU	chr3:105770878-105771096(+)$1	218	141	150	15.6458
uauauuuuu	chr17:41070038-41070254(-)$1	216	70	79	11.4791
UGUUUCCUU	chr11:95625616-95625833(+)$1	217	73	82	12.6250
UGUUUUUUU	chr9:96977267-96977484(-)$1	217	151	160	18.4583
ugucuuucu	chrM:6767-6982(+)$1	215	161	170	12.0000
UGUUUAUCU	chr17:27069000-27069212(+)$1	212	31	40	13.1458
UGUAUUGUU	chr2:52997946-52998156(-)$1	210	62	71	12.1041
UGUAUGUUU	chr15:81680287-81680498(-)$1	211	72	81	12.8333
UGAUUGUUU	chr13:67098421-67098640(+)$1	219	15	24	11.4791
UGUUAAUUU	chr7:109334379-109334599(-)$1	220	14	23	12.5208
UGuuuuuuu	chr11:117715929-117716138(+)$1	209	167	176	18.4583
UGUCUUCUU	chr13:9170887-9171101(+)$1	214	202	211	12.0000
UGUUUUUUU	chr3:97476847-97477064(+)$1	217	165	174	18.4583
UGUAUUCUU	chr4:123216950-123217164(-)$1	214	178	187	12.6250
UGGUUUUCU	chr8:72656387-72656607(+)$1	220	197	206	11.1666
UCUUUUUCU	chr8:109936443-109936662(-)$1	219	130	139	11.0624
UGUUCAUUU	chr4:132383289-132383506(-)$1	217	127	136	12.6250
UGuucuucu	chr8:26928289-26928507(-)$1	218	189	198	11.8958
UGUAUUCUU	chr2:121281988-121282206(+)$1	218	60	69	12.6250
UUUUCUUUU	chr5:28742883-28743103(+)$1	220	13	22	10.5416
UGUUUGAUU	chr13:74496054-74496272(+)$1	218	71	80	12.2083
UGUGUCUUU	chr2:122572299-122572517(+)$1	218	187	196	12.3125
UGUUUUUUG	chr1:136528094-136528308(+)$1	214	99	108	14.3958
UGUUUUUGU	chr15:102263076-102263290(+)$1	214	195	204	14.9166
UGUUCUUUU	chr19:4793757-4793970(-)$1	213	181	190	14.9166
UGUUUUCCU	chr15:79358919-79359139(-)$1	220	191	200	12.4166

#otherMatches

#Struct PSSM
eeeeessss	chr1:43131677-43131890(-)$1	213	183	192	10.1249
fbb[hhhhh	chr13:63383383-63383603(+)$1	220	48	57	15.6458
bb!!cccll	chr2:156005632-156005842(-)$1	210	53	62	15.6458
DDDDD}III	chr2:51977051-51977263(+)$1	212	197	206	12.6250
FFFFFBB{C	chr19:32898731-32898948(+)$1	217	26	35	10.3333
iiiii[ccc	chr11:109262036-109262259(+)$1	223	113	122	12.1041
!dddd!!bb	chr17:34993312-34993536(+)$1	224	7	16	11.2708
HHHHHIIII	chrX:7469918-7470133(+)$1	215	199	208	11.7916
eeeeemmmm	chr4:24539662-24539877(+)$1	215	19	28	15.0208
qqqqqccc]	chr11:108782046-108782266(+)$1	220	87	96	10.5416
mccc::eee	chr4:56889946-56890155(-)$1	209	128	137	10.6458
gggggglll	chr1:9714324-9714535(-)$1	211	1	10	12.1041
:::::::::	chr7:30562719-30562928(+)$1	209	178	187	18.4583
e[bb!!bbp	chr11:86170950-86171173(-)$1	223	66	75	12.1041
ggggggg::	chr5:108535691-108535904(+)$1	213	150	159	10.4375
JJJJJJ:::	chr4:132753811-132754024(+)$1	213	5	14	9.9166
wwwwwwwww	chr7:150699813-150700032(-)$1	219	36	45	11.9999
:::::eeee	chr19:39042544-39042762(+)$1	218	173	182	10.2291
ELLLHHHHH	chr13:97408636-97408848(+)$1	212	17	26	11.4791
]ggggggg:	chr19:44380402-44380619(+)$1	217	85	94	11.8958
DDD{CCC{F	chr7:88060556-88060778(-)$1	222	9	18	11.7916
cc####hhh	chr12:77493540-77493754(+)$1	214	94	103	12.2083
oooooohhh	chr3:105770878-105771096(+)$1	218	141	150	15.6458
g::::ffff	chr17:41070038-41070254(-)$1	216	70	79	11.4791
:::eeeeet	chr11:95625616-95625833(+)$1	217	73	82	12.6250
=========	chr9:96977267-96977484(-)$1	217	151	160	18.4583
ggggggppp	chrM:6767-6982(+)$1	215	161	170	12.0000
cchhhhhhh	chr17:27069000-27069212(+)$1	212	31	40	13.1458
ffffff444	chr2:52997946-52998156(-)$1	210	62	71	12.1041
ddd:::::e	chr15:81680287-81680498(-)$1	211	72	81	12.8333
qqqqqqqff	chr13:67098421-67098640(+)$1	219	15	24	11.4791
GGKKBB::e	chr7:109334379-109334599(-)$1	220	14	23	12.5208
^^^^^^^^^	chr11:117715929-117716138(+)$1	209	167	176	18.4583
:::::::::	chr13:9170887-9171101(+)$1	214	202	211	12.0000
nhhhhhhhh	chr3:97476847-97477064(+)$1	217	165	174	18.4583
cc[gggggg	chr4:123216950-123217164(-)$1	214	178	187	12.6250
gggvvvvvv	chr8:72656387-72656607(+)$1	220	197	206	11.1666
rhhhhhhhh	chr8:109936443-109936662(-)$1	219	130	139	11.0624
&&dddd"""	chr4:132383289-132383506(-)$1	217	127	136	12.6250
====!!bbm	chr8:26928289-26928507(-)$1	218	189	198	11.8958
ggg::::::	chr2:121281988-121282206(+)$1	218	60	69	12.6250
:ffffffmm	chr5:28742883-28743103(+)$1	220	13	22	10.5416
hhhhhhnnn	chr13:74496054-74496272(+)$1	218	71	80	12.2083
G}A}HHHHH	chr2:122572299-122572517(+)$1	218	187	196	12.3125
dddnnnnnd	chr1:136528094-136528308(+)$1	214	99	108	14.3958
oeeeee:::	chr15:102263076-102263290(+)$1	214	195	204	14.9166
ddd777777	chr19:4793757-4793970(-)$1	213	181	190	14.9166
dd22fffff	chr15:79358919-79359139(-)$1	220	191	200	12.4166

#DB
(((((....	chr1:43131677-43131890(-)$1	1	183	192	10.1249
(((.(((((	chr13:63383383-63383603(+)$1	1	48	57	15.6458
((..(((..	chr2:156005632-156005842(-)$1	1	53	62	15.6458
))))).)))	chr2:51977051-51977263(+)$1	1	197	206	12.6250
(((((((.(	chr19:32898731-32898948(+)$1	1	26	35	10.3333
(((((.(((	chr11:109262036-109262259(+)$1	1	113	122	12.1041
.((((..((	chr17:34993312-34993536(+)$1	1	7	16	11.2708
)))))))))	chrX:7469918-7470133(+)$1	1	199	208	11.7916
(((((....	chr4:24539662-24539877(+)$1	1	19	28	15.0208
.....))).	chr11:108782046-108782266(+)$1	1	87	96	10.5416
.)))..(((	chr4:56889946-56890155(-)$1	1	128	137	10.6458
((((((...	chr1:9714324-9714535(-)$1	1	1	10	12.1041
.........	chr7:30562719-30562928(+)$1	1	178	187	18.4583
(.((..((.	chr11:86170950-86171173(-)$1	1	66	75	12.1041
)))))))..	chr5:108535691-108535904(+)$1	1	150	159	10.4375
((((((...	chr4:132753811-132754024(+)$1	1	5	14	9.9166
.........	chr7:150699813-150700032(-)$1	1	36	45	11.9999
.....((((	chr19:39042544-39042762(+)$1	1	173	182	10.2291
(...(((((	chr13:97408636-97408848(+)$1	1	17	26	11.4791
.))))))).	chr19:44380402-44380619(+)$1	1	85	94	11.8958
(((.(((.(	chr7:88060556-88060778(-)$1	1	9	18	11.7916
((....(((	chr12:77493540-77493754(+)$1	1	94	103	12.2083
......)))	chr3:105770878-105771096(+)$1	1	141	150	15.6458
)....((((	chr17:41070038-41070254(-)$1	1	70	79	11.4791
...(((((.	chr11:95625616-95625833(+)$1	1	73	82	12.6250
)))))))))	chr9:96977267-96977484(-)$1	1	151	160	18.4583
((((((...	chrM:6767-6982(+)$1	1	161	170	12.0000
(((((((((	chr17:27069000-27069212(+)$1	1	31	40	13.1458
))))))...	chr2:52997946-52998156(-)$1	1	62	71	12.1041
))).....(	chr15:81680287-81680498(-)$1	1	72	81	12.8333
.......))	chr13:67098421-67098640(+)$1	1	15	24	11.4791
((..((..(	chr7:109334379-109334599(-)$1	1	14	23	12.5208
.........	chr11:117715929-117716138(+)$1	1	167	176	18.4583
.........	chr13:9170887-9171101(+)$1	1	202	211	12.0000
.))))))))	chr3:97476847-97477064(+)$1	1	165	174	18.4583
((.((((((	chr4:123216950-123217164(-)$1	1	178	187	12.6250
(((......	chr8:72656387-72656607(+)$1	1	197	206	11.1666
.))))))))	chr8:109936443-109936662(-)$1	1	130	139	11.0624
..((((...	chr4:132383289-132383506(-)$1	1	127	136	12.6250
((((..((.	chr8:26928289-26928507(-)$1	1	189	198	11.8958
)))......	chr2:121281988-121282206(+)$1	1	60	69	12.6250
.((((((..	chr5:28742883-28743103(+)$1	1	13	22	10.5416
((((((...	chr13:74496054-74496272(+)$1	1	71	80	12.2083
).).)))))	chr2:122572299-122572517(+)$1	1	187	196	12.3125
(((.....)	chr1:136528094-136528308(+)$1	1	99	108	14.3958
.)))))...	chr15:102263076-102263290(+)$1	1	195	204	14.9166
)))......	chr19:4793757-4793970(-)$1	1	181	190	14.9166
))..)))))	chr15:79358919-79359139(-)$1	1	191	200	12.4166

#PSSM
U : 0.81	u : 0.10	G : 0.04	A : 0.04	
G : 0.81	g : 0.08	A : 0.04	a : 0.02	C : 0.02	U : 0.02	
U : 0.77	u : 0.12	G : 0.04	A : 0.04	a : 0.02	
U : 0.62	A : 0.14	u : 0.10	G : 0.06	a : 0.02	c : 0.02	C : 0.02	
U : 0.70	u : 0.10	C : 0.08	A : 0.06	a : 0.02	c : 0.02	
U : 0.49	A : 0.18	u : 0.14	C : 0.08	G : 0.08	
U : 0.60	u : 0.14	C : 0.14	A : 0.06	G : 0.04	
U : 0.66	C : 0.12	u : 0.10	G : 0.06	c : 0.04	
U : 0.77	u : 0.10	G : 0.06	c : 0.04	A : 0.02	

#score	613.2916666666665
#seq	48
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_CDS_m2_run2.nuc.txt

#NT
AGA	chr11:3035377-3035597(-)$1	220	37	40	8.9999
AGA	chr16:96282559-96282776(-)$1	217	28	31	8.9999
AGA	chr4:40208587-40208805(-)$1	218	15	18	8.9999
AGA	chr5:108244745-108244962(-)$1	217	14	17	8.9999
AGA	chr11:72260570-72260790(+)$1	220	116	119	8.9999
AGA	chr17:28018374-28018591(+)$1	217	27	30	8.9999
AGA	chr9:30972107-30972318(-)$1	211	29	32	8.9999
AGA	chr12:21333852-21334063(-)$1	211	8	11	8.9999
AGA	chr10:70691745-70691956(-)$1	211	158	161	8.9999
AGA	chr2:130511419-130511641(-)$1	222	1	4	8.9999
AGA	chrX:108773314-108773532(-)$1	218	45	48	8.9999
AGA	chr10:127789979-127790190(+)$1	211	54	57	8.9999
AGA	chr7:118218318-118218537(-)$1	219	0	3	8.9999
AGA	chr17:15093675-15093885(-)$1	210	34	37	8.9999
AGA	chr17:88383880-88384094(+)$1	214	14	17	8.9999
AGA	chr1:24619252-24619471(+)$1	219	9	12	8.9999
aga	chr4:146163917-146164129(+)$1	212	53	56	8.9999
AGA	chr11:17847742-17847954(-)$1	212	1	4	8.9999
AGA	chrX:72356042-72356264(-)$1	222	46	49	8.9999
AGA	chrM:6376-6595(+)$1	219	165	168	8.9999
AGA	chr9:43960908-43961120(-)$1	212	32	35	8.9999
AGA	chr1:72362031-72362245(+)$1	214	6	9	8.9999
AGA	chr17:35273057-35273278(+)$1	221	0	3	8.9999
AGA	chr5:20503649-20503873(-)$1	224	1	4	8.9999
AGA	chr17:35646962-35647178(+)$1	216	18	21	8.9999
AGA	chr14:35552369-35552585(+)$1	216	61	64	8.9999
AGA	chr1:44230994-44231215(+)$1	221	62	65	8.9999
AGA	chr2:73746583-73746800(-)$1	217	34	37	8.9999
AGA	chr19:5365807-5366025(-)$1	218	108	111	8.9999
AGA	chr16:57146127-57146345(+)$1	218	77	80	8.9999
AGA	chr3:96073686-96073903(+)$1	217	22	25	8.9999
AGA	chr5:102336495-102336705(-)$1	210	36	39	8.9999
AGA	chr11:83594615-83594839(+)$1	224	117	120	8.9999
AGA	chr6:82677292-82677504(-)$1	212	76	79	8.9999
AGA	chr8:89384812-89385022(+)$1	210	15	18	8.9999
AGA	chr15:37921761-37921977(-)$1	216	38	41	8.9999
AGA	chr13:55553007-55553226(+)$1	219	12	15	8.9999
AGA	chr17:75058528-75058743(+)$1	215	127	130	8.9999
AGA	chr11:57866066-57866285(+)$1	219	27	30	8.9999
AGA	chr4:123148437-123148650(-)$1	213	18	21	8.9999
AGA	chr4:126989402-126989614(-)$1	212	15	18	8.9999
AGA	chrM:12868-13097(-)$1	229	32	35	8.9999
AGA	chr3:123045954-123046178(+)$1	224	18	21	8.9999
AGA	chr14:21350934-21351158(-)$1	224	113	116	8.9999
AGA	chr7:29800757-29800972(-)$1	215	76	79	8.9999
AGA	chr2:119773189-119773408(+)$1	219	29	32	8.9999
AGA	chr10:127548089-127548304(+)$1	215	19	22	8.9999
AGA	chr5:92485239-92485462(-)$1	223	41	44	8.9999
AGA	chr11:29111068-29111279(+)$1	211	49	52	8.9999
AGA	chr6:126790539-126790758(-)$1	219	99	102	8.9999
AGA	chr5:21181753-21181964(-)$1	211	56	59	8.9999
AGA	chr4:147262679-147262894(-)$1	215	39	42	8.9999
AGA	chrX:148701308-148701524(+)$1	216	4	7	8.9999
AGA	chr9:36549288-36549506(-)$1	218	52	55	8.9999
AGA	chr5:45894552-45894768(+)$1	216	64	67	8.9999
AGA	chrX:12714644-12714867(+)$1	223	87	90	8.9999
AGA	chr9:66220257-66220474(+)$1	217	77	80	8.9999
AGA	chr9:98497210-98497428(-)$1	218	4	7	8.9999
AGA	chr19:5901137-5901353(-)$1	216	173	176	8.9999
AGA	chr16:62811743-62811957(-)$1	214	37	40	8.9999
AGA	chrX:12681729-12681959(+)$1	230	38	41	8.9999
agA	chr3:88512732-88512943(+)$1	211	69	72	8.9999
AGA	chr11:51517754-51517970(-)$1	216	53	56	8.9999
AGA	chr15:37927431-37927649(-)$1	218	10	13	8.9999
AGA	chr2:29029073-29029292(+)$1	219	21	24	8.9999
AGA	chr15:81603652-81603869(+)$1	217	113	116	8.9999
AGA	chr19:7109064-7109283(-)$1	219	14	17	8.9999
AGA	chr17:10409128-10409338(-)$1	210	145	148	8.9999
AGA	chr7:82822189-82822406(+)$1	217	1	4	8.9999
AGA	chr11:11867462-11867679(-)$1	217	6	9	8.9999
AGA	chr4:141261838-141262059(-)$1	221	40	43	8.9999
AGA	chr8:114525601-114525819(-)$1	218	44	47	8.9999
AGA	chr6:29383488-29383708(+)$1	220	31	34	8.9999
AGA	chrM:13143-13365(-)$1	222	1	4	8.9999
AGA	chr6:122268535-122268758(-)$1	223	100	103	8.9999
AGA	chr17:15092050-15092261(-)$1	211	0	3	8.9999
aga	chr7:109616853-109617066(+)$1	213	38	41	8.9999
AGA	chr9:58100967-58101180(+)$1	213	75	78	8.9999
aga	chrM:2719-2939(+)$1	220	6	9	8.9999
AGA	chr2:34630031-34630247(+)$1	216	54	57	8.9999
AGA	chr9:103226635-103226848(+)$1	213	32	35	8.9999
AGA	chr18:35022961-35023171(+)$1	210	30	33	8.9999
AGA	chr11:8351359-8351576(-)$1	217	90	93	8.9999
AGA	chr12:105934479-105934693(-)$1	214	19	22	8.9999
AGA	chr6:71546696-71546914(-)$1	218	26	29	8.9999
AGA	chr7:133517448-133517663(-)$1	215	12	15	8.9999
AGA	chr17:35972820-35973040(-)$1	220	99	102	8.9999
AGA	chr19:4318997-4319213(-)$1	216	16	19	8.9999
AGA	chr11:86068855-86069076(-)$1	221	114	117	8.9999
AGA	chr11:82794895-82795114(-)$1	219	42	45	8.9999
AGA	chr7:109334379-109334599(-)$1	220	87	90	8.9999
AGA	chr4:44038234-44038453(+)$1	219	84	87	8.9999
AGA	chr2:120359515-120359731(-)$1	216	61	64	8.9999
AGA	chr4:117840951-117841170(-)$1	219	18	21	8.9999
AGA	chr11:96818829-96819039(-)$1	210	20	23	8.9999
AGA	chr5:108535655-108535870(+)$1	215	18	21	8.9999
AGA	chr19:36963223-36963437(+)$1	214	68	71	8.9999
AGA	chr4:129334972-129335185(-)$1	213	93	96	8.9999

#otherMatches

#Struct PSSM
qqq	chr7:125289540-125289752(-)$1	212	45	48	8.9999
[a[	chr11:3035377-3035597(-)$1	220	37	40	8.9999
JJJ	chr16:96282559-96282776(-)$1	217	28	31	8.9999
CCL	chr4:40208587-40208805(-)$1	218	15	18	8.9999
i[b	chr5:108244745-108244962(-)$1	217	14	17	8.9999
{BB	chr11:72260570-72260790(+)$1	220	116	119	8.9999
nnn	chr17:28018374-28018591(+)$1	217	27	30	8.9999
b[d	chr9:30972107-30972318(-)$1	211	29	32	8.9999
b""	chr12:21333852-21334063(-)$1	211	8	11	8.9999
DDD	chr10:70691745-70691956(-)$1	211	158	161	8.9999
bb[	chr2:130511419-130511641(-)$1	222	1	4	8.9999
[a!	chrX:108773314-108773532(-)$1	218	45	48	8.9999
fff	chr10:127789979-127790190(+)$1	211	54	57	8.9999
:::	chr7:118218318-118218537(-)$1	219	0	3	8.9999
ccc	chr17:15093675-15093885(-)$1	210	34	37	8.9999
$$$	chr17:88383880-88384094(+)$1	214	14	17	8.9999
eee	chr1:24619252-24619471(+)$1	219	9	12	8.9999
:ff	chr4:146163917-146164129(+)$1	212	53	56	8.9999
:::	chr11:17847742-17847954(-)$1	212	1	4	8.9999
:ff	chrX:72356042-72356264(-)$1	222	46	49	8.9999
:EE	chrM:6376-6595(+)$1	219	165	168	8.9999
JJJ	chr9:43960908-43961120(-)$1	212	32	35	8.9999
EEL	chr1:72362031-72362245(+)$1	214	6	9	8.9999
::b	chr17:35273057-35273278(+)$1	221	0	3	8.9999
:::	chr5:20503649-20503873(-)$1	224	1	4	8.9999
{AL	chr17:35646962-35647178(+)$1	216	18	21	8.9999
off	chr14:35552369-35552585(+)$1	216	61	64	8.9999
DDD	chr1:44230994-44231215(+)$1	221	62	65	8.9999
^^^	chr2:73746583-73746800(-)$1	217	34	37	8.9999
:::	chr19:5365807-5366025(-)$1	218	108	111	8.9999
GGG	chr16:57146127-57146345(+)$1	218	77	80	8.9999
DDD	chr3:96073686-96073903(+)$1	217	22	25	8.9999
ppp	chr5:102336495-102336705(-)$1	210	36	39	8.9999
ppp	chr11:83594615-83594839(+)$1	224	117	120	8.9999
cc]	chr6:82677292-82677504(-)$1	212	76	79	8.9999
cxx	chr8:89384812-89385022(+)$1	210	15	18	8.9999
ggg	chr15:37921761-37921977(-)$1	216	38	41	8.9999
EEE	chr13:55553007-55553226(+)$1	219	12	15	8.9999
GGG	chr17:75058528-75058743(+)$1	215	127	130	8.9999
cc[	chr11:57866066-57866285(+)$1	219	27	30	8.9999
:::	chr4:123148437-123148650(-)$1	213	18	21	8.9999
cee	chr4:126989402-126989614(-)$1	212	15	18	8.9999
mme	chrM:12868-13097(-)$1	229	32	35	8.9999
EEE	chr3:123045954-123046178(+)$1	224	18	21	8.9999
ggg	chr14:21350934-21351158(-)$1	224	113	116	8.9999
c!!	chr7:29800757-29800972(-)$1	215	76	79	8.9999
LLL	chr2:119773189-119773408(+)$1	219	29	32	8.9999
DDD	chr10:127548089-127548304(+)$1	215	19	22	8.9999
===	chr5:92485239-92485462(-)$1	223	41	44	8.9999
[cc	chr11:29111068-29111279(+)$1	211	49	52	8.9999
:::	chr6:126790539-126790758(-)$1	219	99	102	8.9999
hdd	chr5:21181753-21181964(-)$1	211	56	59	8.9999
ee]	chr4:147262679-147262894(-)$1	215	39	42	8.9999
a[e	chrX:148701308-148701524(+)$1	216	4	7	8.9999
ccc	chr9:36549288-36549506(-)$1	218	52	55	8.9999
:::	chr5:45894552-45894768(+)$1	216	64	67	8.9999
ccc	chrX:12714644-12714867(+)$1	223	87	90	8.9999
bb2	chr9:66220257-66220474(+)$1	217	77	80	8.9999
hhh	chr9:98497210-98497428(-)$1	218	4	7	8.9999
ybb	chr19:5901137-5901353(-)$1	216	173	176	8.9999
eee	chr16:62811743-62811957(-)$1	214	37	40	8.9999
a]b	chrX:12681729-12681959(+)$1	230	38	41	8.9999
HHH	chr3:88512732-88512943(+)$1	211	69	72	8.9999
FFF	chr11:51517754-51517970(-)$1	216	53	56	8.9999
:ee	chr15:37927431-37927649(-)$1	218	10	13	8.9999
GGG	chr2:29029073-29029292(+)$1	219	21	24	8.9999
ddd	chr15:81603652-81603869(+)$1	217	113	116	8.9999
yyy	chr19:7109064-7109283(-)$1	219	14	17	8.9999
bdd	chr17:10409128-10409338(-)$1	210	145	148	8.9999
:::	chr7:82822189-82822406(+)$1	217	1	4	8.9999
[bb	chr11:11867462-11867679(-)$1	217	6	9	8.9999
hh:	chr4:141261838-141262059(-)$1	221	40	43	8.9999
:::	chr8:114525601-114525819(-)$1	218	44	47	8.9999
GGG	chr6:29383488-29383708(+)$1	220	31	34	8.9999
:hh	chrM:13143-13365(-)$1	222	1	4	8.9999
eee	chr6:122268535-122268758(-)$1	223	100	103	8.9999
:CC	chr17:15092050-15092261(-)$1	211	0	3	8.9999
qqq	chr7:109616853-109617066(+)$1	213	38	41	8.9999
ccc	chr9:58100967-58101180(+)$1	213	75	78	8.9999
eee	chrM:2719-2939(+)$1	220	6	9	8.9999
b""	chr2:34630031-34630247(+)$1	216	54	57	8.9999
CCC	chr9:103226635-103226848(+)$1	213	32	35	8.9999
===	chr18:35022961-35023171(+)$1	210	30	33	8.9999
fff	chr11:8351359-8351576(-)$1	217	90	93	8.9999
&&&	chr12:105934479-105934693(-)$1	214	19	22	8.9999
err	chr6:71546696-71546914(-)$1	218	26	29	8.9999
:::	chr7:133517448-133517663(-)$1	215	12	15	8.9999
fff	chr17:35972820-35973040(-)$1	220	99	102	8.9999
qqc	chr19:4318997-4319213(-)$1	216	16	19	8.9999
]cc	chr11:86068855-86069076(-)$1	221	114	117	8.9999
]ff	chr11:82794895-82795114(-)$1	219	42	45	8.9999
c22	chr7:109334379-109334599(-)$1	220	87	90	8.9999
%%%	chr4:44038234-44038453(+)$1	219	84	87	8.9999
33e	chr2:120359515-120359731(-)$1	216	61	64	8.9999
KKD	chr4:117840951-117841170(-)$1	219	18	21	8.9999
CC:	chr11:96818829-96819039(-)$1	210	20	23	8.9999
CC:	chr5:108535655-108535870(+)$1	215	18	21	8.9999
dd2	chr19:36963223-36963437(+)$1	214	68	71	8.9999
ooo	chr4:129334972-129335185(-)$1	213	93	96	8.9999

#DB
...	chr7:125289540-125289752(-)$1	1	45	48	8.9999
.(.	chr11:3035377-3035597(-)$1	1	37	40	8.9999
(((	chr16:96282559-96282776(-)$1	1	28	31	8.9999
((.	chr4:40208587-40208805(-)$1	1	15	18	8.9999
(.(	chr5:108244745-108244962(-)$1	1	14	17	8.9999
.((	chr11:72260570-72260790(+)$1	1	116	119	8.9999
...	chr17:28018374-28018591(+)$1	1	27	30	8.9999
(.(	chr9:30972107-30972318(-)$1	1	29	32	8.9999
(..	chr12:21333852-21334063(-)$1	1	8	11	8.9999
)))	chr10:70691745-70691956(-)$1	1	158	161	8.9999
((.	chr2:130511419-130511641(-)$1	1	1	4	8.9999
.(.	chrX:108773314-108773532(-)$1	1	45	48	8.9999
(((	chr10:127789979-127790190(+)$1	1	54	57	8.9999
...	chr7:118218318-118218537(-)$1	1	0	3	8.9999
)))	chr17:15093675-15093885(-)$1	1	34	37	8.9999
...	chr17:88383880-88384094(+)$1	1	14	17	8.9999
(((	chr1:24619252-24619471(+)$1	1	9	12	8.9999
.((	chr4:146163917-146164129(+)$1	1	53	56	8.9999
...	chr11:17847742-17847954(-)$1	1	1	4	8.9999
.((	chrX:72356042-72356264(-)$1	1	46	49	8.9999
.))	chrM:6376-6595(+)$1	1	165	168	8.9999
(((	chr9:43960908-43961120(-)$1	1	32	35	8.9999
((.	chr1:72362031-72362245(+)$1	1	6	9	8.9999
..(	chr17:35273057-35273278(+)$1	1	0	3	8.9999
...	chr5:20503649-20503873(-)$1	1	1	4	8.9999
.(.	chr17:35646962-35647178(+)$1	1	18	21	8.9999
.))	chr14:35552369-35552585(+)$1	1	61	64	8.9999
(((	chr1:44230994-44231215(+)$1	1	62	65	8.9999
...	chr2:73746583-73746800(-)$1	1	34	37	8.9999
...	chr19:5365807-5366025(-)$1	1	108	111	8.9999
(((	chr16:57146127-57146345(+)$1	1	77	80	8.9999
(((	chr3:96073686-96073903(+)$1	1	22	25	8.9999
...	chr5:102336495-102336705(-)$1	1	36	39	8.9999
...	chr11:83594615-83594839(+)$1	1	117	120	8.9999
)).	chr6:82677292-82677504(-)$1	1	76	79	8.9999
(..	chr8:89384812-89385022(+)$1	1	15	18	8.9999
(((	chr15:37921761-37921977(-)$1	1	38	41	8.9999
(((	chr13:55553007-55553226(+)$1	1	12	15	8.9999
)))	chr17:75058528-75058743(+)$1	1	127	130	8.9999
((.	chr11:57866066-57866285(+)$1	1	27	30	8.9999
...	chr4:123148437-123148650(-)$1	1	18	21	8.9999
(((	chr4:126989402-126989614(-)$1	1	15	18	8.9999
..)	chrM:12868-13097(-)$1	1	32	35	8.9999
(((	chr3:123045954-123046178(+)$1	1	18	21	8.9999
)))	chr14:21350934-21351158(-)$1	1	113	116	8.9999
(..	chr7:29800757-29800972(-)$1	1	76	79	8.9999
...	chr2:119773189-119773408(+)$1	1	29	32	8.9999
(((	chr10:127548089-127548304(+)$1	1	19	22	8.9999
)))	chr5:92485239-92485462(-)$1	1	41	44	8.9999
.((	chr11:29111068-29111279(+)$1	1	49	52	8.9999
...	chr6:126790539-126790758(-)$1	1	99	102	8.9999
(((	chr5:21181753-21181964(-)$1	1	56	59	8.9999
)).	chr4:147262679-147262894(-)$1	1	39	42	8.9999
(.(	chrX:148701308-148701524(+)$1	1	4	7	8.9999
)))	chr9:36549288-36549506(-)$1	1	52	55	8.9999
...	chr5:45894552-45894768(+)$1	1	64	67	8.9999
)))	chrX:12714644-12714867(+)$1	1	87	90	8.9999
)).	chr9:66220257-66220474(+)$1	1	77	80	8.9999
(((	chr9:98497210-98497428(-)$1	1	4	7	8.9999
.))	chr19:5901137-5901353(-)$1	1	173	176	8.9999
(((	chr16:62811743-62811957(-)$1	1	37	40	8.9999
).)	chrX:12681729-12681959(+)$1	1	38	41	8.9999
(((	chr3:88512732-88512943(+)$1	1	69	72	8.9999
(((	chr11:51517754-51517970(-)$1	1	53	56	8.9999
.((	chr15:37927431-37927649(-)$1	1	10	13	8.9999
(((	chr2:29029073-29029292(+)$1	1	21	24	8.9999
)))	chr15:81603652-81603869(+)$1	1	113	116	8.9999
...	chr19:7109064-7109283(-)$1	1	14	17	8.9999
(((	chr17:10409128-10409338(-)$1	1	145	148	8.9999
...	chr7:82822189-82822406(+)$1	1	1	4	8.9999
.((	chr11:11867462-11867679(-)$1	1	6	9	8.9999
)).	chr4:141261838-141262059(-)$1	1	40	43	8.9999
...	chr8:114525601-114525819(-)$1	1	44	47	8.9999
(((	chr6:29383488-29383708(+)$1	1	31	34	8.9999
.((	chrM:13143-13365(-)$1	1	1	4	8.9999
)))	chr6:122268535-122268758(-)$1	1	100	103	8.9999
.((	chr17:15092050-15092261(-)$1	1	0	3	8.9999
...	chr7:109616853-109617066(+)$1	1	38	41	8.9999
(((	chr9:58100967-58101180(+)$1	1	75	78	8.9999
(((	chrM:2719-2939(+)$1	1	6	9	8.9999
(..	chr2:34630031-34630247(+)$1	1	54	57	8.9999
(((	chr9:103226635-103226848(+)$1	1	32	35	8.9999
(((	chr18:35022961-35023171(+)$1	1	30	33	8.9999
)))	chr11:8351359-8351576(-)$1	1	90	93	8.9999
...	chr12:105934479-105934693(-)$1	1	19	22	8.9999
(..	chr6:71546696-71546914(-)$1	1	26	29	8.9999
...	chr7:133517448-133517663(-)$1	1	12	15	8.9999
(((	chr17:35972820-35973040(-)$1	1	99	102	8.9999
..)	chr19:4318997-4319213(-)$1	1	16	19	8.9999
.))	chr11:86068855-86069076(-)$1	1	114	117	8.9999
.))	chr11:82794895-82795114(-)$1	1	42	45	8.9999
)..	chr7:109334379-109334599(-)$1	1	87	90	8.9999
...	chr4:44038234-44038453(+)$1	1	84	87	8.9999
..)	chr2:120359515-120359731(-)$1	1	61	64	8.9999
..(	chr4:117840951-117841170(-)$1	1	18	21	8.9999
((.	chr11:96818829-96819039(-)$1	1	20	23	8.9999
((.	chr5:108535655-108535870(+)$1	1	18	21	8.9999
)).	chr19:36963223-36963437(+)$1	1	68	71	8.9999
...	chr4:129334972-129335185(-)$1	1	93	96	8.9999

#PSSM
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	
A : 0.96	a : 0.03	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_UTR_m2_run2.nuc.txt

#NT
AGU	chr4:148554046-148554260(-)$1	214	207	210	8.9999
AGU	chr3:54520992-54521231(+)$1	239	23	26	8.9999
AGU	chr17:35974887-35975101(-)$1	214	89	92	8.9999
AGU	chr14:122933451-122933670(+)$1	219	120	123	8.9999
AGU	chr8:124405626-124405840(-)$1	214	38	41	8.9999
AGU	chr2:156003456-156003668(-)$1	212	2	5	8.9999
AGU	chr11:95821828-95822048(-)$1	220	23	26	8.9999
AGU	chr14:105515589-105515804(-)$1	215	199	202	8.9999
AGU	chr17:25080030-25080246(-)$1	216	82	85	8.9999
AGU	chr1:172144903-172145126(-)$1	223	136	139	8.9999
AGU	chr2:33307085-33307301(-)$1	216	24	27	8.9999
AGU	chr7:6141663-6141881(+)$1	218	24	27	8.9999
AGU	chr6:83758098-83758324(-)$1	226	55	58	8.9999
AGU	chr8:125408072-125408283(-)$1	211	108	111	8.9999
AGU	chr10:62274563-62274794(-)$1	231	41	44	8.9999
AGU	chr19:41635318-41635531(+)$1	213	61	64	8.9999
AGU	chr1:7163106-7163328(+)$1	222	19	22	8.9999
AGU	chr2:84528403-84528617(-)$1	214	5	8	8.9999
AGU	chr6:122664204-122664422(+)$1	218	14	17	8.9999
AGU	chr15:60653563-60653773(-)$1	210	18	21	8.9999
AGU	chr6:72561102-72561315(-)$1	213	158	161	8.9999
AGU	chr19:32898731-32898948(+)$1	217	20	23	8.9999
AGU	chr12:86474567-86474783(+)$1	216	129	132	8.9999
AGU	chr17:28536648-28536863(-)$1	215	123	126	8.9999
AGU	chr14:105508360-105508583(-)$1	223	48	51	8.9999
AGU	chr11:101332760-101332973(+)$1	213	150	153	8.9999
AGU	chr16:17046260-17046477(+)$1	217	14	17	8.9999
agu	chr4:53873523-53873744(+)$1	221	73	76	8.9999
AGU	chr13:93113129-93113339(-)$1	210	37	40	8.9999
AGU	chr4:123060486-123060697(-)$1	211	65	68	8.9999
AGU	chr9:118468030-118468244(+)$1	214	1	4	8.9999
AGU	chr1:52243017-52243227(-)$1	210	23	26	8.9999
AGU	chr2:155984045-155984259(-)$1	214	19	22	8.9999
AGU	chr12:82049177-82049399(+)$1	222	32	35	8.9999
AGU	chr6:124997649-124997869(+)$1	220	21	24	8.9999
AGU	chr1:84720810-84721034(-)$1	224	38	41	8.9999
AGU	chrX:148306235-148306449(+)$1	214	35	38	8.9999
AGU	chr13:54789207-54789417(-)$1	210	42	45	8.9999
AGU	chr2:25793373-25793592(-)$1	219	91	94	8.9999
AGU	chr7:109334379-109334599(-)$1	220	94	97	8.9999
AGU	chr10:115974271-115974488(-)$1	217	44	47	8.9999
agu	chr11:68936909-68937140(-)$1	231	106	109	8.9999
AGU	chr18:30490471-30490686(+)$1	215	9	12	8.9999
AGU	chr10:110731074-110731289(+)$1	215	53	56	8.9999
AGU	chr15:76498132-76498343(-)$1	211	42	45	8.9999
AGU	chr5:25195869-25196086(-)$1	217	2	5	8.9999
AGU	chr17:35379544-35379766(+)$1	222	102	105	8.9999
AGU	chr8:108292897-108293112(-)$1	215	40	43	8.9999
AGU	chr5:136120398-136120616(+)$1	218	12	15	8.9999
AGU	chr8:86247265-86247481(+)$1	216	71	74	8.9999
AGU	chr15:59484717-59484926(+)$1	209	88	91	8.9999
AGU	chr11:88692656-88692870(-)$1	214	136	139	8.9999
AGU	chr5:100465417-100465633(-)$1	216	28	31	8.9999
AGU	chr19:42022602-42022811(-)$1	209	11	14	8.9999
AGU	chr19:10284001-10284219(-)$1	218	84	87	8.9999
AGU	chr11:79846082-79846301(+)$1	219	106	109	8.9999
AGU	chr11:117715929-117716138(+)$1	209	67	70	8.9999
AGU	chr13:99018947-99019170(-)$1	223	46	49	8.9999
AGU	chr7:63217706-63217923(-)$1	217	80	83	8.9999
AGU	chr19:44380526-44380750(+)$1	224	72	75	8.9999
AGU	chr14:122419772-122419983(+)$1	211	1	4	8.9999
AGU	chr6:122268551-122268766(-)$1	215	2	5	8.9999
AGU	chr15:7145790-7146006(+)$1	216	27	30	8.9999
AGU	chr9:51895045-51895263(+)$1	218	80	83	8.9999
AGU	chr4:133088434-133088647(-)$1	213	14	17	8.9999
AGU	chr6:95077497-95077708(+)$1	211	13	16	8.9999
AGU	chr1:132589387-132589605(-)$1	218	26	29	8.9999
AGU	chr10:76523320-76523531(-)$1	211	117	120	8.9999
AGU	chr6:122687121-122687338(-)$1	217	40	43	8.9999
AGU	chr1:169156206-169156420(-)$1	214	111	114	8.9999
agu	chr7:152050619-152050840(+)$1	221	52	55	8.9999
AGU	chr13:69773808-69774022(+)$1	214	4	7	8.9999
AGU	chr17:66798834-66799050(+)$1	216	16	19	8.9999
AGU	chr4:34751377-34751589(-)$1	212	15	18	8.9999
AGU	chr11:86397518-86397731(-)$1	213	133	136	8.9999
AGU	chr8:131255995-131256205(+)$1	210	43	46	8.9999
AGU	chr11:74536978-74537201(-)$1	223	50	53	8.9999
AGU	chr9:65756795-65757013(+)$1	218	116	119	8.9999
AGU	chrX:98758779-98758996(+)$1	217	85	88	8.9999
AGU	chr11:33052458-33052676(-)$1	218	23	26	8.9999
agu	chr11:68936942-68937165(-)$1	223	131	134	8.9999
AGU	chr10:36714554-36714772(+)$1	218	13	16	8.9999
AGU	chr2:165898409-165898629(+)$1	220	23	26	8.9999
AGU	chr6:48351114-48351326(+)$1	212	6	9	8.9999
AGU	chr7:30562719-30562928(+)$1	209	110	113	8.9999
AGU	chr4:95689382-95689596(+)$1	214	29	32	8.9999
agu	chr11:4672287-4672498(-)$1	211	10	13	8.9999
AGU	chr14:99480482-99480694(-)$1	212	53	56	8.9999
AGU	chr2:94206640-94206856(-)$1	216	29	32	8.9999
AGU	chr11:88692565-88692783(-)$1	218	49	52	8.9999
AGU	chr13:67098421-67098640(+)$1	219	25	28	8.9999
AGU	chr18:34790758-34790973(-)$1	215	16	19	8.9999
AGU	chr9:56975563-56975781(+)$1	218	146	149	8.9999
AGU	chr1:163921432-163921650(+)$1	218	27	30	8.9999
AGU	chr7:19635365-19635583(+)$1	218	8	11	8.9999
AGU	chr11:86533708-86533925(-)$1	217	0	3	8.9999

#otherMatches

#Struct PSSM
c[b	chr6:51411284-51411507(-)$1	223	10	13	8.9999
JJ}	chr4:148554046-148554260(-)$1	214	207	210	8.9999
B{I	chr3:54520992-54521231(+)$1	239	23	26	8.9999
III	chr17:35974887-35975101(-)$1	214	89	92	8.9999
3==	chr14:122933451-122933670(+)$1	219	120	123	8.9999
ooo	chr8:124405626-124405840(-)$1	214	38	41	8.9999
BDD	chr2:156003456-156003668(-)$1	212	2	5	8.9999
%%g	chr11:95821828-95822048(-)$1	220	23	26	8.9999
fff	chr14:105515589-105515804(-)$1	215	199	202	8.9999
bb[	chr17:25080030-25080246(-)$1	216	82	85	8.9999
$ee	chr1:172144903-172145126(-)$1	223	136	139	8.9999
OOJ	chr2:33307085-33307301(-)$1	216	24	27	8.9999
eee	chr7:6141663-6141881(+)$1	218	24	27	8.9999
uff	chr6:83758098-83758324(-)$1	226	55	58	8.9999
DD}	chr8:125408072-125408283(-)$1	211	108	111	8.9999
qqq	chr10:62274563-62274794(-)$1	231	41	44	8.9999
xxx	chr19:41635318-41635531(+)$1	213	61	64	8.9999
qqq	chr1:7163106-7163328(+)$1	222	19	22	8.9999
FFF	chr2:84528403-84528617(-)$1	214	5	8	8.9999
:::	chr6:122664204-122664422(+)$1	218	14	17	8.9999
dqq	chr15:60653563-60653773(-)$1	210	18	21	8.9999
::c	chr6:72561102-72561315(-)$1	213	158	161	8.9999
:DD	chr19:32898731-32898948(+)$1	217	20	23	8.9999
HHH	chr12:86474567-86474783(+)$1	216	129	132	8.9999
ooo	chr17:28536648-28536863(-)$1	215	123	126	8.9999
ccc	chr14:105508360-105508583(-)$1	223	48	51	8.9999
eee	chr11:101332760-101332973(+)$1	213	150	153	8.9999
:::	chr16:17046260-17046477(+)$1	217	14	17	8.9999
dd4	chr4:53873523-53873744(+)$1	221	73	76	8.9999
ddd	chr13:93113129-93113339(-)$1	210	37	40	8.9999
dd:	chr4:123060486-123060697(-)$1	211	65	68	8.9999
:DD	chr9:118468030-118468244(+)$1	214	1	4	8.9999
ddd	chr1:52243017-52243227(-)$1	210	23	26	8.9999
"cc	chr2:155984045-155984259(-)$1	214	19	22	8.9999
hhh	chr12:82049177-82049399(+)$1	222	32	35	8.9999
EE:	chr6:124997649-124997869(+)$1	220	21	24	8.9999
fbb	chr1:84720810-84721034(-)$1	224	38	41	8.9999
ddd	chrX:148306235-148306449(+)$1	214	35	38	8.9999
:ee	chr13:54789207-54789417(-)$1	210	42	45	8.9999
EEE	chr2:25793373-25793592(-)$1	219	91	94	8.9999
ebb	chr7:109334379-109334599(-)$1	220	94	97	8.9999
DD{	chr10:115974271-115974488(-)$1	217	44	47	8.9999
eee	chr11:68936909-68937140(-)$1	231	106	109	8.9999
:::	chr18:30490471-30490686(+)$1	215	9	12	8.9999
b:e	chr10:110731074-110731289(+)$1	215	53	56	8.9999
eee	chr15:76498132-76498343(-)$1	211	42	45	8.9999
:::	chr5:25195869-25196086(-)$1	217	2	5	8.9999
FFK	chr17:35379544-35379766(+)$1	222	102	105	8.9999
nnn	chr8:108292897-108293112(-)$1	215	40	43	8.9999
DDD	chr5:136120398-136120616(+)$1	218	12	15	8.9999
ddd	chr8:86247265-86247481(+)$1	216	71	74	8.9999
ndd	chr15:59484717-59484926(+)$1	209	88	91	8.9999
ddd	chr11:88692656-88692870(-)$1	214	136	139	8.9999
eee	chr5:100465417-100465633(-)$1	216	28	31	8.9999
iii	chr19:42022602-42022811(-)$1	209	11	14	8.9999
hhh	chr19:10284001-10284219(-)$1	218	84	87	8.9999
d[b	chr11:79846082-79846301(+)$1	219	106	109	8.9999
ddd	chr11:117715929-117716138(+)$1	209	67	70	8.9999
ggg	chr13:99018947-99019170(-)$1	223	46	49	8.9999
ff"	chr7:63217706-63217923(-)$1	217	80	83	8.9999
ddd	chr19:44380526-44380750(+)$1	224	72	75	8.9999
fff	chr14:122419772-122419983(+)$1	211	1	4	8.9999
DDD	chr6:122268551-122268766(-)$1	215	2	5	8.9999
eee	chr15:7145790-7146006(+)$1	216	27	30	8.9999
YBB	chr9:51895045-51895263(+)$1	218	80	83	8.9999
ggg	chr4:133088434-133088647(-)$1	213	14	17	8.9999
eee	chr6:95077497-95077708(+)$1	211	13	16	8.9999
cdd	chr1:132589387-132589605(-)$1	218	26	29	8.9999
^^^	chr10:76523320-76523531(-)$1	211	117	120	8.9999
ccc	chr6:122687121-122687338(-)$1	217	40	43	8.9999
fff	chr1:169156206-169156420(-)$1	214	111	114	8.9999
ddd	chr7:152050619-152050840(+)$1	221	52	55	8.9999
CCC	chr13:69773808-69774022(+)$1	214	4	7	8.9999
enn	chr17:66798834-66799050(+)$1	216	16	19	8.9999
hhh	chr4:34751377-34751589(-)$1	212	15	18	8.9999
eee	chr11:86397518-86397731(-)$1	213	133	136	8.9999
fpp	chr8:131255995-131256205(+)$1	210	43	46	8.9999
nnn	chr11:74536978-74537201(-)$1	223	50	53	8.9999
BB}	chr9:65756795-65757013(+)$1	218	116	119	8.9999
eee	chrX:98758779-98758996(+)$1	217	85	88	8.9999
MMM	chr11:33052458-33052676(-)$1	218	23	26	8.9999
BB}	chr11:68936942-68937165(-)$1	223	131	134	8.9999
CCC	chr10:36714554-36714772(+)$1	218	13	16	8.9999
DDD	chr2:165898409-165898629(+)$1	220	23	26	8.9999
:ee	chr6:48351114-48351326(+)$1	212	6	9	8.9999
"""	chr7:30562719-30562928(+)$1	209	110	113	8.9999
rrr	chr4:95689382-95689596(+)$1	214	29	32	8.9999
ggg	chr11:4672287-4672498(-)$1	211	10	13	8.9999
ppp	chr14:99480482-99480694(-)$1	212	53	56	8.9999
hhh	chr2:94206640-94206856(-)$1	216	29	32	8.9999
ddd	chr11:88692565-88692783(-)$1	218	49	52	8.9999
fff	chr13:67098421-67098640(+)$1	219	25	28	8.9999
e[f	chr18:34790758-34790973(-)$1	215	16	19	8.9999
hhh	chr9:56975563-56975781(+)$1	218	146	149	8.9999
ddd	chr1:163921432-163921650(+)$1	218	27	30	8.9999
ncc	chr7:19635365-19635583(+)$1	218	8	11	8.9999
:::	chr11:86533708-86533925(-)$1	217	0	3	8.9999

#DB
(.(	chr6:51411284-51411507(-)$1	1	10	13	8.9999
)).	chr4:148554046-148554260(-)$1	1	207	210	8.9999
(.(	chr3:54520992-54521231(+)$1	1	23	26	8.9999
(((	chr17:35974887-35975101(-)$1	1	89	92	8.9999
.))	chr14:122933451-122933670(+)$1	1	120	123	8.9999
...	chr8:124405626-124405840(-)$1	1	38	41	8.9999
(((	chr2:156003456-156003668(-)$1	1	2	5	8.9999
..(	chr11:95821828-95822048(-)$1	1	23	26	8.9999
)))	chr14:105515589-105515804(-)$1	1	199	202	8.9999
((.	chr17:25080030-25080246(-)$1	1	82	85	8.9999
.((	chr1:172144903-172145126(-)$1	1	136	139	8.9999
..(	chr2:33307085-33307301(-)$1	1	24	27	8.9999
)))	chr7:6141663-6141881(+)$1	1	24	27	8.9999
.))	chr6:83758098-83758324(-)$1	1	55	58	8.9999
)).	chr8:125408072-125408283(-)$1	1	108	111	8.9999
...	chr10:62274563-62274794(-)$1	1	41	44	8.9999
...	chr19:41635318-41635531(+)$1	1	61	64	8.9999
...	chr1:7163106-7163328(+)$1	1	19	22	8.9999
(((	chr2:84528403-84528617(-)$1	1	5	8	8.9999
...	chr6:122664204-122664422(+)$1	1	14	17	8.9999
(..	chr15:60653563-60653773(-)$1	1	18	21	8.9999
..(	chr6:72561102-72561315(-)$1	1	158	161	8.9999
.((	chr19:32898731-32898948(+)$1	1	20	23	8.9999
(((	chr12:86474567-86474783(+)$1	1	129	132	8.9999
...	chr17:28536648-28536863(-)$1	1	123	126	8.9999
)))	chr14:105508360-105508583(-)$1	1	48	51	8.9999
)))	chr11:101332760-101332973(+)$1	1	150	153	8.9999
...	chr16:17046260-17046477(+)$1	1	14	17	8.9999
)).	chr4:53873523-53873744(+)$1	1	73	76	8.9999
)))	chr13:93113129-93113339(-)$1	1	37	40	8.9999
)).	chr4:123060486-123060697(-)$1	1	65	68	8.9999
.((	chr9:118468030-118468244(+)$1	1	1	4	8.9999
(((	chr1:52243017-52243227(-)$1	1	23	26	8.9999
.((	chr2:155984045-155984259(-)$1	1	19	22	8.9999
)))	chr12:82049177-82049399(+)$1	1	32	35	8.9999
((.	chr6:124997649-124997869(+)$1	1	21	24	8.9999
(((	chr1:84720810-84721034(-)$1	1	38	41	8.9999
(((	chrX:148306235-148306449(+)$1	1	35	38	8.9999
.((	chr13:54789207-54789417(-)$1	1	42	45	8.9999
(((	chr2:25793373-25793592(-)$1	1	91	94	8.9999
)((	chr7:109334379-109334599(-)$1	1	94	97	8.9999
((.	chr10:115974271-115974488(-)$1	1	44	47	8.9999
(((	chr11:68936909-68937140(-)$1	1	106	109	8.9999
...	chr18:30490471-30490686(+)$1	1	9	12	8.9999
).(	chr10:110731074-110731289(+)$1	1	53	56	8.9999
)))	chr15:76498132-76498343(-)$1	1	42	45	8.9999
...	chr5:25195869-25196086(-)$1	1	2	5	8.9999
((.	chr17:35379544-35379766(+)$1	1	102	105	8.9999
...	chr8:108292897-108293112(-)$1	1	40	43	8.9999
(((	chr5:136120398-136120616(+)$1	1	12	15	8.9999
)))	chr8:86247265-86247481(+)$1	1	71	74	8.9999
.))	chr15:59484717-59484926(+)$1	1	88	91	8.9999
(((	chr11:88692656-88692870(-)$1	1	136	139	8.9999
(((	chr5:100465417-100465633(-)$1	1	28	31	8.9999
(((	chr19:42022602-42022811(-)$1	1	11	14	8.9999
)))	chr19:10284001-10284219(-)$1	1	84	87	8.9999
(.(	chr11:79846082-79846301(+)$1	1	106	109	8.9999
)))	chr11:117715929-117716138(+)$1	1	67	70	8.9999
(((	chr13:99018947-99019170(-)$1	1	46	49	8.9999
((.	chr7:63217706-63217923(-)$1	1	80	83	8.9999
(((	chr19:44380526-44380750(+)$1	1	72	75	8.9999
(((	chr14:122419772-122419983(+)$1	1	1	4	8.9999
(((	chr6:122268551-122268766(-)$1	1	2	5	8.9999
(((	chr15:7145790-7146006(+)$1	1	27	30	8.9999
.))	chr9:51895045-51895263(+)$1	1	80	83	8.9999
(((	chr4:133088434-133088647(-)$1	1	14	17	8.9999
)))	chr6:95077497-95077708(+)$1	1	13	16	8.9999
(((	chr1:132589387-132589605(-)$1	1	26	29	8.9999
...	chr10:76523320-76523531(-)$1	1	117	120	8.9999
(((	chr6:122687121-122687338(-)$1	1	40	43	8.9999
)))	chr1:169156206-169156420(-)$1	1	111	114	8.9999
(((	chr7:152050619-152050840(+)$1	1	52	55	8.9999
(((	chr13:69773808-69774022(+)$1	1	4	7	8.9999
(..	chr17:66798834-66799050(+)$1	1	16	19	8.9999
(((	chr4:34751377-34751589(-)$1	1	15	18	8.9999
)))	chr11:86397518-86397731(-)$1	1	133	136	8.9999
(..	chr8:131255995-131256205(+)$1	1	43	46	8.9999
...	chr11:74536978-74537201(-)$1	1	50	53	8.9999
)).	chr9:65756795-65757013(+)$1	1	116	119	8.9999
)))	chrX:98758779-98758996(+)$1	1	85	88	8.9999
...	chr11:33052458-33052676(-)$1	1	23	26	8.9999
)).	chr11:68936942-68937165(-)$1	1	131	134	8.9999
(((	chr10:36714554-36714772(+)$1	1	13	16	8.9999
(((	chr2:165898409-165898629(+)$1	1	23	26	8.9999
.((	chr6:48351114-48351326(+)$1	1	6	9	8.9999
...	chr7:30562719-30562928(+)$1	1	110	113	8.9999
...	chr4:95689382-95689596(+)$1	1	29	32	8.9999
(((	chr11:4672287-4672498(-)$1	1	10	13	8.9999
...	chr14:99480482-99480694(-)$1	1	53	56	8.9999
)))	chr2:94206640-94206856(-)$1	1	29	32	8.9999
(((	chr11:88692565-88692783(-)$1	1	49	52	8.9999
)))	chr13:67098421-67098640(+)$1	1	25	28	8.9999
(.(	chr18:34790758-34790973(-)$1	1	16	19	8.9999
)))	chr9:56975563-56975781(+)$1	1	146	149	8.9999
)))	chr1:163921432-163921650(+)$1	1	27	30	8.9999
.))	chr7:19635365-19635583(+)$1	1	8	11	8.9999
...	chr11:86533708-86533925(-)$1	1	0	3	8.9999

#PSSM
A : 0.94	a : 0.05	
G : 0.94	g : 0.05	
U : 0.94	u : 0.05	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_CDS_m1_run2.nuc.txt

#NT
UUCU	chr17:23957068-23957282(+)$1	214	8	12	11.9999
UUCU	chr17:71974648-71974865(+)$1	217	35	39	11.9999
UUCU	chr4:128877968-128878178(+)$1	210	174	178	11.9999
UUCU	chr7:29100170-29100386(-)$1	216	107	111	11.9999
UUCU	chr10:77522336-77522553(+)$1	217	44	48	11.9999
UUCU	chrX:12714644-12714867(+)$1	223	43	47	11.9999
UUCU	chr2:37240692-37240907(-)$1	215	37	41	11.9999
UUCU	chr5:122080024-122080234(-)$1	210	100	104	11.9999
UUCU	chr15:37921761-37921977(-)$1	216	93	97	11.9999
UUCU	chr2:76549037-76549251(-)$1	214	20	24	11.9999
UUCU	chr12:4972632-4972846(+)$1	214	148	152	11.9999
UUCU	chr18:56902836-56903048(+)$1	212	157	161	11.9999
UUCU	chr17:88388686-88388900(+)$1	214	17	21	11.9999
UUCU	chr11:51517754-51517970(-)$1	216	18	22	11.9999
UUCU	chr7:106631046-106631264(-)$1	218	94	98	11.9999
UUCU	chr14:58212714-58212925(-)$1	211	74	78	11.9999
UUCU	chr1:135029783-135030003(+)$1	220	163	167	11.9999
UUCU	chr7:82822189-82822406(+)$1	217	79	83	11.9999
UUCU	chr5:67074855-67075082(+)$1	227	52	56	11.9999
UUCU	chr12:85499868-85500087(-)$1	219	72	76	11.9999
UUCU	chr5:108535802-108536013(+)$1	211	197	201	11.9999
UUCU	chr2:168582082-168582300(-)$1	218	110	114	11.9999
UUCU	chr11:75126472-75126688(-)$1	216	25	29	11.9999
UUCU	chr10:127548089-127548304(+)$1	215	23	27	11.9999
UUCU	chr3:36855519-36855732(+)$1	213	12	16	11.9999
UUCU	chr7:109334379-109334599(-)$1	220	130	134	11.9999
UUCU	chr5:66018241-66018468(-)$1	227	22	26	11.9999
UUCU	chr17:35972820-35973040(-)$1	220	9	13	11.9999
UUCU	chr1:89604585-89604799(+)$1	214	121	125	11.9999
UUCU	chr5:143136924-143137133(+)$1	209	19	23	11.9999
UUCU	chr11:84204963-84205182(+)$1	219	3	7	11.9999
UUCU	chr1:71654421-71654637(-)$1	216	37	41	11.9999
UUCU	chr11:97038498-97038711(-)$1	213	98	102	11.9999
UUCU	chr16:4701131-4701345(+)$1	214	23	27	11.9999
UUCU	chr13:63398120-63398337(+)$1	217	184	188	11.9999
UUCU	chr8:109206970-109207189(+)$1	219	122	126	11.9999
UUCU	chr3:87726261-87726485(+)$1	224	23	27	11.9999
UUCU	chr5:77735380-77735594(-)$1	214	29	33	11.9999
UUCU	chr1:180263058-180263289(-)$1	231	62	66	11.9999
UUCU	chr9:31206703-31206926(+)$1	223	48	52	11.9999
UUCU	chr17:35646962-35647178(+)$1	216	51	55	11.9999
UUCU	chr10:86156744-86156960(-)$1	216	39	43	11.9999
UUCU	chr14:31874630-31874845(+)$1	215	4	8	11.9999
UUCU	chrX:7444777-7444992(+)$1	215	33	37	11.9999
UUCU	chr2:126656906-126657130(-)$1	224	29	33	11.9999
UUCU	chr2:29745306-29745522(+)$1	216	109	113	11.9999
UUCU	chr14:59512522-59512746(+)$1	224	212	216	11.9999
UUCU	chr6:136752789-136753014(-)$1	225	81	85	11.9999
UUCU	chr9:78326726-78326944(-)$1	218	61	65	11.9999
UUCU	chr16:18255512-18255732(-)$1	220	25	29	11.9999
UUCU	chr10:12728349-12728567(+)$1	218	33	37	11.9999
UUCU	chr17:79325353-79325564(-)$1	211	93	97	11.9999
uucu	chr19:5365807-5366025(-)$1	218	26	30	11.9999
UUCU	chr15:12189229-12189447(+)$1	218	74	78	11.9999
UUCU	chr1:180261967-180262180(-)$1	213	77	81	11.9999
UUCU	chr7:51791266-51791479(-)$1	213	45	49	11.9999
UUCU	chr16:13792995-13793214(+)$1	219	106	110	11.9999
UUCU	chr1:173150140-173150360(-)$1	220	26	30	11.9999
UUCU	chr7:106628302-106628520(-)$1	218	197	201	11.9999
UUCU	chr2:29866447-29866671(+)$1	224	100	104	11.9999
UUCU	chr13:17984878-17985094(-)$1	216	92	96	11.9999
UUCU	chr2:94265699-94265915(-)$1	216	162	166	11.9999
UUCU	chr2:154710016-154710230(-)$1	214	7	11	11.9999
uucu	chr18:35022961-35023171(+)$1	210	172	176	11.9999
UUCU	chr4:98599491-98599727(+)$1	236	10	14	11.9999
UUCU	chr17:35290141-35290357(-)$1	216	9	13	11.9999
UUCU	chr15:12832311-12832525(+)$1	214	7	11	11.9999
UUCU	chr1:182517312-182517525(+)$1	213	60	64	11.9999
UUCU	chr2:130511419-130511641(-)$1	222	117	121	11.9999
UUCU	chr14:71087393-71087610(-)$1	217	2	6	11.9999
UUCU	chr1:180264012-180264223(-)$1	211	112	116	11.9999
UUCU	chr3:36938131-36938349(+)$1	218	27	31	11.9999
UUCU	chr3:32361403-32361617(+)$1	214	23	27	11.9999
UUCU	chr9:92493378-92493592(+)$1	214	36	40	11.9999

#otherMatches

#Struct PSSM
CCC:	chr16:91657862-91658073(+)$1	211	120	124	11.9999
hhhh	chr17:23957068-23957282(+)$1	214	8	12	11.9999
ff[d	chr17:71974648-71974865(+)$1	217	35	39	11.9999
DDD}	chr4:128877968-128878178(+)$1	210	174	178	11.9999
dddd	chr7:29100170-29100386(-)$1	216	107	111	11.9999
====	chr10:77522336-77522553(+)$1	217	44	48	11.9999
IIII	chrX:12714644-12714867(+)$1	223	43	47	11.9999
^^^^	chr2:37240692-37240907(-)$1	215	37	41	11.9999
niii	chr5:122080024-122080234(-)$1	210	100	104	11.9999
:::c	chr15:37921761-37921977(-)$1	216	93	97	11.9999
EE::	chr2:76549037-76549251(-)$1	214	20	24	11.9999
leee	chr12:4972632-4972846(+)$1	214	148	152	11.9999
FFFF	chr18:56902836-56903048(+)$1	212	157	161	11.9999
ddd!	chr17:88388686-88388900(+)$1	214	17	21	11.9999
gggg	chr11:51517754-51517970(-)$1	216	18	22	11.9999
eee!	chr7:106631046-106631264(-)$1	218	94	98	11.9999
::::	chr14:58212714-58212925(-)$1	211	74	78	11.9999
]ddd	chr1:135029783-135030003(+)$1	220	163	167	11.9999
fddd	chr7:82822189-82822406(+)$1	217	79	83	11.9999
ccc:	chr5:67074855-67075082(+)$1	227	52	56	11.9999
^^^^	chr12:85499868-85500087(-)$1	219	72	76	11.9999
::dd	chr5:108535802-108536013(+)$1	211	197	201	11.9999
fffu	chr2:168582082-168582300(-)$1	218	110	114	11.9999
dDDD	chr11:75126472-75126688(-)$1	216	25	29	11.9999
{FFF	chr10:127548089-127548304(+)$1	215	23	27	11.9999
FF::	chr3:36855519-36855732(+)$1	213	12	16	11.9999
iiii	chr7:109334379-109334599(-)$1	220	130	134	11.9999
gggm	chr5:66018241-66018468(-)$1	227	22	26	11.9999
HHHH	chr17:35972820-35973040(-)$1	220	9	13	11.9999
b22c	chr1:89604585-89604799(+)$1	214	121	125	11.9999
WWWW	chr5:143136924-143137133(+)$1	209	19	23	11.9999
FFFF	chr11:84204963-84205182(+)$1	219	3	7	11.9999
::::	chr1:71654421-71654637(-)$1	216	37	41	11.9999
::::	chr11:97038498-97038711(-)$1	213	98	102	11.9999
::::	chr16:4701131-4701345(+)$1	214	23	27	11.9999
hhhh	chr13:63398120-63398337(+)$1	217	184	188	11.9999
ffff	chr8:109206970-109207189(+)$1	219	122	126	11.9999
:FFF	chr3:87726261-87726485(+)$1	224	23	27	11.9999
:::D	chr5:77735380-77735594(-)$1	214	29	33	11.9999
:hhh	chr1:180263058-180263289(-)$1	231	62	66	11.9999
:ddd	chr9:31206703-31206926(+)$1	223	48	52	11.9999
eee[	chr17:35646962-35647178(+)$1	216	51	55	11.9999
EEEO	chr10:86156744-86156960(-)$1	216	39	43	11.9999
ee[c	chr14:31874630-31874845(+)$1	215	4	8	11.9999
dddb	chrX:7444777-7444992(+)$1	215	33	37	11.9999
gg]d	chr2:126656906-126657130(-)$1	224	29	33	11.9999
:ddd	chr2:29745306-29745522(+)$1	216	109	113	11.9999
}FFF	chr14:59512522-59512746(+)$1	224	212	216	11.9999
:::d	chr6:136752789-136753014(-)$1	225	81	85	11.9999
]ccc	chr9:78326726-78326944(-)$1	218	61	65	11.9999
ccee	chr16:18255512-18255732(-)$1	220	25	29	11.9999
b]ee	chr10:12728349-12728567(+)$1	218	33	37	11.9999
ddmm	chr17:79325353-79325564(-)$1	211	93	97	11.9999
^^^^	chr19:5365807-5366025(-)$1	218	26	30	11.9999
::::	chr15:12189229-12189447(+)$1	218	74	78	11.9999
cc33	chr1:180261967-180262180(-)$1	213	77	81	11.9999
gggg	chr7:51791266-51791479(-)$1	213	45	49	11.9999
333d	chr16:13792995-13793214(+)$1	219	106	110	11.9999
c###	chr1:173150140-173150360(-)$1	220	26	30	11.9999
====	chr7:106628302-106628520(-)$1	218	197	201	11.9999
%%%%	chr2:29866447-29866671(+)$1	224	100	104	11.9999
ssss	chr13:17984878-17985094(-)$1	216	92	96	11.9999
[bb!	chr2:94265699-94265915(-)$1	216	162	166	11.9999
HHHH	chr2:154710016-154710230(-)$1	214	7	11	11.9999
@@@@	chr18:35022961-35023171(+)$1	210	172	176	11.9999
ddd:	chr4:98599491-98599727(+)$1	236	10	14	11.9999
KKA{	chr17:35290141-35290357(-)$1	216	9	13	11.9999
iii!	chr15:12832311-12832525(+)$1	214	7	11	11.9999
GGG:	chr1:182517312-182517525(+)$1	213	60	64	11.9999
fff[	chr2:130511419-130511641(-)$1	222	117	121	11.9999
:::D	chr14:71087393-71087610(-)$1	217	2	6	11.9999
hhhh	chr1:180264012-180264223(-)$1	211	112	116	11.9999
ffff	chr3:36938131-36938349(+)$1	218	27	31	11.9999
$$$$	chr3:32361403-32361617(+)$1	214	23	27	11.9999
hhhh	chr9:92493378-92493592(+)$1	214	36	40	11.9999

#DB
(((.	chr16:91657862-91658073(+)$1	1	120	124	11.9999
((((	chr17:23957068-23957282(+)$1	1	8	12	11.9999
((.(	chr17:71974648-71974865(+)$1	1	35	39	11.9999
))).	chr4:128877968-128878178(+)$1	1	174	178	11.9999
((((	chr7:29100170-29100386(-)$1	1	107	111	11.9999
))))	chr10:77522336-77522553(+)$1	1	44	48	11.9999
((((	chrX:12714644-12714867(+)$1	1	43	47	11.9999
....	chr2:37240692-37240907(-)$1	1	37	41	11.9999
.)))	chr5:122080024-122080234(-)$1	1	100	104	11.9999
...(	chr15:37921761-37921977(-)$1	1	93	97	11.9999
((..	chr2:76549037-76549251(-)$1	1	20	24	11.9999
.)))	chr12:4972632-4972846(+)$1	1	148	152	11.9999
))))	chr18:56902836-56903048(+)$1	1	157	161	11.9999
(((.	chr17:88388686-88388900(+)$1	1	17	21	11.9999
((((	chr11:51517754-51517970(-)$1	1	18	22	11.9999
(((.	chr7:106631046-106631264(-)$1	1	94	98	11.9999
....	chr14:58212714-58212925(-)$1	1	74	78	11.9999
.)))	chr1:135029783-135030003(+)$1	1	163	167	11.9999
)(((	chr7:82822189-82822406(+)$1	1	79	83	11.9999
))).	chr5:67074855-67075082(+)$1	1	52	56	11.9999
....	chr12:85499868-85500087(-)$1	1	72	76	11.9999
..((	chr5:108535802-108536013(+)$1	1	197	201	11.9999
(((.	chr2:168582082-168582300(-)$1	1	110	114	11.9999
)(((	chr11:75126472-75126688(-)$1	1	25	29	11.9999
.(((	chr10:127548089-127548304(+)$1	1	23	27	11.9999
((..	chr3:36855519-36855732(+)$1	1	12	16	11.9999
))))	chr7:109334379-109334599(-)$1	1	130	134	11.9999
(((.	chr5:66018241-66018468(-)$1	1	22	26	11.9999
((((	chr17:35972820-35973040(-)$1	1	9	13	11.9999
)..)	chr1:89604585-89604799(+)$1	1	121	125	11.9999
....	chr5:143136924-143137133(+)$1	1	19	23	11.9999
((((	chr11:84204963-84205182(+)$1	1	3	7	11.9999
....	chr1:71654421-71654637(-)$1	1	37	41	11.9999
....	chr11:97038498-97038711(-)$1	1	98	102	11.9999
....	chr16:4701131-4701345(+)$1	1	23	27	11.9999
))))	chr13:63398120-63398337(+)$1	1	184	188	11.9999
((((	chr8:109206970-109207189(+)$1	1	122	126	11.9999
.(((	chr3:87726261-87726485(+)$1	1	23	27	11.9999
...(	chr5:77735380-77735594(-)$1	1	29	33	11.9999
.(((	chr1:180263058-180263289(-)$1	1	62	66	11.9999
.(((	chr9:31206703-31206926(+)$1	1	48	52	11.9999
(((.	chr17:35646962-35647178(+)$1	1	51	55	11.9999
(((.	chr10:86156744-86156960(-)$1	1	39	43	11.9999
((.(	chr14:31874630-31874845(+)$1	1	4	8	11.9999
))))	chrX:7444777-7444992(+)$1	1	33	37	11.9999
)).)	chr2:126656906-126657130(-)$1	1	29	33	11.9999
.(((	chr2:29745306-29745522(+)$1	1	109	113	11.9999
.)))	chr14:59512522-59512746(+)$1	1	212	216	11.9999
...(	chr6:136752789-136753014(-)$1	1	81	85	11.9999
.)))	chr9:78326726-78326944(-)$1	1	61	65	11.9999
((((	chr16:18255512-18255732(-)$1	1	25	29	11.9999
).))	chr10:12728349-12728567(+)$1	1	33	37	11.9999
((..	chr17:79325353-79325564(-)$1	1	93	97	11.9999
....	chr19:5365807-5366025(-)$1	1	26	30	11.9999
....	chr15:12189229-12189447(+)$1	1	74	78	11.9999
))..	chr1:180261967-180262180(-)$1	1	77	81	11.9999
))))	chr7:51791266-51791479(-)$1	1	45	49	11.9999
...)	chr16:13792995-13793214(+)$1	1	106	110	11.9999
(...	chr1:173150140-173150360(-)$1	1	26	30	11.9999
))))	chr7:106628302-106628520(-)$1	1	197	201	11.9999
....	chr2:29866447-29866671(+)$1	1	100	104	11.9999
....	chr13:17984878-17985094(-)$1	1	92	96	11.9999
.((.	chr2:94265699-94265915(-)$1	1	162	166	11.9999
((((	chr2:154710016-154710230(-)$1	1	7	11	11.9999
....	chr18:35022961-35023171(+)$1	1	172	176	11.9999
))).	chr4:98599491-98599727(+)$1	1	10	14	11.9999
..(.	chr17:35290141-35290357(-)$1	1	9	13	11.9999
(((.	chr15:12832311-12832525(+)$1	1	7	11	11.9999
(((.	chr1:182517312-182517525(+)$1	1	60	64	11.9999
(((.	chr2:130511419-130511641(-)$1	1	117	121	11.9999
...(	chr14:71087393-71087610(-)$1	1	2	6	11.9999
((((	chr1:180264012-180264223(-)$1	1	112	116	11.9999
))))	chr3:36938131-36938349(+)$1	1	27	31	11.9999
....	chr3:32361403-32361617(+)$1	1	23	27	11.9999
((((	chr9:92493378-92493592(+)$1	1	36	40	11.9999

#PSSM
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	

#score	899.9999999999998
#seq	75
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_UTR_m3_run1.nuc.txt

#NT
AGUG	chr11:76800656-76800872(+)$1	216	110	114	11.9999
AGUG	chr7:108971176-108971396(-)$1	220	107	111	11.9999
AGUG	chr8:109895892-109896110(+)$1	218	51	55	11.9999
AGUG	chr1:55043956-55044174(-)$1	218	75	79	11.9999
AGUG	chr16:20692582-20692802(+)$1	220	9	13	11.9999
AGUG	chr3:32234582-32234793(-)$1	211	91	95	11.9999
AGUG	chr13:9121269-9121479(+)$1	210	112	116	11.9999
AGUG	chr4:133560688-133560919(-)$1	231	30	34	11.9999
AGUG	chr7:109334379-109334599(-)$1	220	94	98	11.9999
AGUG	chr19:42024022-42024232(-)$1	210	121	125	11.9999
AGUG	chr11:53232147-53232363(+)$1	216	95	99	11.9999
AGUG	chr6:87793733-87793945(-)$1	212	18	22	11.9999
AGUG	chr15:59480251-59480475(+)$1	224	109	113	11.9999
AGUG	chr6:122268535-122268758(-)$1	223	176	180	11.9999
AGUG	chrX:39629201-39629413(+)$1	212	12	16	11.9999
AGUG	chr11:60718155-60718368(-)$1	213	127	131	11.9999
AGUG	chr18:61747432-61747650(+)$1	218	208	212	11.9999
AGUG	chr11:79846243-79846457(+)$1	214	17	21	11.9999
AGUG	chr14:35157175-35157390(+)$1	215	27	31	11.9999
AGUG	chr16:18255512-18255732(-)$1	220	138	142	11.9999
AGUG	chr18:44581856-44582100(+)$1	244	80	84	11.9999
AGUG	chr19:15979991-15980207(-)$1	216	48	52	11.9999
AGUG	chr1:63360312-63360529(-)$1	217	127	131	11.9999
AGUG	chr7:138043986-138044199(+)$1	213	143	147	11.9999
AGUG	chr3:95465020-95465245(+)$1	225	110	114	11.9999
AGUG	chr14:21854613-21854831(-)$1	218	99	103	11.9999
AGUG	chr9:82760159-82760374(-)$1	215	58	62	11.9999
AGUG	chr1:133829958-133830176(+)$1	218	149	153	11.9999
AGUG	chr3:86590505-86590717(-)$1	212	94	98	11.9999
AGUG	chr4:69910014-69910226(-)$1	212	73	77	11.9999
AGUG	chr17:14042160-14042384(+)$1	224	72	76	11.9999
AGUG	chr9:120864409-120864628(+)$1	219	66	70	11.9999
AGUG	chr1:33834498-33834722(-)$1	224	219	223	11.9999
AGUG	chr10:77526262-77526478(+)$1	216	104	108	11.9999
AGUG	chr16:31095240-31095458(-)$1	218	28	32	11.9999
AGUG	chr18:34473464-34473686(+)$1	222	210	214	11.9999
agug	chr2:177296260-177296481(+)$1	221	89	93	11.9999
AGUG	chr13:55561925-55562141(+)$1	216	121	125	11.9999
AGUG	chr4:62050137-62050347(+)$1	210	21	25	11.9999
AGUG	chrX:70159290-70159503(-)$1	213	5	9	11.9999
AGUG	chr15:80760781-80760998(+)$1	217	28	32	11.9999
AGUG	chr5:111093465-111093681(-)$1	216	49	53	11.9999
AGUG	chr10:117261600-117261811(-)$1	211	87	91	11.9999
AGUG	chr6:146547112-146547328(+)$1	216	58	62	11.9999
AGUG	chr4:137773058-137773269(+)$1	211	70	74	11.9999
AGUG	chr4:132383056-132383277(-)$1	221	18	22	11.9999
AGUG	chr1:58462836-58463050(+)$1	214	152	156	11.9999
AGUG	chr9:4296524-4296734(-)$1	210	200	204	11.9999
AGUG	chr17:36029462-36029681(+)$1	219	32	36	11.9999
AGUG	chr5:149143436-149143658(-)$1	222	71	75	11.9999
AGUG	chr9:113885064-113885275(+)$1	211	72	76	11.9999
AGUG	chr15:103025033-103025247(-)$1	214	15	19	11.9999
AGUG	chr5:8397913-8398131(-)$1	218	84	88	11.9999
AGUG	chr1:133828813-133829029(+)$1	216	42	46	11.9999
AGUG	chr8:77617457-77617674(+)$1	217	101	105	11.9999
AGUG	chr5:92715608-92715827(-)$1	219	176	180	11.9999
AGUG	chr15:77591746-77591968(-)$1	222	207	211	11.9999
AGUG	chr11:86550593-86550812(-)$1	219	118	122	11.9999
AGUG	chr19:46729792-46730005(+)$1	213	81	85	11.9999
AGUG	chr13:47180144-47180362(-)$1	218	18	22	11.9999
AGUG	chr9:123371138-123371353(+)$1	215	182	186	11.9999
AGUG	chr7:30808704-30808928(+)$1	224	86	90	11.9999
AGUG	chr17:46820676-46820889(-)$1	213	174	178	11.9999
AGUG	chr2:29745306-29745522(+)$1	216	166	170	11.9999
AGUG	chr11:69730616-69730829(-)$1	213	4	8	11.9999
AGUG	chr8:11833162-11833374(+)$1	212	0	4	11.9999
AGUG	chr14:21532574-21532789(+)$1	215	22	26	11.9999
AGUG	chr17:23944953-23945171(+)$1	218	106	110	11.9999

#otherMatches

#Struct PSSM
!ddd	chr19:46150410-46150625(+)$1	215	87	91	11.9999
###=	chr11:76800656-76800872(+)$1	216	110	114	11.9999
:EEE	chr7:108971176-108971396(-)$1	220	107	111	11.9999
eeee	chr8:109895892-109896110(+)$1	218	51	55	11.9999
ee44	chr1:55043956-55044174(-)$1	218	75	79	11.9999
c[a[	chr16:20692582-20692802(+)$1	220	9	13	11.9999
mggg	chr3:32234582-32234793(-)$1	211	91	95	11.9999
cccE	chr13:9121269-9121479(+)$1	210	112	116	11.9999
oocc	chr4:133560688-133560919(-)$1	231	30	34	11.9999
ebb[	chr7:109334379-109334599(-)$1	220	94	98	11.9999
eeee	chr19:42024022-42024232(-)$1	210	121	125	11.9999
dddd	chr11:53232147-53232363(+)$1	216	95	99	11.9999
GGGG	chr6:87793733-87793945(-)$1	212	18	22	11.9999
:::C	chr15:59480251-59480475(+)$1	224	109	113	11.9999
dddc	chr6:122268535-122268758(-)$1	223	176	180	11.9999
eeee	chrX:39629201-39629413(+)$1	212	12	16	11.9999
hhbb	chr11:60718155-60718368(-)$1	213	127	131	11.9999
FFFF	chr18:61747432-61747650(+)$1	218	208	212	11.9999
iiil	chr11:79846243-79846457(+)$1	214	17	21	11.9999
mmmc	chr14:35157175-35157390(+)$1	215	27	31	11.9999
]eee	chr16:18255512-18255732(-)$1	220	138	142	11.9999
fff[	chr18:44581856-44582100(+)$1	244	80	84	11.9999
[ggg	chr19:15979991-15980207(-)$1	216	48	52	11.9999
FFFF	chr1:63360312-63360529(-)$1	217	127	131	11.9999
gggg	chr7:138043986-138044199(+)$1	213	143	147	11.9999
mmmm	chr3:95465020-95465245(+)$1	225	110	114	11.9999
IIII	chr14:21854613-21854831(-)$1	218	99	103	11.9999
DD{B	chr9:82760159-82760374(-)$1	215	58	62	11.9999
dddd	chr1:133829958-133830176(+)$1	218	149	153	11.9999
ff[a	chr3:86590505-86590717(-)$1	212	94	98	11.9999
#ccc	chr4:69910014-69910226(-)$1	212	73	77	11.9999
ssss	chr17:14042160-14042384(+)$1	224	72	76	11.9999
eedd	chr9:120864409-120864628(+)$1	219	66	70	11.9999
cc::	chr1:33834498-33834722(-)$1	224	219	223	11.9999
dddd	chr10:77526262-77526478(+)$1	216	104	108	11.9999
EEEE	chr16:31095240-31095458(-)$1	218	28	32	11.9999
EEEC	chr18:34473464-34473686(+)$1	222	210	214	11.9999
oooo	chr2:177296260-177296481(+)$1	221	89	93	11.9999
]ddd	chr13:55561925-55562141(+)$1	216	121	125	11.9999
HH{A	chr4:62050137-62050347(+)$1	210	21	25	11.9999
:A{C	chrX:70159290-70159503(-)$1	213	5	9	11.9999
f666	chr15:80760781-80760998(+)$1	217	28	32	11.9999
bb22	chr5:111093465-111093681(-)$1	216	49	53	11.9999
2ddd	chr10:117261600-117261811(-)$1	211	87	91	11.9999
ceee	chr6:146547112-146547328(+)$1	216	58	62	11.9999
mmmm	chr4:137773058-137773269(+)$1	211	70	74	11.9999
bb[h	chr4:132383056-132383277(-)$1	221	18	22	11.9999
ee22	chr1:58462836-58463050(+)$1	214	152	156	11.9999
C}EE	chr9:4296524-4296734(-)$1	210	200	204	11.9999
ggg!	chr17:36029462-36029681(+)$1	219	32	36	11.9999
:::d	chr5:149143436-149143658(-)$1	222	71	75	11.9999
eeee	chr9:113885064-113885275(+)$1	211	72	76	11.9999
mmme	chr15:103025033-103025247(-)$1	214	15	19	11.9999
FFFF	chr5:8397913-8398131(-)$1	218	84	88	11.9999
DDDK	chr1:133828813-133829029(+)$1	216	42	46	11.9999
]fff	chr8:77617457-77617674(+)$1	217	101	105	11.9999
!ddd	chr5:92715608-92715827(-)$1	219	176	180	11.9999
EEEE	chr15:77591746-77591968(-)$1	222	207	211	11.9999
JJdd	chr11:86550593-86550812(-)$1	219	118	122	11.9999
gggg	chr19:46729792-46730005(+)$1	213	81	85	11.9999
"ddd	chr13:47180144-47180362(-)$1	218	18	22	11.9999
%ccc	chr9:123371138-123371353(+)$1	215	182	186	11.9999
ccc]	chr7:30808704-30808928(+)$1	224	86	90	11.9999
=mmm	chr17:46820676-46820889(-)$1	213	174	178	11.9999
deee	chr2:29745306-29745522(+)$1	216	166	170	11.9999
DD{B	chr11:69730616-69730829(-)$1	213	4	8	11.9999
::::	chr8:11833162-11833374(+)$1	212	0	4	11.9999
###d	chr14:21532574-21532789(+)$1	215	22	26	11.9999
::::	chr17:23944953-23945171(+)$1	218	106	110	11.9999

#DB
.(((	chr19:46150410-46150625(+)$1	1	87	91	11.9999
...(	chr11:76800656-76800872(+)$1	1	110	114	11.9999
.)))	chr7:108971176-108971396(-)$1	1	107	111	11.9999
))))	chr8:109895892-109896110(+)$1	1	51	55	11.9999
))..	chr1:55043956-55044174(-)$1	1	75	79	11.9999
(.(.	chr16:20692582-20692802(+)$1	1	9	13	11.9999
.)))	chr3:32234582-32234793(-)$1	1	91	95	11.9999
))))	chr13:9121269-9121479(+)$1	1	112	116	11.9999
..))	chr4:133560688-133560919(-)$1	1	30	34	11.9999
)((.	chr7:109334379-109334599(-)$1	1	94	98	11.9999
))))	chr19:42024022-42024232(-)$1	1	121	125	11.9999
((((	chr11:53232147-53232363(+)$1	1	95	99	11.9999
((((	chr6:87793733-87793945(-)$1	1	18	22	11.9999
...)	chr15:59480251-59480475(+)$1	1	109	113	11.9999
((((	chr6:122268535-122268758(-)$1	1	176	180	11.9999
((((	chrX:39629201-39629413(+)$1	1	12	16	11.9999
))((	chr11:60718155-60718368(-)$1	1	127	131	11.9999
))))	chr18:61747432-61747650(+)$1	1	208	212	11.9999
(((.	chr11:79846243-79846457(+)$1	1	17	21	11.9999
...)	chr14:35157175-35157390(+)$1	1	27	31	11.9999
.)))	chr16:18255512-18255732(-)$1	1	138	142	11.9999
(((.	chr18:44581856-44582100(+)$1	1	80	84	11.9999
.(((	chr19:15979991-15980207(-)$1	1	48	52	11.9999
))))	chr1:63360312-63360529(-)$1	1	127	131	11.9999
((((	chr7:138043986-138044199(+)$1	1	143	147	11.9999
....	chr3:95465020-95465245(+)$1	1	110	114	11.9999
))))	chr14:21854613-21854831(-)$1	1	99	103	11.9999
((.(	chr9:82760159-82760374(-)$1	1	58	62	11.9999
((((	chr1:133829958-133830176(+)$1	1	149	153	11.9999
((.(	chr3:86590505-86590717(-)$1	1	94	98	11.9999
.(((	chr4:69910014-69910226(-)$1	1	73	77	11.9999
....	chr17:14042160-14042384(+)$1	1	72	76	11.9999
((((	chr9:120864409-120864628(+)$1	1	66	70	11.9999
))..	chr1:33834498-33834722(-)$1	1	219	223	11.9999
))))	chr10:77526262-77526478(+)$1	1	104	108	11.9999
((((	chr16:31095240-31095458(-)$1	1	28	32	11.9999
))))	chr18:34473464-34473686(+)$1	1	210	214	11.9999
....	chr2:177296260-177296481(+)$1	1	89	93	11.9999
.)))	chr13:55561925-55562141(+)$1	1	121	125	11.9999
((.(	chr4:62050137-62050347(+)$1	1	21	25	11.9999
.(.(	chrX:70159290-70159503(-)$1	1	5	9	11.9999
)...	chr15:80760781-80760998(+)$1	1	28	32	11.9999
))..	chr5:111093465-111093681(-)$1	1	49	53	11.9999
.)))	chr10:117261600-117261811(-)$1	1	87	91	11.9999
))))	chr6:146547112-146547328(+)$1	1	58	62	11.9999
....	chr4:137773058-137773269(+)$1	1	70	74	11.9999
((.(	chr4:132383056-132383277(-)$1	1	18	22	11.9999
))..	chr1:58462836-58463050(+)$1	1	152	156	11.9999
).))	chr9:4296524-4296734(-)$1	1	200	204	11.9999
(((.	chr17:36029462-36029681(+)$1	1	32	36	11.9999
...(	chr5:149143436-149143658(-)$1	1	71	75	11.9999
))))	chr9:113885064-113885275(+)$1	1	72	76	11.9999
...)	chr15:103025033-103025247(-)$1	1	15	19	11.9999
))))	chr5:8397913-8398131(-)$1	1	84	88	11.9999
(((.	chr1:133828813-133829029(+)$1	1	42	46	11.9999
.)))	chr8:77617457-77617674(+)$1	1	101	105	11.9999
.(((	chr5:92715608-92715827(-)$1	1	176	180	11.9999
))))	chr15:77591746-77591968(-)$1	1	207	211	11.9999
))((	chr11:86550593-86550812(-)$1	1	118	122	11.9999
((((	chr19:46729792-46730005(+)$1	1	81	85	11.9999
.(((	chr13:47180144-47180362(-)$1	1	18	22	11.9999
.(((	chr9:123371138-123371353(+)$1	1	182	186	11.9999
))).	chr7:30808704-30808928(+)$1	1	86	90	11.9999
(...	chr17:46820676-46820889(-)$1	1	174	178	11.9999
)(((	chr2:29745306-29745522(+)$1	1	166	170	11.9999
((.(	chr11:69730616-69730829(-)$1	1	4	8	11.9999
....	chr8:11833162-11833374(+)$1	1	0	4	11.9999
...(	chr14:21532574-21532789(+)$1	1	22	26	11.9999
....	chr17:23944953-23945171(+)$1	1	106	110	11.9999

#PSSM
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	827.9999999999995
#seq	69
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_UTR_m2_run1.nuc.txt

#NT
UCU	chr1:153668815-153669040(+)$1	225	73	76	8.9999
UCU	chr15:102866076-102866304(+)$1	228	135	138	8.9999
UCU	chr5:48695479-48695710(+)$1	231	6	9	8.9999
UCU	chr13:112505381-112505604(+)$1	223	41	44	8.9999
UCU	chr11:106643943-106644171(-)$1	228	64	67	8.9999
UCU	chr4:117549614-117549844(-)$1	230	5	8	8.9999
UCU	chr13:21283954-21284215(+)$1	261	35	38	8.9999
UCU	chrX:91497651-91497900(+)$1	249	36	39	8.9999
UCU	chr15:44259642-44259866(+)$1	224	7	10	8.9999
UCU	chr11:51935428-51935657(+)$1	229	203	206	8.9999
UCU	chr9:101004379-101004597(+)$1	218	122	125	8.9999
UCU	chr7:20011035-20011265(-)$1	230	61	64	8.9999
UCU	chr19:45231163-45231387(+)$1	224	38	41	8.9999
UCU	chr7:134486687-134486921(-)$1	234	8	11	8.9999
UCU	chr1:192995259-192995487(-)$1	228	86	89	8.9999
UCU	chr16:20672816-20673042(+)$1	226	49	52	8.9999
UCU	chr6:148791333-148791556(-)$1	223	29	32	8.9999
UCU	chr2:90855106-90855334(+)$1	228	57	60	8.9999
UCU	chr6:51419583-51419807(-)$1	224	13	16	8.9999
UCU	chr3:9283476-9283698(+)$1	222	33	36	8.9999
UCU	chr1:129699938-129700197(+)$1	259	44	47	8.9999
UCU	chr11:87864441-87864708(+)$1	267	10	13	8.9999
UCU	chr9:88348819-88349078(-)$1	259	65	68	8.9999
UCU	chr2:3381541-3381771(-)$1	230	60	63	8.9999
UCU	chr10:20059430-20059693(+)$1	263	33	36	8.9999
UCU	chrX:71473169-71473396(-)$1	227	94	97	8.9999
UCU	chr15:102867007-102867230(+)$1	223	45	48	8.9999
UCU	chr11:84801972-84802198(-)$1	226	127	130	8.9999
UCU	chr7:134487129-134487351(-)$1	222	171	174	8.9999
UCU	chrX:160861108-160861329(+)$1	221	19	22	8.9999
UCU	chr17:23955493-23955720(+)$1	227	17	20	8.9999
UCU	chr8:46136560-46136804(+)$1	244	104	107	8.9999
UCU	chr11:53074974-53075201(-)$1	227	46	49	8.9999
UCU	chr7:17500625-17500884(-)$1	259	159	162	8.9999
UCU	chr12:60173823-60174063(+)$1	240	4	7	8.9999
UCU	chr1:154686253-154686480(-)$1	227	6	9	8.9999
UCU	chr15:75877523-75877747(-)$1	224	35	38	8.9999
UCU	chr2:155923912-155924165(-)$1	253	3	6	8.9999
UCU	chr11:86315782-86316012(-)$1	230	63	66	8.9999
UCU	chr6:4708692-4708922(+)$1	230	9	12	8.9999
UCU	chr2:26777405-26777637(-)$1	232	23	26	8.9999
UCU	chr8:124175746-124175975(-)$1	229	73	76	8.9999
UCU	chr9:7206910-7207138(+)$1	228	30	33	8.9999
UCU	chr5:23008794-23009024(+)$1	230	101	104	8.9999
UCU	chrX:71280718-71280958(-)$1	240	131	134	8.9999
UCU	chr11:116711834-116712057(-)$1	223	199	202	8.9999
UCU	chr9:62643739-62643978(-)$1	239	51	54	8.9999
UCu	chr11:86315511-86315735(-)$1	224	43	46	8.9999
UCU	chr11:100577058-100577289(-)$1	231	51	54	8.9999
UCU	chr8:109410787-109411017(-)$1	230	0	3	8.9999
UCU	chr11:86547177-86547399(-)$1	222	21	24	8.9999
UCU	chr11:69212905-69213138(-)$1	233	42	45	8.9999
UCU	chr1:36125396-36125650(+)$1	254	228	231	8.9999
UCU	chr14:61985990-61986219(-)$1	229	34	37	8.9999
UCU	chr17:34251249-34251484(-)$1	235	23	26	8.9999
UCU	chr11:120825083-120825312(-)$1	229	6	9	8.9999
UCU	chr18:35063706-35063960(-)$1	254	41	44	8.9999
UCU	chr11:79845353-79845581(+)$1	228	95	98	8.9999
UCU	chr2:72775049-72775275(-)$1	226	15	18	8.9999
UCU	chr6:51411879-51412131(-)$1	252	3	6	8.9999
UCU	chr14:21320358-21320597(-)$1	239	15	18	8.9999
UCU	chr2:34678276-34678538(-)$1	262	10	13	8.9999
UCU	chr13:112216351-112216577(-)$1	226	59	62	8.9999
UCU	chr11:86170972-86171203(-)$1	231	94	97	8.9999
UCU	chr12:8716123-8716349(+)$1	226	42	45	8.9999
UCU	chr1:133827752-133827972(+)$1	220	16	19	8.9999
UCU	chr19:21355832-21356078(+)$1	246	9	12	8.9999
UCU	chr7:134168917-134169144(-)$1	227	94	97	8.9999
UCU	chr16:11220808-11221028(-)$1	220	19	22	8.9999
UCU	chr12:110053859-110054101(+)$1	242	24	27	8.9999
UCU	chr5:23471006-23471231(-)$1	225	33	36	8.9999
UCU	chr5:130717172-130717409(+)$1	237	14	17	8.9999
UCU	chr7:97594529-97594753(+)$1	224	9	12	8.9999
UCU	chr3:60432709-60432931(+)$1	222	41	44	8.9999
UCU	chr17:32498382-32498605(-)$1	223	14	17	8.9999
UCU	chr4:135421463-135421704(+)$1	241	31	34	8.9999
UCU	chr7:29383056-29383278(-)$1	222	180	183	8.9999
UCU	chr2:153056305-153056533(-)$1	228	53	56	8.9999
UCU	chr3:110052646-110052882(-)$1	236	57	60	8.9999
UCU	chr3:29879602-29879836(-)$1	234	76	79	8.9999
UCU	chr15:102864960-102865188(+)$1	228	220	223	8.9999
UCU	chr11:106644954-106645242(-)$1	288	11	14	8.9999
UCU	chr5:34345489-34345720(+)$1	231	60	63	8.9999
UCU	chr18:34930678-34930912(+)$1	234	122	125	8.9999
UCU	chr17:34255906-34256128(-)$1	222	43	46	8.9999
UCU	chr10:31328869-31329106(-)$1	237	164	167	8.9999
UCU	chr5:115547599-115547823(+)$1	224	18	21	8.9999
UCU	chr2:121836309-121836554(+)$1	245	163	166	8.9999
UCU	chr5:100464605-100464847(-)$1	242	49	52	8.9999
UCU	chr12:102278608-102278831(-)$1	223	43	46	8.9999
UCU	chr17:46684577-46684799(-)$1	222	41	44	8.9999
UCU	chr9:108461700-108461928(+)$1	228	182	185	8.9999
UCU	chr19:14523800-14524028(-)$1	228	0	3	8.9999
UCU	chr11:118899001-118899226(-)$1	225	15	18	8.9999
UCU	chr11:80209227-80209456(+)$1	229	45	48	8.9999
UCU	chr11:87862902-87863162(+)$1	260	71	74	8.9999
UCU	chr9:110378898-110379138(-)$1	240	83	86	8.9999
UCU	chr9:62658992-62659253(-)$1	261	55	58	8.9999

#otherMatches

#Struct PSSM
FFF	chr5:123794587-123794816(+)$1	229	8	11	8.9999
ggg	chr1:153668815-153669040(+)$1	225	73	76	8.9999
ggg	chr15:102866076-102866304(+)$1	228	135	138	8.9999
FFF	chr5:48695479-48695710(+)$1	231	6	9	8.9999
:ee	chr13:112505381-112505604(+)$1	223	41	44	8.9999
qqq	chr11:106643943-106644171(-)$1	228	64	67	8.9999
===	chr4:117549614-117549844(-)$1	230	5	8	8.9999
eee	chr13:21283954-21284215(+)$1	261	35	38	8.9999
e]c	chrX:91497651-91497900(+)$1	249	36	39	8.9999
[bb	chr15:44259642-44259866(+)$1	224	7	10	8.9999
FFF	chr11:51935428-51935657(+)$1	229	203	206	8.9999
ggg	chr9:101004379-101004597(+)$1	218	122	125	8.9999
DDD	chr7:20011035-20011265(-)$1	230	61	64	8.9999
HHH	chr19:45231163-45231387(+)$1	224	38	41	8.9999
CCC	chr7:134486687-134486921(-)$1	234	8	11	8.9999
eee	chr1:192995259-192995487(-)$1	228	86	89	8.9999
LLL	chr16:20672816-20673042(+)$1	226	49	52	8.9999
eee	chr6:148791333-148791556(-)$1	223	29	32	8.9999
fff	chr2:90855106-90855334(+)$1	228	57	60	8.9999
d!!	chr6:51419583-51419807(-)$1	224	13	16	8.9999
ooo	chr3:9283476-9283698(+)$1	222	33	36	8.9999
{BB	chr1:129699938-129700197(+)$1	259	44	47	8.9999
::H	chr11:87864441-87864708(+)$1	267	10	13	8.9999
eel	chr9:88348819-88349078(-)$1	259	65	68	8.9999
dd[	chr2:3381541-3381771(-)$1	230	60	63	8.9999
eee	chr10:20059430-20059693(+)$1	263	33	36	8.9999
5ee	chrX:71473169-71473396(-)$1	227	94	97	8.9999
eee	chr15:102867007-102867230(+)$1	223	45	48	8.9999
FFF	chr11:84801972-84802198(-)$1	226	127	130	8.9999
ZDD	chr7:134487129-134487351(-)$1	222	171	174	8.9999
ddd	chrX:160861108-160861329(+)$1	221	19	22	8.9999
:CC	chr17:23955493-23955720(+)$1	227	17	20	8.9999
:::	chr8:46136560-46136804(+)$1	244	104	107	8.9999
:::	chr11:53074974-53075201(-)$1	227	46	49	8.9999
ddd	chr7:17500625-17500884(-)$1	259	159	162	8.9999
fff	chr12:60173823-60174063(+)$1	240	4	7	8.9999
ccc	chr1:154686253-154686480(-)$1	227	6	9	8.9999
mmm	chr15:75877523-75877747(-)$1	224	35	38	8.9999
ddd	chr2:155923912-155924165(-)$1	253	3	6	8.9999
===	chr11:86315782-86316012(-)$1	230	63	66	8.9999
MME	chr6:4708692-4708922(+)$1	230	9	12	8.9999
GGG	chr2:26777405-26777637(-)$1	232	23	26	8.9999
sss	chr8:124175746-124175975(-)$1	229	73	76	8.9999
%%%	chr9:7206910-7207138(+)$1	228	30	33	8.9999
g:c	chr5:23008794-23009024(+)$1	230	101	104	8.9999
fff	chrX:71280718-71280958(-)$1	240	131	134	8.9999
:::	chr11:116711834-116712057(-)$1	223	199	202	8.9999
hhh	chr9:62643739-62643978(-)$1	239	51	54	8.9999
gg$	chr11:86315511-86315735(-)$1	224	43	46	8.9999
fff	chr11:100577058-100577289(-)$1	231	51	54	8.9999
:::	chr8:109410787-109411017(-)$1	230	0	3	8.9999
:::	chr11:86547177-86547399(-)$1	222	21	24	8.9999
nnn	chr11:69212905-69213138(-)$1	233	42	45	8.9999
GGG	chr1:36125396-36125650(+)$1	254	228	231	8.9999
EEE	chr14:61985990-61986219(-)$1	229	34	37	8.9999
!dd	chr17:34251249-34251484(-)$1	235	23	26	8.9999
%%%	chr11:120825083-120825312(-)$1	229	6	9	8.9999
bb[	chr18:35063706-35063960(-)$1	254	41	44	8.9999
fff	chr11:79845353-79845581(+)$1	228	95	98	8.9999
DDD	chr2:72775049-72775275(-)$1	226	15	18	8.9999
:::	chr6:51411879-51412131(-)$1	252	3	6	8.9999
KEE	chr14:21320358-21320597(-)$1	239	15	18	8.9999
mme	chr2:34678276-34678538(-)$1	262	10	13	8.9999
:::	chr13:112216351-112216577(-)$1	226	59	62	8.9999
c""	chr11:86170972-86171203(-)$1	231	94	97	8.9999
fff	chr12:8716123-8716349(+)$1	226	42	45	8.9999
:::	chr1:133827752-133827972(+)$1	220	16	19	8.9999
"""	chr19:21355832-21356078(+)$1	246	9	12	8.9999
]dd	chr7:134168917-134169144(-)$1	227	94	97	8.9999
:::	chr16:11220808-11221028(-)$1	220	19	22	8.9999
ggg	chr12:110053859-110054101(+)$1	242	24	27	8.9999
$$e	chr5:23471006-23471231(-)$1	225	33	36	8.9999
:CC	chr5:130717172-130717409(+)$1	237	14	17	8.9999
::h	chr7:97594529-97594753(+)$1	224	9	12	8.9999
ddd	chr3:60432709-60432931(+)$1	222	41	44	8.9999
""d	chr17:32498382-32498605(-)$1	223	14	17	8.9999
ggg	chr4:135421463-135421704(+)$1	241	31	34	8.9999
mcc	chr7:29383056-29383278(-)$1	222	180	183	8.9999
ooo	chr2:153056305-153056533(-)$1	228	53	56	8.9999
ddd	chr3:110052646-110052882(-)$1	236	57	60	8.9999
eee	chr3:29879602-29879836(-)$1	234	76	79	8.9999
:::	chr15:102864960-102865188(+)$1	228	220	223	8.9999
FFF	chr11:106644954-106645242(-)$1	288	11	14	8.9999
vvv	chr5:34345489-34345720(+)$1	231	60	63	8.9999
ffl	chr18:34930678-34930912(+)$1	234	122	125	8.9999
:::	chr17:34255906-34256128(-)$1	222	43	46	8.9999
eee	chr10:31328869-31329106(-)$1	237	164	167	8.9999
ttt	chr5:115547599-115547823(+)$1	224	18	21	8.9999
ddd	chr2:121836309-121836554(+)$1	245	163	166	8.9999
fff	chr5:100464605-100464847(-)$1	242	49	52	8.9999
eee	chr12:102278608-102278831(-)$1	223	43	46	8.9999
HHH	chr17:46684577-46684799(-)$1	222	41	44	8.9999
888	chr9:108461700-108461928(+)$1	228	182	185	8.9999
FFF	chr19:14523800-14524028(-)$1	228	0	3	8.9999
:::	chr11:118899001-118899226(-)$1	225	15	18	8.9999
fff	chr11:80209227-80209456(+)$1	229	45	48	8.9999
$bb	chr11:87862902-87863162(+)$1	260	71	74	8.9999
===	chr9:110378898-110379138(-)$1	240	83	86	8.9999
RRR	chr9:62658992-62659253(-)$1	261	55	58	8.9999

#DB
(((	chr5:123794587-123794816(+)$1	1	8	11	8.9999
)))	chr1:153668815-153669040(+)$1	1	73	76	8.9999
(((	chr15:102866076-102866304(+)$1	1	135	138	8.9999
(((	chr5:48695479-48695710(+)$1	1	6	9	8.9999
.((	chr13:112505381-112505604(+)$1	1	41	44	8.9999
...	chr11:106643943-106644171(-)$1	1	64	67	8.9999
(((	chr4:117549614-117549844(-)$1	1	5	8	8.9999
(((	chr13:21283954-21284215(+)$1	1	35	38	8.9999
).)	chrX:91497651-91497900(+)$1	1	36	39	8.9999
.((	chr15:44259642-44259866(+)$1	1	7	10	8.9999
)))	chr11:51935428-51935657(+)$1	1	203	206	8.9999
)))	chr9:101004379-101004597(+)$1	1	122	125	8.9999
(((	chr7:20011035-20011265(-)$1	1	61	64	8.9999
(((	chr19:45231163-45231387(+)$1	1	38	41	8.9999
(((	chr7:134486687-134486921(-)$1	1	8	11	8.9999
)))	chr1:192995259-192995487(-)$1	1	86	89	8.9999
...	chr16:20672816-20673042(+)$1	1	49	52	8.9999
(((	chr6:148791333-148791556(-)$1	1	29	32	8.9999
(((	chr2:90855106-90855334(+)$1	1	57	60	8.9999
(..	chr6:51419583-51419807(-)$1	1	13	16	8.9999
...	chr3:9283476-9283698(+)$1	1	33	36	8.9999
.((	chr1:129699938-129700197(+)$1	1	44	47	8.9999
..(	chr11:87864441-87864708(+)$1	1	10	13	8.9999
((.	chr9:88348819-88349078(-)$1	1	65	68	8.9999
((.	chr2:3381541-3381771(-)$1	1	60	63	8.9999
)))	chr10:20059430-20059693(+)$1	1	33	36	8.9999
.))	chrX:71473169-71473396(-)$1	1	94	97	8.9999
(((	chr15:102867007-102867230(+)$1	1	45	48	8.9999
)))	chr11:84801972-84802198(-)$1	1	127	130	8.9999
.))	chr7:134487129-134487351(-)$1	1	171	174	8.9999
(((	chrX:160861108-160861329(+)$1	1	19	22	8.9999
.((	chr17:23955493-23955720(+)$1	1	17	20	8.9999
...	chr8:46136560-46136804(+)$1	1	104	107	8.9999
...	chr11:53074974-53075201(-)$1	1	46	49	8.9999
(((	chr7:17500625-17500884(-)$1	1	159	162	8.9999
(((	chr12:60173823-60174063(+)$1	1	4	7	8.9999
(((	chr1:154686253-154686480(-)$1	1	6	9	8.9999
...	chr15:75877523-75877747(-)$1	1	35	38	8.9999
(((	chr2:155923912-155924165(-)$1	1	3	6	8.9999
(((	chr11:86315782-86316012(-)$1	1	63	66	8.9999
..(	chr6:4708692-4708922(+)$1	1	9	12	8.9999
(((	chr2:26777405-26777637(-)$1	1	23	26	8.9999
...	chr8:124175746-124175975(-)$1	1	73	76	8.9999
...	chr9:7206910-7207138(+)$1	1	30	33	8.9999
).(	chr5:23008794-23009024(+)$1	1	101	104	8.9999
)))	chrX:71280718-71280958(-)$1	1	131	134	8.9999
...	chr11:116711834-116712057(-)$1	1	199	202	8.9999
(((	chr9:62643739-62643978(-)$1	1	51	54	8.9999
((.	chr11:86315511-86315735(-)$1	1	43	46	8.9999
(((	chr11:100577058-100577289(-)$1	1	51	54	8.9999
...	chr8:109410787-109411017(-)$1	1	0	3	8.9999
...	chr11:86547177-86547399(-)$1	1	21	24	8.9999
...	chr11:69212905-69213138(-)$1	1	42	45	8.9999
)))	chr1:36125396-36125650(+)$1	1	228	231	8.9999
(((	chr14:61985990-61986219(-)$1	1	34	37	8.9999
.((	chr17:34251249-34251484(-)$1	1	23	26	8.9999
...	chr11:120825083-120825312(-)$1	1	6	9	8.9999
((.	chr18:35063706-35063960(-)$1	1	41	44	8.9999
(((	chr11:79845353-79845581(+)$1	1	95	98	8.9999
(((	chr2:72775049-72775275(-)$1	1	15	18	8.9999
...	chr6:51411879-51412131(-)$1	1	3	6	8.9999
.((	chr14:21320358-21320597(-)$1	1	15	18	8.9999
..)	chr2:34678276-34678538(-)$1	1	10	13	8.9999
...	chr13:112216351-112216577(-)$1	1	59	62	8.9999
(..	chr11:86170972-86171203(-)$1	1	94	97	8.9999
)))	chr12:8716123-8716349(+)$1	1	42	45	8.9999
...	chr1:133827752-133827972(+)$1	1	16	19	8.9999
...	chr19:21355832-21356078(+)$1	1	9	12	8.9999
.))	chr7:134168917-134169144(-)$1	1	94	97	8.9999
...	chr16:11220808-11221028(-)$1	1	19	22	8.9999
(((	chr12:110053859-110054101(+)$1	1	24	27	8.9999
..(	chr5:23471006-23471231(-)$1	1	33	36	8.9999
.((	chr5:130717172-130717409(+)$1	1	14	17	8.9999
..(	chr7:97594529-97594753(+)$1	1	9	12	8.9999
)))	chr3:60432709-60432931(+)$1	1	41	44	8.9999
..(	chr17:32498382-32498605(-)$1	1	14	17	8.9999
)))	chr4:135421463-135421704(+)$1	1	31	34	8.9999
.))	chr7:29383056-29383278(-)$1	1	180	183	8.9999
...	chr2:153056305-153056533(-)$1	1	53	56	8.9999
)))	chr3:110052646-110052882(-)$1	1	57	60	8.9999
)))	chr3:29879602-29879836(-)$1	1	76	79	8.9999
...	chr15:102864960-102865188(+)$1	1	220	223	8.9999
(((	chr11:106644954-106645242(-)$1	1	11	14	8.9999
...	chr5:34345489-34345720(+)$1	1	60	63	8.9999
((.	chr18:34930678-34930912(+)$1	1	122	125	8.9999
...	chr17:34255906-34256128(-)$1	1	43	46	8.9999
(((	chr10:31328869-31329106(-)$1	1	164	167	8.9999
...	chr5:115547599-115547823(+)$1	1	18	21	8.9999
(((	chr2:121836309-121836554(+)$1	1	163	166	8.9999
)))	chr5:100464605-100464847(-)$1	1	49	52	8.9999
(((	chr12:102278608-102278831(-)$1	1	43	46	8.9999
(((	chr17:46684577-46684799(-)$1	1	41	44	8.9999
...	chr9:108461700-108461928(+)$1	1	182	185	8.9999
(((	chr19:14523800-14524028(-)$1	1	0	3	8.9999
...	chr11:118899001-118899226(-)$1	1	15	18	8.9999
(((	chr11:80209227-80209456(+)$1	1	45	48	8.9999
.((	chr11:87862902-87863162(+)$1	1	71	74	8.9999
)))	chr9:110378898-110379138(-)$1	1	83	86	8.9999
...	chr9:62658992-62659253(-)$1	1	55	58	8.9999

#PSSM
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
U : 0.97	u : 0.02	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_CDS_m2_run1.nuc.txt

#NT
CAGA	chr3:102854124-102854362(+)$1	238	135	139	8.9999
UAGA	chrX:103014611-103014834(-)$1	223	191	195	7.5882
GAGA	chr10:20059458-20059718(+)$1	260	66	70	8.0588
GAGA	chr13:41104719-41104944(+)$1	225	119	123	8.0588
CAGA	chr11:51932631-51932865(+)$1	234	38	42	8.9999
AAGA	chr18:53369915-53370153(+)$1	238	161	165	8.3529
AAGA	chr15:12047904-12048148(+)$1	244	107	111	8.3529
AAGA	chrX:154031571-154031802(-)$1	231	71	75	8.3529
GAGA	chr14:57538044-57538270(+)$1	226	153	157	8.0588
CAGA	chr2:75696894-75697135(+)$1	241	3	7	8.9999
AAGA	chr3:16105112-16105347(+)$1	235	103	107	8.3529
CAGA	chr7:66531667-66531889(+)$1	222	102	106	8.9999
AAGA	chr4:108184619-108184861(+)$1	242	139	143	8.3529
GAGA	chr10:20042780-20043029(+)$1	249	29	33	8.0588
GAGA	chr11:100324398-100324628(-)$1	230	82	86	8.0588
CAGA	chr13:17843550-17843777(-)$1	227	30	34	8.9999
UAGA	chr7:118221864-118222091(-)$1	227	21	25	7.5882
GAGA	chr10:62480738-62481001(-)$1	263	35	39	8.0588
CAGA	chr14:52800600-52800835(-)$1	235	62	66	8.9999
GAGA	chr19:12844810-12845039(-)$1	229	4	8	8.0588
AAGA	chr18:39583946-39584167(-)$1	221	39	43	8.3529
UAGA	chr11:50196073-50196300(+)$1	227	1	5	7.5882
AAGA	chr17:34251242-34251484(-)$1	242	13	17	8.3529
AAGA	chr10:61898105-61898331(-)$1	226	81	85	8.3529
UAGA	chr6:56729121-56729345(-)$1	224	76	80	7.5882
CAGA	chr10:7393365-7393590(+)$1	225	14	18	8.9999
CAGA	chr18:42461338-42461565(+)$1	227	35	39	8.9999
AAGA	chr9:82826468-82826694(-)$1	226	64	68	8.3529
CAGA	chr3:57454542-57454763(-)$1	221	182	186	8.9999
AAGA	chr7:125355936-125356177(-)$1	241	21	25	8.3529
AAGA	chr15:38421313-38421535(-)$1	222	100	104	8.3529
AAGA	chr7:17148753-17148982(-)$1	229	40	44	8.3529
CAGA	chr9:36595691-36595917(-)$1	226	166	170	8.9999
CAGA	chr3:57649121-57649351(-)$1	230	14	18	8.9999
AAGA	chr12:70401156-70401378(+)$1	222	120	124	8.3529
CAGA	chr10:86161305-86161526(-)$1	221	2	6	8.9999
AAGA	chr4:11129309-11129534(+)$1	225	125	129	8.3529
CAGA	chr9:110453188-110453416(+)$1	228	4	8	8.9999
CAGA	chr11:79349056-79349287(+)$1	231	61	65	8.9999
GAGA	chr9:54730045-54730287(+)$1	242	13	17	8.0588
CAGA	chr9:56961255-56961482(+)$1	227	2	6	8.9999
GAGA	chr16:91656527-91656766(+)$1	239	22	26	8.0588
UAGA	chr13:55775225-55775450(+)$1	225	73	77	7.5882
CAGA	chr8:98299154-98299382(-)$1	228	93	97	8.9999
CAGA	chr11:74502377-74502632(-)$1	255	13	17	8.9999
CAGA	chr11:4982270-4982508(-)$1	238	51	55	8.9999
CAGA	chr17:35381320-35381561(+)$1	241	122	126	8.9999
CAGA	chr10:128253735-128253959(+)$1	224	65	69	8.9999
GAGA	chr9:56952326-56952564(+)$1	238	181	185	8.0588
AAGA	chrX:109746295-109746522(+)$1	227	3	7	8.3529
GAGA	chr16:84860529-84860757(+)$1	228	132	136	8.0588
AAGA	chr4:128756051-128756280(+)$1	229	219	223	8.3529
AAGA	chr2:14994708-14994932(+)$1	224	196	200	8.3529
GAGA	chrX:91518129-91518373(+)$1	244	25	29	8.0588
GAGA	chr12:105940589-105940810(-)$1	221	94	98	8.0588
AAGA	chr9:102790696-102790923(+)$1	227	60	64	8.3529
AAGA	chr10:115986005-115986233(-)$1	228	147	151	8.3529
CAGA	chr14:17262821-17263048(+)$1	227	22	26	8.9999
CAGA	chr6:142342482-142342707(+)$1	225	15	19	8.9999
GAGA	chr6:113065482-113065709(+)$1	227	97	101	8.0588
CAGA	chr11:104374204-104374432(-)$1	228	27	31	8.9999
UAGA	chr11:77506136-77506367(+)$1	231	83	87	7.5882
UAGA	chr16:91022830-91023055(-)$1	225	105	109	7.5882
GAGA	chr4:125857458-125857683(-)$1	225	80	84	8.0588
UAGA	chr2:37330743-37330975(+)$1	232	73	77	7.5882
UAGA	chr18:12295399-12295624(+)$1	225	216	220	7.5882
CAGA	chr12:35791297-35791518(+)$1	221	133	137	8.9999
GAGA	chr6:136752492-136752717(-)$1	225	6	10	8.0588
AAGA	chr2:48745784-48746014(+)$1	230	107	111	8.3529
CAGA	chr1:44822816-44823041(+)$1	225	85	89	8.9999
CAGA	chr10:39947289-39947524(-)$1	235	54	58	8.9999
CAGA	chr6:31399395-31399620(+)$1	225	97	101	8.9999
AAGA	chr11:80205264-80205499(+)$1	235	10	14	8.3529
CAGA	chr3:94690261-94690482(-)$1	221	112	116	8.9999
gaga	chr8:98258100-98258326(-)$1	226	50	54	8.0588
CAGA	chr1:36406153-36406380(-)$1	227	121	125	8.9999
CAGA	chr12:77488124-77488351(+)$1	227	108	112	8.9999
UAGA	chr1:55056857-55057087(-)$1	230	15	19	7.5882
CAGA	chr10:98477029-98477287(+)$1	258	112	116	8.9999
CAGA	chr2:71258148-71258374(+)$1	226	84	88	8.9999
AAGA	chr6:29515070-29515298(-)$1	228	71	75	8.3529
GAGA	chr6:113190184-113190415(+)$1	231	111	115	8.0588
AAGA	chr2:168043134-168043372(-)$1	238	15	19	8.3529
CAGA	chr7:135587275-135587519(-)$1	244	230	234	8.9999

#otherMatches

#Struct PSSM
eeem	chr2:132361031-132361261(-)$1	230	148	152	8.9999
dddq	chr3:102854124-102854362(+)$1	238	135	139	8.9999
dooo	chrX:103014611-103014834(-)$1	223	191	195	7.5882
mmmm	chr10:20059458-20059718(+)$1	260	66	70	8.0588
b]cc	chr13:41104719-41104944(+)$1	225	119	123	8.0588
eeqq	chr11:51932631-51932865(+)$1	234	38	42	8.9999
eee[	chr18:53369915-53370153(+)$1	238	161	165	8.3529
22a]	chr15:12047904-12048148(+)$1	244	107	111	8.3529
::bb	chrX:154031571-154031802(-)$1	231	71	75	8.3529
CCC:	chr14:57538044-57538270(+)$1	226	153	157	8.0588
B{CC	chr2:75696894-75697135(+)$1	241	3	7	8.9999
eeee	chr3:16105112-16105347(+)$1	235	103	107	8.3529
cc[d	chr7:66531667-66531889(+)$1	222	102	106	8.9999
ea]g	chr4:108184619-108184861(+)$1	242	139	143	8.3529
ccc[	chr10:20042780-20043029(+)$1	249	29	33	8.0588
ccca	chr11:100324398-100324628(-)$1	230	82	86	8.0588
DDbb	chr13:17843550-17843777(-)$1	227	30	34	8.9999
g[==	chr7:118221864-118222091(-)$1	227	21	25	7.5882
IIII	chr10:62480738-62481001(-)$1	263	35	39	8.0588
EEEE	chr14:52800600-52800835(-)$1	235	62	66	8.9999
BB{G	chr19:12844810-12845039(-)$1	229	4	8	8.0588
::::	chr18:39583946-39584167(-)$1	221	39	43	8.3529
::::	chr11:50196073-50196300(+)$1	227	1	5	7.5882
ssss	chr17:34251242-34251484(-)$1	242	13	17	8.3529
LLLD	chr10:61898105-61898331(-)$1	226	81	85	8.3529
dddd	chr6:56729121-56729345(-)$1	224	76	80	7.5882
==dd	chr10:7393365-7393590(+)$1	225	14	18	8.9999
ffff	chr18:42461338-42461565(+)$1	227	35	39	8.9999
::::	chr9:82826468-82826694(-)$1	226	64	68	8.3529
dddt	chr3:57454542-57454763(-)$1	221	182	186	8.9999
NNBB	chr7:125355936-125356177(-)$1	241	21	25	8.3529
====	chr15:38421313-38421535(-)$1	222	100	104	8.3529
EECC	chr7:17148753-17148982(-)$1	229	40	44	8.3529
g22c	chr9:36595691-36595917(-)$1	226	166	170	8.9999
eeel	chr3:57649121-57649351(-)$1	230	14	18	8.9999
HHHH	chr12:70401156-70401378(+)$1	222	120	124	8.3529
IIII	chr10:86161305-86161526(-)$1	221	2	6	8.9999
III:	chr4:11129309-11129534(+)$1	225	125	129	8.3529
:::C	chr9:110453188-110453416(+)$1	228	4	8	8.9999
2ddd	chr11:79349056-79349287(+)$1	231	61	65	8.9999
GGGG	chr9:54730045-54730287(+)$1	242	13	17	8.0588
ccc[	chr9:56961255-56961482(+)$1	227	2	6	8.9999
b!!c	chr16:91656527-91656766(+)$1	239	22	26	8.0588
qqbb	chr13:55775225-55775450(+)$1	225	73	77	7.5882
hhhf	chr8:98299154-98299382(-)$1	228	93	97	8.9999
ccII	chr11:74502377-74502632(-)$1	255	13	17	8.9999
EEEE	chr11:4982270-4982508(-)$1	238	51	55	8.9999
mbb]	chr17:35381320-35381561(+)$1	241	122	126	8.9999
[ccc	chr10:128253735-128253959(+)$1	224	65	69	8.9999
b]ag	chr9:56952326-56952564(+)$1	238	181	185	8.0588
BLLL	chrX:109746295-109746522(+)$1	227	3	7	8.3529
eggg	chr16:84860529-84860757(+)$1	228	132	136	8.0588
HHHH	chr4:128756051-128756280(+)$1	229	219	223	8.3529
iiii	chr2:14994708-14994932(+)$1	224	196	200	8.3529
HHHH	chrX:91518129-91518373(+)$1	244	25	29	8.0588
ccc]	chr12:105940589-105940810(-)$1	221	94	98	8.0588
JJJJ	chr9:102790696-102790923(+)$1	227	60	64	8.3529
\\\\	chr10:115986005-115986233(-)$1	228	147	151	8.3529
LEEE	chr14:17262821-17263048(+)$1	227	22	26	8.9999
EEDD	chr6:142342482-142342707(+)$1	225	15	19	8.9999
eeee	chr6:113065482-113065709(+)$1	227	97	101	8.0588
:eee	chr11:104374204-104374432(-)$1	228	27	31	8.9999
b[ff	chr11:77506136-77506367(+)$1	231	83	87	7.5882
IIII	chr16:91022830-91023055(-)$1	225	105	109	7.5882
hhh[	chr4:125857458-125857683(-)$1	225	80	84	8.0588
fffx	chr2:37330743-37330975(+)$1	232	73	77	7.5882
gccc	chr18:12295399-12295624(+)$1	225	216	220	7.5882
::::	chr12:35791297-35791518(+)$1	221	133	137	8.9999
fff!	chr6:136752492-136752717(-)$1	225	6	10	8.0588
fddd	chr2:48745784-48746014(+)$1	230	107	111	8.3529
cccr	chr1:44822816-44823041(+)$1	225	85	89	8.9999
!!bb	chr10:39947289-39947524(-)$1	235	54	58	8.9999
FFFF	chr6:31399395-31399620(+)$1	225	97	101	8.9999
hhhh	chr11:80205264-80205499(+)$1	235	10	14	8.3529
EEEE	chr3:94690261-94690482(-)$1	221	112	116	8.9999
a!!c	chr8:98258100-98258326(-)$1	226	50	54	8.0588
c]bb	chr1:36406153-36406380(-)$1	227	121	125	8.9999
d]bb	chr12:77488124-77488351(+)$1	227	108	112	8.9999
EEEE	chr1:55056857-55057087(-)$1	230	15	19	7.5882
bb[e	chr10:98477029-98477287(+)$1	258	112	116	8.9999
D:::	chr2:71258148-71258374(+)$1	226	84	88	8.9999
httt	chr6:29515070-29515298(-)$1	228	71	75	8.3529
f]bb	chr6:113190184-113190415(+)$1	231	111	115	8.0588
FF{D	chr2:168043134-168043372(-)$1	238	15	19	8.3529
IIII	chr7:135587275-135587519(-)$1	244	230	234	8.9999

#DB
(((.	chr2:132361031-132361261(-)$1	1	148	152	8.9999
(((.	chr3:102854124-102854362(+)$1	1	135	139	8.9999
(...	chrX:103014611-103014834(-)$1	1	191	195	7.5882
....	chr10:20059458-20059718(+)$1	1	66	70	8.0588
).))	chr13:41104719-41104944(+)$1	1	119	123	8.0588
((..	chr11:51932631-51932865(+)$1	1	38	42	8.9999
(((.	chr18:53369915-53370153(+)$1	1	161	165	8.3529
..).	chr15:12047904-12048148(+)$1	1	107	111	8.3529
..((	chrX:154031571-154031802(-)$1	1	71	75	8.3529
))).	chr14:57538044-57538270(+)$1	1	153	157	8.0588
(.((	chr2:75696894-75697135(+)$1	1	3	7	8.9999
))))	chr3:16105112-16105347(+)$1	1	103	107	8.3529
((.(	chr7:66531667-66531889(+)$1	1	102	106	8.9999
)).)	chr4:108184619-108184861(+)$1	1	139	143	8.3529
(((.	chr10:20042780-20043029(+)$1	1	29	33	8.0588
))))	chr11:100324398-100324628(-)$1	1	82	86	8.0588
((((	chr13:17843550-17843777(-)$1	1	30	34	8.9999
(.((	chr7:118221864-118222091(-)$1	1	21	25	7.5882
((((	chr10:62480738-62481001(-)$1	1	35	39	8.0588
((((	chr14:52800600-52800835(-)$1	1	62	66	8.9999
((.(	chr19:12844810-12845039(-)$1	1	4	8	8.0588
....	chr18:39583946-39584167(-)$1	1	39	43	8.3529
....	chr11:50196073-50196300(+)$1	1	1	5	7.5882
....	chr17:34251242-34251484(-)$1	1	13	17	8.3529
...(	chr10:61898105-61898331(-)$1	1	81	85	8.3529
))))	chr6:56729121-56729345(-)$1	1	76	80	7.5882
((((	chr10:7393365-7393590(+)$1	1	14	18	8.9999
))))	chr18:42461338-42461565(+)$1	1	35	39	8.9999
....	chr9:82826468-82826694(-)$1	1	64	68	8.3529
(((.	chr3:57454542-57454763(-)$1	1	182	186	8.9999
..((	chr7:125355936-125356177(-)$1	1	21	25	8.3529
((((	chr15:38421313-38421535(-)$1	1	100	104	8.3529
((((	chr7:17148753-17148982(-)$1	1	40	44	8.3529
)..)	chr9:36595691-36595917(-)$1	1	166	170	8.9999
(((.	chr3:57649121-57649351(-)$1	1	14	18	8.9999
))))	chr12:70401156-70401378(+)$1	1	120	124	8.3529
((((	chr10:86161305-86161526(-)$1	1	2	6	8.9999
))).	chr4:11129309-11129534(+)$1	1	125	129	8.3529
...(	chr9:110453188-110453416(+)$1	1	4	8	8.9999
.)))	chr11:79349056-79349287(+)$1	1	61	65	8.9999
((((	chr9:54730045-54730287(+)$1	1	13	17	8.0588
(((.	chr9:56961255-56961482(+)$1	1	2	6	8.9999
(..(	chr16:91656527-91656766(+)$1	1	22	26	8.0588
..))	chr13:55775225-55775450(+)$1	1	73	77	7.5882
((((	chr8:98299154-98299382(-)$1	1	93	97	8.9999
))((	chr11:74502377-74502632(-)$1	1	13	17	8.9999
((((	chr11:4982270-4982508(-)$1	1	51	55	8.9999
.)).	chr17:35381320-35381561(+)$1	1	122	126	8.9999
.(((	chr10:128253735-128253959(+)$1	1	65	69	8.9999
).))	chr9:56952326-56952564(+)$1	1	181	185	8.0588
(...	chrX:109746295-109746522(+)$1	1	3	7	8.3529
((((	chr16:84860529-84860757(+)$1	1	132	136	8.0588
))))	chr4:128756051-128756280(+)$1	1	219	223	8.3529
))))	chr2:14994708-14994932(+)$1	1	196	200	8.3529
((((	chrX:91518129-91518373(+)$1	1	25	29	8.0588
))).	chr12:105940589-105940810(-)$1	1	94	98	8.0588
((((	chr9:102790696-102790923(+)$1	1	60	64	8.3529
....	chr10:115986005-115986233(-)$1	1	147	151	8.3529
.(((	chr14:17262821-17263048(+)$1	1	22	26	8.9999
((((	chr6:142342482-142342707(+)$1	1	15	19	8.9999
((((	chr6:113065482-113065709(+)$1	1	97	101	8.0588
.(((	chr11:104374204-104374432(-)$1	1	27	31	8.9999
(.((	chr11:77506136-77506367(+)$1	1	83	87	7.5882
))))	chr16:91022830-91023055(-)$1	1	105	109	7.5882
(((.	chr4:125857458-125857683(-)$1	1	80	84	8.0588
(((.	chr2:37330743-37330975(+)$1	1	73	77	7.5882
))))	chr18:12295399-12295624(+)$1	1	216	220	7.5882
....	chr12:35791297-35791518(+)$1	1	133	137	8.9999
(((.	chr6:136752492-136752717(-)$1	1	6	10	8.0588
((((	chr2:48745784-48746014(+)$1	1	107	111	8.3529
(((.	chr1:44822816-44823041(+)$1	1	85	89	8.9999
..((	chr10:39947289-39947524(-)$1	1	54	58	8.9999
((((	chr6:31399395-31399620(+)$1	1	97	101	8.9999
((((	chr11:80205264-80205499(+)$1	1	10	14	8.3529
((((	chr3:94690261-94690482(-)$1	1	112	116	8.9999
(..(	chr8:98258100-98258326(-)$1	1	50	54	8.0588
).))	chr1:36406153-36406380(-)$1	1	121	125	8.9999
).))	chr12:77488124-77488351(+)$1	1	108	112	8.9999
((((	chr1:55056857-55057087(-)$1	1	15	19	7.5882
((.(	chr10:98477029-98477287(+)$1	1	112	116	8.9999
(...	chr2:71258148-71258374(+)$1	1	84	88	8.9999
(...	chr6:29515070-29515298(-)$1	1	71	75	8.3529
).))	chr6:113190184-113190415(+)$1	1	111	115	8.0588
((.(	chr2:168043134-168043372(-)$1	1	15	19	8.3529
))))	chr7:135587275-135587519(-)$1	1	230	234	8.9999

#PSSM
C : 0.40	A : 0.27	G : 0.20	U : 0.11	g : 0.01	
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	

#score	719.058823529411
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_CDS_m3_run2.nuc.txt

#NT
CUCC	chr4:131760378-131760689(-)$1	311	68	72	11.9999
CUCC	chr13:54687080-54687306(-)$1	226	39	43	11.9999
CUCC	chrX:91497720-91497952(+)$1	232	69	73	11.9999
CUCC	chr3:98231082-98231302(+)$1	220	34	38	11.9999
CUCC	chr2:172182318-172182544(-)$1	226	202	206	11.9999
CUCC	chr9:106786699-106786935(-)$1	236	7	11	11.9999
CUCC	chr1:157549566-157549800(-)$1	234	34	38	11.9999
CUCC	chr19:7351581-7351810(-)$1	229	200	204	11.9999
CUCC	chr5:31822537-31822761(-)$1	224	17	21	11.9999
CUCC	chr11:109257473-109257703(+)$1	230	44	48	11.9999
cucc	chr6:17587014-17587245(+)$1	231	7	11	11.9999
CUCC	chr3:102860725-102860954(+)$1	229	217	221	11.9999
CUCC	chr11:51415245-51415475(-)$1	230	18	22	11.9999
CUCC	chr4:133308767-133308990(-)$1	223	105	109	11.9999
CUCC	chr13:21814065-21814296(+)$1	231	65	69	11.9999
CUCC	chr13:21283954-21284215(+)$1	261	24	28	11.9999
CUCC	chrX:11624533-11624753(-)$1	220	63	67	11.9999
CUCC	chr7:4959986-4960214(-)$1	228	25	29	11.9999
CUCC	chr4:120819296-120819521(-)$1	225	216	220	11.9999
CUCC	chr18:35732297-35732561(+)$1	264	194	198	11.9999
CUCC	chrX:101157841-101158078(-)$1	237	137	141	11.9999
CUCC	chr11:80208900-80209151(+)$1	251	93	97	11.9999
CUCC	chr1:55295074-55295297(+)$1	223	107	111	11.9999
CUCC	chr11:101124030-101124264(+)$1	234	41	45	11.9999
CUCC	chr4:133236726-133236953(-)$1	227	15	19	11.9999
CUCC	chr14:120902883-120903143(+)$1	260	5	9	11.9999
CUCC	chr7:130313712-130313937(+)$1	225	142	146	11.9999
CUCC	chr1:138524013-138524261(+)$1	248	43	47	11.9999
CUCC	chr7:120460016-120460241(-)$1	225	207	211	11.9999
CUCC	chr4:34498214-34498444(+)$1	230	140	144	11.9999
CUCC	chr4:126707029-126707264(+)$1	235	114	118	11.9999
CUCC	chr17:35380093-35380317(+)$1	224	64	68	11.9999
CUCC	chr12:104023421-104023644(-)$1	223	16	20	11.9999
CUCC	chr6:52154085-52154353(-)$1	268	126	130	11.9999
CUCC	chrX:138159083-138159314(-)$1	231	37	41	11.9999
CUCC	chr7:31371791-31372050(-)$1	259	50	54	11.9999
CUCC	chr7:134168728-134169021(-)$1	293	177	181	11.9999
CUCC	chr17:4996251-4996481(+)$1	230	30	34	11.9999
CUCC	chr11:97224189-97224460(+)$1	271	229	233	11.9999
CUCC	chr15:36537968-36538196(-)$1	228	48	52	11.9999
CUCC	chr10:7639141-7639362(-)$1	221	101	105	11.9999
CUCC	chr11:6374979-6375203(-)$1	224	4	8	11.9999
CUCC	chr7:35835656-35835888(-)$1	232	61	65	11.9999
CUCC	chr11:98657494-98657727(+)$1	233	134	138	11.9999
CUCC	chr14:22805432-22805657(-)$1	225	5	9	11.9999
CUCC	chr18:15220274-15220496(-)$1	222	84	88	11.9999
CUCC	chr19:46130980-46131208(+)$1	228	140	144	11.9999
CUCC	chr2:75514389-75514614(-)$1	225	22	26	11.9999
CUCC	chr11:24064664-24064885(+)$1	221	27	31	11.9999
CUCC	chrX:160861108-160861329(+)$1	221	115	119	11.9999
CUCC	chr3:131045013-131045237(-)$1	224	68	72	11.9999
CUCC	chr12:66057807-66058035(-)$1	228	152	156	11.9999
CUCC	chr9:119342296-119342530(+)$1	234	71	75	11.9999
CUCC	chr9:62729680-62729905(-)$1	225	147	151	11.9999
CUCC	chr9:62658992-62659253(-)$1	261	78	82	11.9999
CUCC	chr7:118222745-118222986(-)$1	241	94	98	11.9999
CUCC	chrX:48370947-48371190(-)$1	243	1	5	11.9999
CUCC	chr13:31900417-31900647(+)$1	230	218	222	11.9999
CUCC	chr9:88351220-88351457(-)$1	237	129	133	11.9999
CUCC	chr9:88350878-88351113(-)$1	235	23	27	11.9999
CUCC	chrX:138158152-138158392(-)$1	240	21	25	11.9999
CUCC	chr17:35971900-35972127(-)$1	227	48	52	11.9999
CUCC	chr15:7140998-7141226(+)$1	228	59	63	11.9999
CUCC	chr14:57575717-57575941(+)$1	224	34	38	11.9999
CUCC	chr8:46136560-46136804(+)$1	244	73	77	11.9999
CUCC	chr17:35972056-35972282(-)$1	226	203	207	11.9999
CUCC	chr1:171917135-171917364(-)$1	229	10	14	11.9999
CUCC	chr11:102152840-102153090(-)$1	250	52	56	11.9999
CUCC	chr1:179377981-179378217(+)$1	236	195	199	11.9999

#otherMatches

#Struct PSSM
FFDD	chr6:128315649-128315880(+)$1	231	9	13	11.9999
hhhh	chr4:131760378-131760689(-)$1	311	68	72	11.9999
:ddd	chr13:54687080-54687306(-)$1	226	39	43	11.9999
dd33	chrX:91497720-91497952(+)$1	232	69	73	11.9999
EEEa	chr3:98231082-98231302(+)$1	220	34	38	11.9999
::::	chr2:172182318-172182544(-)$1	226	202	206	11.9999
CCCE	chr9:106786699-106786935(-)$1	236	7	11	11.9999
++++	chr1:157549566-157549800(-)$1	234	34	38	11.9999
bbpp	chr19:7351581-7351810(-)$1	229	200	204	11.9999
mmmm	chr5:31822537-31822761(-)$1	224	17	21	11.9999
DDD:	chr11:109257473-109257703(+)$1	230	44	48	11.9999
GGGG	chr6:17587014-17587245(+)$1	231	7	11	11.9999
gggg	chr3:102860725-102860954(+)$1	229	217	221	11.9999
ccbb	chr11:51415245-51415475(-)$1	230	18	22	11.9999
pppp	chr4:133308767-133308990(-)$1	223	105	109	11.9999
ffff	chr13:21814065-21814296(+)$1	231	65	69	11.9999
dccc	chr13:21283954-21284215(+)$1	261	24	28	11.9999
3eee	chrX:11624533-11624753(-)$1	220	63	67	11.9999
CEEE	chr7:4959986-4960214(-)$1	228	25	29	11.9999
eeee	chr4:120819296-120819521(-)$1	225	216	220	11.9999
:ccc	chr18:35732297-35732561(+)$1	264	194	198	11.9999
eeem	chrX:101157841-101158078(-)$1	237	137	141	11.9999
3ddd	chr11:80208900-80209151(+)$1	251	93	97	11.9999
EEEE	chr1:55295074-55295297(+)$1	223	107	111	11.9999
ee!!	chr11:101124030-101124264(+)$1	234	41	45	11.9999
gggg	chr4:133236726-133236953(-)$1	227	15	19	11.9999
eee"	chr14:120902883-120903143(+)$1	260	5	9	11.9999
&&&g	chr7:130313712-130313937(+)$1	225	142	146	11.9999
!!cc	chr1:138524013-138524261(+)$1	248	43	47	11.9999
ee::	chr7:120460016-120460241(-)$1	225	207	211	11.9999
::dd	chr4:34498214-34498444(+)$1	230	140	144	11.9999
a]bb	chr4:126707029-126707264(+)$1	235	114	118	11.9999
accc	chr17:35380093-35380317(+)$1	224	64	68	11.9999
eeem	chr12:104023421-104023644(-)$1	223	16	20	11.9999
FFcc	chr6:52154085-52154353(-)$1	268	126	130	11.9999
6666	chrX:138159083-138159314(-)$1	231	37	41	11.9999
====	chr7:31371791-31372050(-)$1	259	50	54	11.9999
d"""	chr7:134168728-134169021(-)$1	293	177	181	11.9999
bmmm	chr17:4996251-4996481(+)$1	230	30	34	11.9999
####	chr11:97224189-97224460(+)$1	271	229	233	11.9999
DDDD	chr15:36537968-36538196(-)$1	228	48	52	11.9999
dd:e	chr10:7639141-7639362(-)$1	221	101	105	11.9999
DDDA	chr11:6374979-6375203(-)$1	224	4	8	11.9999
DDDD	chr7:35835656-35835888(-)$1	232	61	65	11.9999
ggnn	chr11:98657494-98657727(+)$1	233	134	138	11.9999
C{BB	chr14:22805432-22805657(-)$1	225	5	9	11.9999
oooo	chr18:15220274-15220496(-)$1	222	84	88	11.9999
ibba	chr19:46130980-46131208(+)$1	228	140	144	11.9999
c]cc	chr2:75514389-75514614(-)$1	225	22	26	11.9999
::::	chr11:24064664-24064885(+)$1	221	27	31	11.9999
dddd	chrX:160861108-160861329(+)$1	221	115	119	11.9999
KKEE	chr3:131045013-131045237(-)$1	224	68	72	11.9999
eenn	chr12:66057807-66058035(-)$1	228	152	156	11.9999
dd:C	chr9:119342296-119342530(+)$1	234	71	75	11.9999
ff::	chr9:62729680-62729905(-)$1	225	147	151	11.9999
ffff	chr9:62658992-62659253(-)$1	261	78	82	11.9999
JJ::	chr7:118222745-118222986(-)$1	241	94	98	11.9999
::EE	chrX:48370947-48371190(-)$1	243	1	5	11.9999
2ddd	chr13:31900417-31900647(+)$1	230	218	222	11.9999
iiii	chr9:88351220-88351457(-)$1	237	129	133	11.9999
qqqq	chr9:88350878-88351113(-)$1	235	23	27	11.9999
HHHH	chrX:138158152-138158392(-)$1	240	21	25	11.9999
DDD:	chr17:35971900-35972127(-)$1	227	48	52	11.9999
KKEE	chr15:7140998-7141226(+)$1	228	59	63	11.9999
qccc	chr14:57575717-57575941(+)$1	224	34	38	11.9999
c]a]	chr8:46136560-46136804(+)$1	244	73	77	11.9999
ddd!	chr17:35972056-35972282(-)$1	226	203	207	11.9999
CCC{	chr1:171917135-171917364(-)$1	229	10	14	11.9999
A{CC	chr11:102152840-102153090(-)$1	250	52	56	11.9999
ggge	chr1:179377981-179378217(+)$1	236	195	199	11.9999

#DB
((((	chr6:128315649-128315880(+)$1	1	9	13	11.9999
))))	chr4:131760378-131760689(-)$1	1	68	72	11.9999
.(((	chr13:54687080-54687306(-)$1	1	39	43	11.9999
))..	chrX:91497720-91497952(+)$1	1	69	73	11.9999
((((	chr3:98231082-98231302(+)$1	1	34	38	11.9999
....	chr2:172182318-172182544(-)$1	1	202	206	11.9999
((((	chr9:106786699-106786935(-)$1	1	7	11	11.9999
....	chr1:157549566-157549800(-)$1	1	34	38	11.9999
((..	chr19:7351581-7351810(-)$1	1	200	204	11.9999
....	chr5:31822537-31822761(-)$1	1	17	21	11.9999
(((.	chr11:109257473-109257703(+)$1	1	44	48	11.9999
((((	chr6:17587014-17587245(+)$1	1	7	11	11.9999
))))	chr3:102860725-102860954(+)$1	1	217	221	11.9999
))))	chr11:51415245-51415475(-)$1	1	18	22	11.9999
....	chr4:133308767-133308990(-)$1	1	105	109	11.9999
))))	chr13:21814065-21814296(+)$1	1	65	69	11.9999
)(((	chr13:21283954-21284215(+)$1	1	24	28	11.9999
.)))	chrX:11624533-11624753(-)$1	1	63	67	11.9999
((((	chr7:4959986-4960214(-)$1	1	25	29	11.9999
))))	chr4:120819296-120819521(-)$1	1	216	220	11.9999
.(((	chr18:35732297-35732561(+)$1	1	194	198	11.9999
(((.	chrX:101157841-101158078(-)$1	1	137	141	11.9999
.)))	chr11:80208900-80209151(+)$1	1	93	97	11.9999
((((	chr1:55295074-55295297(+)$1	1	107	111	11.9999
((..	chr11:101124030-101124264(+)$1	1	41	45	11.9999
))))	chr4:133236726-133236953(-)$1	1	15	19	11.9999
(((.	chr14:120902883-120903143(+)$1	1	5	9	11.9999
...(	chr7:130313712-130313937(+)$1	1	142	146	11.9999
..((	chr1:138524013-138524261(+)$1	1	43	47	11.9999
))..	chr7:120460016-120460241(-)$1	1	207	211	11.9999
..((	chr4:34498214-34498444(+)$1	1	140	144	11.9999
).))	chr4:126707029-126707264(+)$1	1	114	118	11.9999
((((	chr17:35380093-35380317(+)$1	1	64	68	11.9999
(((.	chr12:104023421-104023644(-)$1	1	16	20	11.9999
((((	chr6:52154085-52154353(-)$1	1	126	130	11.9999
....	chrX:138159083-138159314(-)$1	1	37	41	11.9999
((((	chr7:31371791-31372050(-)$1	1	50	54	11.9999
(...	chr7:134168728-134169021(-)$1	1	177	181	11.9999
(...	chr17:4996251-4996481(+)$1	1	30	34	11.9999
....	chr11:97224189-97224460(+)$1	1	229	233	11.9999
((((	chr15:36537968-36538196(-)$1	1	48	52	11.9999
)).(	chr10:7639141-7639362(-)$1	1	101	105	11.9999
((((	chr11:6374979-6375203(-)$1	1	4	8	11.9999
((((	chr7:35835656-35835888(-)$1	1	61	65	11.9999
((..	chr11:98657494-98657727(+)$1	1	134	138	11.9999
(.((	chr14:22805432-22805657(-)$1	1	5	9	11.9999
....	chr18:15220274-15220496(-)$1	1	84	88	11.9999
))))	chr19:46130980-46131208(+)$1	1	140	144	11.9999
).))	chr2:75514389-75514614(-)$1	1	22	26	11.9999
....	chr11:24064664-24064885(+)$1	1	27	31	11.9999
((((	chrX:160861108-160861329(+)$1	1	115	119	11.9999
..((	chr3:131045013-131045237(-)$1	1	68	72	11.9999
((..	chr12:66057807-66058035(-)$1	1	152	156	11.9999
)).(	chr9:119342296-119342530(+)$1	1	71	75	11.9999
))..	chr9:62729680-62729905(-)$1	1	147	151	11.9999
((((	chr9:62658992-62659253(-)$1	1	78	82	11.9999
((..	chr7:118222745-118222986(-)$1	1	94	98	11.9999
..((	chrX:48370947-48371190(-)$1	1	1	5	11.9999
.)))	chr13:31900417-31900647(+)$1	1	218	222	11.9999
))))	chr9:88351220-88351457(-)$1	1	129	133	11.9999
....	chr9:88350878-88351113(-)$1	1	23	27	11.9999
((((	chrX:138158152-138158392(-)$1	1	21	25	11.9999
(((.	chr17:35971900-35972127(-)$1	1	48	52	11.9999
..((	chr15:7140998-7141226(+)$1	1	59	63	11.9999
.)))	chr14:57575717-57575941(+)$1	1	34	38	11.9999
).).	chr8:46136560-46136804(+)$1	1	73	77	11.9999
(((.	chr17:35972056-35972282(-)$1	1	203	207	11.9999
(((.	chr1:171917135-171917364(-)$1	1	10	14	11.9999
(.((	chr11:102152840-102153090(-)$1	1	52	56	11.9999
))))	chr1:179377981-179378217(+)$1	1	195	199	11.9999

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	

#score	839.9999999999994
#seq	70
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_UTR_m3_run2.nuc.txt

#NT
uuuauauuu	chr11:31835002-31835241(+)$1	239	147	156	19.3076
uuuauauuu	chr13:29041759-29041989(-)$1	230	116	125	19.3076
GAUAUAUUU	chr2:52257705-52257929(-)$1	224	104	113	16.3269
UAUAUAUUU	chr4:133833855-133834091(-)$1	236	208	217	20.8461
uauauauau	chr11:77523318-77523576(+)$1	258	54	63	16.9038
UUUAAAUUU	chrX:39629475-39629717(+)$1	242	23	32	16.3269
uauauauau	chr11:102024714-102024968(-)$1	254	144	153	16.9038
UAAACAUUU	chr1:44822816-44823041(+)$1	225	143	152	13.9230
CAUAUAUUU	chr2:49405976-49406234(+)$1	258	185	194	16.3269
UGUAAAUUU	chr17:65929340-65929568(-)$1	228	22	31	15.2692
UAGACAUUU	chr13:75908606-75908839(+)$1	233	130	139	13.9230
UCUAUAUUU	chr16:91022830-91023055(-)$1	225	175	184	18.0576
UAAAAAUUU	chr12:110054009-110054269(+)$1	260	1	10	13.9230
UAUAUGUUU	chr10:117252013-117252238(-)$1	225	52	61	16.0384
uauauauuu	chr3:9282938-9283170(+)$1	232	140	149	20.8461
UAUAUAUUU	chr18:39572481-39572725(-)$1	244	227	236	20.8461
UUUUUAUUU	chr18:36450705-36450934(+)$1	229	17	26	14.9807
UAUAUAUUA	chr11:94076627-94076869(+)$1	242	18	27	16.4230
UACAUAUUU	chr4:28892535-28892785(+)$1	250	43	52	16.8076
UAUAUAUUU	chr11:53233981-53234200(+)$1	219	121	130	20.8461
UUUAAAUUU	chr6:87792985-87793212(-)$1	227	73	82	16.3269
AAUAUAUUU	chr11:53232604-53232828(+)$1	224	72	81	16.4230
UUUAUAUUA	chr11:53074959-53075198(-)$1	239	97	106	14.8846
uauauauuu	chr17:46306162-46306407(+)$1	245	102	111	20.8461
AAUAUAUUU	chr10:126936008-126936234(+)$1	226	100	109	16.4230
UAAACAUUU	chrX:91522255-91522487(+)$1	232	58	67	13.9230
UAGACAUUU	chr10:39594576-39594807(+)$1	231	205	214	13.9230
UCUAUAUUU	chr4:82451939-82452170(-)$1	231	119	128	18.0576
UUUAAAUUU	chr6:87793076-87793312(-)$1	236	173	182	16.3269
UAUAAAUUU	chr8:60002676-60002901(-)$1	225	115	124	17.8653
UUUAUAAUU	chrX:12868828-12869057(+)$1	229	54	63	14.5961
UUUAUAUCU	chrX:65969295-65969519(+)$1	224	105	114	14.9807
UAUUUAUUU	chr1:178952504-178952738(-)$1	234	139	148	16.5192
UAUAUAUUG	chr11:115884035-115884280(-)$1	245	64	73	16.4230
UGUAAAUUU	chr4:130335918-130336145(+)$1	227	59	68	15.2692
uauauauuu	chr11:5179227-5179458(-)$1	231	109	118	20.8461
UGUAUAUUU	chr5:89088434-89088658(-)$1	224	190	199	18.2500
UAGACAUUU	chr17:34253100-34253379(-)$1	279	36	45	13.9230
UAUGUAUUU	chr5:108515915-108516154(+)$1	239	90	99	16.3269
UAUACAUUU	chr15:98369099-98369325(-)$1	226	100	109	17.8653
UUUAUACUU	chr2:44843729-44843979(-)$1	250	152	161	14.5961
UACAUAUUU	chr1:180259280-180259563(-)$1	283	101	110	16.8076
UUUAUAUUU	chr12:33535758-33535997(+)$1	239	22	31	19.3076
UGUAUAUUU	chr10:117251927-117252155(-)$1	228	44	53	18.2500
UAUAUAUAU	chr10:13869856-13870087(+)$1	231	82	91	16.9038
UAUAUAUUU	chr18:42499874-42500106(+)$1	232	44	53	20.8461
UUUUUAUUU	chr1:58461911-58462133(+)$1	222	125	134	14.9807
uuuauauuu	chr2:72774908-72775131(-)$1	223	195	204	19.3076
UUUACAUUU	chr2:6466201-6466428(-)$1	227	183	192	16.3269
uuuauauau	chr2:33262353-33262587(-)$1	234	124	133	15.3653
UAUAUAUAU	chr13:99611755-99611985(-)$1	230	192	201	16.9038

#otherMatches

#Struct PSSM
EOOOOOOA{	chr3:119422240-119422470(-)$1	230	18	27	16.4230
:iiiiiiii	chr11:31835002-31835241(+)$1	239	147	156	19.3076
sssssssee	chr13:29041759-29041989(-)$1	230	116	125	19.3076
EEEEE::::	chr2:52257705-52257929(-)$1	224	104	113	16.3269
==oooooo=	chr4:133833855-133834091(-)$1	236	208	217	20.8461
ee!!=====	chr11:77523318-77523576(+)$1	258	54	63	16.9038
gggggg333	chrX:39629475-39629717(+)$1	242	23	32	16.3269
iiiiiiioo	chr11:102024714-102024968(-)$1	254	144	153	16.9038
hhddddmmm	chr1:44822816-44823041(+)$1	225	143	152	13.9230
ggggggggl	chr2:49405976-49406234(+)$1	258	185	194	16.3269
]ccc333gg	chr17:65929340-65929568(-)$1	228	22	31	15.2692
888eeeeec	chr13:75908606-75908839(+)$1	233	130	139	13.9230
ccc:JJJJJ	chr16:91022830-91023055(-)$1	225	175	184	18.0576
::FFFFFF{	chr12:110054009-110054269(+)$1	260	1	10	13.9230
ffffhhhhh	chr10:117252013-117252238(-)$1	225	52	61	16.0384
=========	chr3:9282938-9283170(+)$1	232	140	149	20.8461
IIIIII:::	chr18:39572481-39572725(-)$1	244	227	236	20.8461
ffffff"""	chr18:36450705-36450934(+)$1	229	17	26	14.9807
!!ffffffr	chr11:94076627-94076869(+)$1	242	18	27	16.4230
3========	chr4:28892535-28892785(+)$1	250	43	52	16.8076
ggggggg00	chr11:53233981-53234200(+)$1	219	121	130	20.8461
DD}EEEEEY	chr6:87792985-87793212(-)$1	227	73	82	16.3269
JJJJJJJ::	chr11:53232604-53232828(+)$1	224	72	81	16.4230
fffoooooo	chr11:53074959-53075198(-)$1	239	97	106	14.8846
cccqqqqqq	chr17:46306162-46306407(+)$1	245	102	111	20.8461
ee:::::::	chr10:126936008-126936234(+)$1	226	100	109	16.4230
EEEEE{EEE	chrX:91522255-91522487(+)$1	232	58	67	13.9230
dddCCCYYB	chr10:39594576-39594807(+)$1	231	205	214	13.9230
:::::::::	chr4:82451939-82452170(-)$1	231	119	128	18.0576
iiii[bbuu	chr6:87793076-87793312(-)$1	236	173	182	16.3269
+++++++++	chr8:60002676-60002901(-)$1	225	115	124	17.8653
:EEEEEMMM	chrX:12868828-12869057(+)$1	229	54	63	14.5961
ggg:::eee	chrX:65969295-65969519(+)$1	224	105	114	14.9807
g::::::::	chr1:178952504-178952738(-)$1	234	139	148	16.5192
::::::ddd	chr11:115884035-115884280(-)$1	245	64	73	16.4230
Geeeeeooo	chr4:130335918-130336145(+)$1	227	59	68	15.2692
dddhhhhhh	chr11:5179227-5179458(-)$1	231	109	118	20.8461
e]eeeee66	chr5:89088434-89088658(-)$1	224	190	199	18.2500
FFF::::::	chr17:34253100-34253379(-)$1	279	36	45	13.9230
qqqeeeee:	chr5:108515915-108516154(+)$1	239	90	99	16.3269
ddppppppp	chr15:98369099-98369325(-)$1	226	100	109	17.8653
qqqqqqbbi	chr2:44843729-44843979(-)$1	250	152	161	14.5961
ee7777777	chr1:180259280-180259563(-)$1	283	101	110	16.8076
##ggggggg	chr12:33535758-33535997(+)$1	239	22	31	19.3076
f++++++++	chr10:117251927-117252155(-)$1	228	44	53	18.2500
?GGGGGGGc	chr10:13869856-13870087(+)$1	231	82	91	16.9038
HHHHHHLLL	chr18:42499874-42500106(+)$1	232	44	53	20.8461
d[ccc####	chr1:58461911-58462133(+)$1	222	125	134	14.9807
c:hhhhhhh	chr2:72774908-72775131(-)$1	223	195	204	19.3076
iii333===	chr2:6466201-6466428(-)$1	227	183	192	16.3269
::::::eee	chr2:33262353-33262587(-)$1	234	124	133	15.3653
fffffmmmm	chr13:99611755-99611985(-)$1	230	192	201	16.9038

#DB
(......(.	chr3:119422240-119422470(-)$1	1	18	27	16.4230
.((((((((	chr11:31835002-31835241(+)$1	1	147	156	19.3076
.......))	chr13:29041759-29041989(-)$1	1	116	125	19.3076
(((((....	chr2:52257705-52257929(-)$1	1	104	113	16.3269
((......)	chr4:133833855-133834091(-)$1	1	208	217	20.8461
((..(((((	chr11:77523318-77523576(+)$1	1	54	63	16.9038
))))))...	chrX:39629475-39629717(+)$1	1	23	32	16.3269
(((((((..	chr11:102024714-102024968(-)$1	1	144	153	16.9038
((((((...	chr1:44822816-44823041(+)$1	1	143	152	13.9230
)(((((((.	chr2:49405976-49406234(+)$1	1	185	194	16.3269
.)))...))	chr17:65929340-65929568(-)$1	1	22	31	15.2692
...)))))(	chr13:75908606-75908839(+)$1	1	130	139	13.9230
))).)))))	chr16:91022830-91023055(-)$1	1	175	184	18.0576
..((((((.	chr12:110054009-110054269(+)$1	1	1	10	13.9230
(((((((((	chr10:117252013-117252238(-)$1	1	52	61	16.0384
)))))))))	chr3:9282938-9283170(+)$1	1	140	149	20.8461
))))))...	chr18:39572481-39572725(-)$1	1	227	236	20.8461
((((((...	chr18:36450705-36450934(+)$1	1	17	26	14.9807
..((((((.	chr11:94076627-94076869(+)$1	1	18	27	16.4230
.))))))))	chr4:28892535-28892785(+)$1	1	43	52	16.8076
)))))))..	chr11:53233981-53234200(+)$1	1	121	130	20.8461
)).))))).	chr6:87792985-87793212(-)$1	1	73	82	16.3269
(((((((..	chr11:53232604-53232828(+)$1	1	72	81	16.4230
(((......	chr11:53074959-53075198(-)$1	1	97	106	14.8846
(((......	chr17:46306162-46306407(+)$1	1	102	111	20.8461
)).......	chr10:126936008-126936234(+)$1	1	100	109	16.4230
(((((.(((	chrX:91522255-91522487(+)$1	1	58	67	13.9230
))))))..)	chr10:39594576-39594807(+)$1	1	205	214	13.9230
.........	chr4:82451939-82452170(-)$1	1	119	128	18.0576
((((.((..	chr6:87793076-87793312(-)$1	1	173	182	16.3269
.........	chr8:60002676-60002901(-)$1	1	115	124	17.8653
.(((((...	chrX:12868828-12869057(+)$1	1	54	63	14.5961
)))...(((	chrX:65969295-65969519(+)$1	1	105	114	14.9807
)........	chr1:178952504-178952738(-)$1	1	139	148	16.5192
......(((	chr11:115884035-115884280(-)$1	1	64	73	16.4230
((((((...	chr4:130335918-130336145(+)$1	1	59	68	15.2692
)))))))))	chr11:5179227-5179458(-)$1	1	109	118	20.8461
).)))))..	chr5:89088434-89088658(-)$1	1	190	199	18.2500
(((......	chr17:34253100-34253379(-)$1	1	36	45	13.9230
...))))).	chr5:108515915-108516154(+)$1	1	90	99	16.3269
((.......	chr15:98369099-98369325(-)$1	1	100	109	17.8653
......)))	chr2:44843729-44843979(-)$1	1	152	161	14.5961
)).......	chr1:180259280-180259563(-)$1	1	101	110	16.8076
..(((((((	chr12:33535758-33535997(+)$1	1	22	31	19.3076
(........	chr10:117251927-117252155(-)$1	1	44	53	18.2500
.)))))))(	chr10:13869856-13870087(+)$1	1	82	91	16.9038
((((((...	chr18:42499874-42500106(+)$1	1	44	53	20.8461
(.(((....	chr1:58461911-58462133(+)$1	1	125	134	14.9807
).(((((((	chr2:72774908-72775131(-)$1	1	195	204	19.3076
)))...)))	chr2:6466201-6466428(-)$1	1	183	192	16.3269
......(((	chr2:33262353-33262587(-)$1	1	124	133	15.3653
(((((....	chr13:99611755-99611985(-)$1	1	192	201	16.9038

#PSSM
U : 0.75	u : 0.17	A : 0.03	G : 0.01	C : 0.01	
A : 0.49	U : 0.21	a : 0.09	u : 0.07	G : 0.07	C : 0.03	
U : 0.67	u : 0.17	A : 0.05	G : 0.05	C : 0.03	
A : 0.75	a : 0.17	U : 0.05	G : 0.01	
U : 0.55	u : 0.17	A : 0.13	C : 0.13	
A : 0.80	a : 0.17	G : 0.01	
U : 0.78	u : 0.17	A : 0.01	C : 0.01	
U : 0.76	u : 0.11	a : 0.05	A : 0.03	C : 0.01	
U : 0.75	u : 0.17	G : 0.03	A : 0.03	

#score	880.1538461538464
#seq	52
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_CDS_m2_run1.nuc.txt

#NT
UGGA	chr2:163452010-163452221(-)$1	211	89	93	11.9999
UGGA	chr9:25085085-25085305(+)$1	220	46	50	11.9999
UGGA	chrX:101161752-101161969(-)$1	217	38	42	11.9999
UGGA	chr6:39349746-39349960(-)$1	214	73	77	11.9999
UGGA	chr17:13113139-13113349(+)$1	210	173	177	11.9999
UGGA	chr19:6311038-6311254(+)$1	216	44	48	11.9999
UGGA	chr14:56449204-56449423(+)$1	219	26	30	11.9999
UGGA	chr14:55525927-55526144(+)$1	217	197	201	11.9999
UGGA	chr1:58476892-58477109(-)$1	217	12	16	11.9999
UGGA	chr1:88249642-88249854(-)$1	212	46	50	11.9999
UGGA	chr4:126427209-126427419(-)$1	210	33	37	11.9999
UGGA	chr17:86568017-86568235(+)$1	218	27	31	11.9999
UGGA	chr6:91315847-91316057(+)$1	210	59	63	11.9999
UGGA	chr4:118805944-118806155(+)$1	211	111	115	11.9999
UGGA	chr7:20282283-20282510(-)$1	227	66	70	11.9999
UGGA	chr6:38279062-38279281(-)$1	219	71	75	11.9999
UGGA	chr2:114021224-114021442(-)$1	218	166	170	11.9999
UGGA	chr3:30717682-30717893(+)$1	211	120	124	11.9999
UGGA	chr17:13162254-13162471(-)$1	217	106	110	11.9999
UGGA	chr7:112705065-112705278(+)$1	213	69	73	11.9999
UGGA	chr17:24861145-24861364(-)$1	219	44	48	11.9999
UGGA	chr1:63591931-63592148(+)$1	217	124	128	11.9999
UGGA	chr3:95464539-95464750(+)$1	211	100	104	11.9999
UGGA	chr11:6368410-6368628(-)$1	218	8	12	11.9999
UGGA	chr5:92499313-92499530(-)$1	217	99	103	11.9999
UGGA	chr2:71711515-71711727(+)$1	212	47	51	11.9999
UGGA	chr15:96520504-96520723(-)$1	219	102	106	11.9999
UGGA	chr3:41417793-41418003(+)$1	210	146	150	11.9999
UGGA	chr13:54700364-54700585(-)$1	221	33	37	11.9999
UGGA	chr7:31241422-31241648(-)$1	226	164	168	11.9999
UGGA	chr9:43947201-43947411(+)$1	210	7	11	11.9999
UGGA	chr8:72859180-72859398(-)$1	218	47	51	11.9999
UGGA	chr1:182836654-182836872(+)$1	218	84	88	11.9999
UGGA	chr18:34464241-34464454(+)$1	213	28	32	11.9999
UGGA	chr7:129251066-129251282(-)$1	216	45	49	11.9999
UGGA	chr6:134965803-134966013(+)$1	210	63	67	11.9999
UGGA	chr5:93591167-93591380(+)$1	213	42	46	11.9999
UGGA	chr2:91486286-91486500(-)$1	214	110	114	11.9999
UGGA	chr11:95439217-95439428(-)$1	211	54	58	11.9999
UGGA	chr2:118927706-118927924(+)$1	218	55	59	11.9999
UGGA	chr4:24444210-24444423(+)$1	213	2	6	11.9999
ugga	chr9:122765782-122765993(-)$1	211	72	76	11.9999
UGGA	chr7:20323394-20323618(-)$1	224	21	25	11.9999
UGGA	chr4:34757736-34757954(-)$1	218	118	122	11.9999
UGGA	chr17:56758690-56758906(+)$1	216	135	139	11.9999
UGGA	chr11:87862522-87862749(+)$1	227	35	39	11.9999
UGGA	chr7:88183074-88183292(+)$1	218	85	89	11.9999
UGGA	chrX:71006392-71006604(-)$1	212	3	7	11.9999
UGGA	chr17:46569934-46570152(-)$1	218	121	125	11.9999
UGGA	chr3:95463252-95463469(+)$1	217	5	9	11.9999
UGGA	chrM:14328-14539(+)$1	211	127	131	11.9999
UGGA	chr13:63612803-63613023(-)$1	220	118	122	11.9999
UGGA	chr11:86539775-86539993(-)$1	218	55	59	11.9999
UGGA	chr11:69557341-69557558(-)$1	217	92	96	11.9999
UGGA	chr1:136485362-136485580(+)$1	218	39	43	11.9999
UGGA	chr18:78018544-78018763(+)$1	219	214	218	11.9999
UGGA	chr16:13147657-13147874(+)$1	217	0	4	11.9999
UGGA	chr19:32540401-32540625(-)$1	224	110	114	11.9999
UGGA	chr2:51951364-51951581(+)$1	217	107	111	11.9999
UGGA	chr6:67231645-67231871(+)$1	226	18	22	11.9999
UGGA	chr17:56715009-56715228(-)$1	219	68	72	11.9999
UGGA	chr1:55053747-55053969(-)$1	222	160	164	11.9999
UGGA	chr19:23794702-23794926(+)$1	224	78	82	11.9999
UGGA	chr8:124408804-124409024(-)$1	220	125	129	11.9999
UGGA	chr8:87434706-87434925(+)$1	219	168	172	11.9999
UGGA	chr10:86166998-86167212(-)$1	214	45	49	11.9999
UGGA	chr2:129033340-129033558(+)$1	218	41	45	11.9999
UGGA	chr6:122268551-122268766(-)$1	215	5	9	11.9999
UGGA	chr1:193645489-193645707(+)$1	218	48	52	11.9999
UGGA	chr12:104006279-104006490(+)$1	211	82	86	11.9999
UGGA	chr16:91659872-91660086(+)$1	214	38	42	11.9999
UGGA	chr14:51463293-51463503(-)$1	210	97	101	11.9999
UGGA	chr4:55025356-55025566(+)$1	210	172	176	11.9999
UGGA	chr2:25104587-25104802(-)$1	215	3	7	11.9999
UGGA	chr17:56740223-56740446(+)$1	223	59	63	11.9999
UGGA	chr8:72315296-72315508(+)$1	212	124	128	11.9999
UGGA	chr9:108849832-108850051(+)$1	219	148	152	11.9999

#otherMatches

#Struct PSSM
====	chr11:80208496-80208721(+)$1	225	187	191	11.9999
]ccc	chr2:163452010-163452221(-)$1	211	89	93	11.9999
eee!	chr9:25085085-25085305(+)$1	220	46	50	11.9999
a[dd	chrX:101161752-101161969(-)$1	217	38	42	11.9999
ee##	chr6:39349746-39349960(-)$1	214	73	77	11.9999
FFF}	chr17:13113139-13113349(+)$1	210	173	177	11.9999
bb]d	chr19:6311038-6311254(+)$1	216	44	48	11.9999
A{CC	chr14:56449204-56449423(+)$1	219	26	30	11.9999
ggg:	chr14:55525927-55526144(+)$1	217	197	201	11.9999
GGGG	chr1:58476892-58477109(-)$1	217	12	16	11.9999
hhh5	chr1:88249642-88249854(-)$1	212	46	50	11.9999
EEKK	chr4:126427209-126427419(-)$1	210	33	37	11.9999
ee!!	chr17:86568017-86568235(+)$1	218	27	31	11.9999
FF::	chr6:91315847-91316057(+)$1	210	59	63	11.9999
d:dd	chr4:118805944-118806155(+)$1	211	111	115	11.9999
3fff	chr7:20282283-20282510(-)$1	227	66	70	11.9999
dd[c	chr6:38279062-38279281(-)$1	219	71	75	11.9999
HHHH	chr2:114021224-114021442(-)$1	218	166	170	11.9999
ccss	chr3:30717682-30717893(+)$1	211	120	124	11.9999
ffff	chr17:13162254-13162471(-)$1	217	106	110	11.9999
hhhh	chr7:112705065-112705278(+)$1	213	69	73	11.9999
MGGG	chr17:24861145-24861364(-)$1	219	44	48	11.9999
dddd	chr1:63591931-63592148(+)$1	217	124	128	11.9999
ffff	chr3:95464539-95464750(+)$1	211	100	104	11.9999
ee[e	chr11:6368410-6368628(-)$1	218	8	12	11.9999
]eee	chr5:92499313-92499530(-)$1	217	99	103	11.9999
{CCC	chr2:71711515-71711727(+)$1	212	47	51	11.9999
dddd	chr15:96520504-96520723(-)$1	219	102	106	11.9999
HHHH	chr3:41417793-41418003(+)$1	210	146	150	11.9999
bbrr	chr13:54700364-54700585(-)$1	221	33	37	11.9999
G}BB	chr7:31241422-31241648(-)$1	226	164	168	11.9999
MMMM	chr9:43947201-43947411(+)$1	210	7	11	11.9999
]ggg	chr8:72859180-72859398(-)$1	218	47	51	11.9999
####	chr1:182836654-182836872(+)$1	218	84	88	11.9999
ddd]	chr18:34464241-34464454(+)$1	213	28	32	11.9999
fmmm	chr7:129251066-129251282(-)$1	216	45	49	11.9999
dddo	chr6:134965803-134966013(+)$1	210	63	67	11.9999
dddd	chr5:93591167-93591380(+)$1	213	42	46	11.9999
IIII	chr2:91486286-91486500(-)$1	214	110	114	11.9999
DDDD	chr11:95439217-95439428(-)$1	211	54	58	11.9999
iiii	chr2:118927706-118927924(+)$1	218	55	59	11.9999
dd""	chr4:24444210-24444423(+)$1	213	2	6	11.9999
cccd	chr9:122765782-122765993(-)$1	211	72	76	11.9999
FFFF	chr7:20323394-20323618(-)$1	224	21	25	11.9999
ddd4	chr4:34757736-34757954(-)$1	218	118	122	11.9999
iiii	chr17:56758690-56758906(+)$1	216	135	139	11.9999
mccc	chr11:87862522-87862749(+)$1	227	35	39	11.9999
hhh]	chr7:88183074-88183292(+)$1	218	85	89	11.9999
::::	chrX:71006392-71006604(-)$1	212	3	7	11.9999
9999	chr17:46569934-46570152(-)$1	218	121	125	11.9999
f(((	chr3:95463252-95463469(+)$1	217	5	9	11.9999
gggg	chrM:14328-14539(+)$1	211	127	131	11.9999
EEEZ	chr13:63612803-63613023(-)$1	220	118	122	11.9999
CCCK	chr11:86539775-86539993(-)$1	218	55	59	11.9999
eeee	chr11:69557341-69557558(-)$1	217	92	96	11.9999
$$dd	chr1:136485362-136485580(+)$1	218	39	43	11.9999
}DDD	chr18:78018544-78018763(+)$1	219	214	218	11.9999
:A{C	chr16:13147657-13147874(+)$1	217	0	4	11.9999
HHH:	chr19:32540401-32540625(-)$1	224	110	114	11.9999
2ddd	chr2:51951364-51951581(+)$1	217	107	111	11.9999
:ccc	chr6:67231645-67231871(+)$1	226	18	22	11.9999
BB{C	chr17:56715009-56715228(-)$1	219	68	72	11.9999
555h	chr1:55053747-55053969(-)$1	222	160	164	11.9999
qddd	chr19:23794702-23794926(+)$1	224	78	82	11.9999
!fff	chr8:124408804-124409024(-)$1	220	125	129	11.9999
mggg	chr8:87434706-87434925(+)$1	219	168	172	11.9999
mmma	chr10:86166998-86167212(-)$1	214	45	49	11.9999
ddd^	chr2:129033340-129033558(+)$1	218	41	45	11.9999
{EEE	chr6:122268551-122268766(-)$1	215	5	9	11.9999
DDDK	chr1:193645489-193645707(+)$1	218	48	52	11.9999
:eee	chr12:104006279-104006490(+)$1	211	82	86	11.9999
ccc]	chr16:91659872-91660086(+)$1	214	38	42	11.9999
cccc	chr14:51463293-51463503(-)$1	210	97	101	11.9999
dddH	chr4:55025356-55025566(+)$1	210	172	176	11.9999
[ccc	chr2:25104587-25104802(-)$1	215	3	7	11.9999
ddd]	chr17:56740223-56740446(+)$1	223	59	63	11.9999
ccc[	chr8:72315296-72315508(+)$1	212	124	128	11.9999
4eee	chr9:108849832-108850051(+)$1	219	148	152	11.9999

#DB
))))	chr11:80208496-80208721(+)$1	1	187	191	11.9999
.)))	chr2:163452010-163452221(-)$1	1	89	93	11.9999
(((.	chr9:25085085-25085305(+)$1	1	46	50	11.9999
(.((	chrX:101161752-101161969(-)$1	1	38	42	11.9999
((..	chr6:39349746-39349960(-)$1	1	73	77	11.9999
))).	chr17:13113139-13113349(+)$1	1	173	177	11.9999
)).)	chr19:6311038-6311254(+)$1	1	44	48	11.9999
(.((	chr14:56449204-56449423(+)$1	1	26	30	11.9999
))).	chr14:55525927-55526144(+)$1	1	197	201	11.9999
((((	chr1:58476892-58477109(-)$1	1	12	16	11.9999
))).	chr1:88249642-88249854(-)$1	1	46	50	11.9999
((..	chr4:126427209-126427419(-)$1	1	33	37	11.9999
((..	chr17:86568017-86568235(+)$1	1	27	31	11.9999
((..	chr6:91315847-91316057(+)$1	1	59	63	11.9999
).((	chr4:118805944-118806155(+)$1	1	111	115	11.9999
.)))	chr7:20282283-20282510(-)$1	1	66	70	11.9999
((.(	chr6:38279062-38279281(-)$1	1	71	75	11.9999
))))	chr2:114021224-114021442(-)$1	1	166	170	11.9999
((..	chr3:30717682-30717893(+)$1	1	120	124	11.9999
))))	chr17:13162254-13162471(-)$1	1	106	110	11.9999
((((	chr7:112705065-112705278(+)$1	1	69	73	11.9999
.(((	chr17:24861145-24861364(-)$1	1	44	48	11.9999
((((	chr1:63591931-63592148(+)$1	1	124	128	11.9999
((((	chr3:95464539-95464750(+)$1	1	100	104	11.9999
((.(	chr11:6368410-6368628(-)$1	1	8	12	11.9999
.)))	chr5:92499313-92499530(-)$1	1	99	103	11.9999
.(((	chr2:71711515-71711727(+)$1	1	47	51	11.9999
((((	chr15:96520504-96520723(-)$1	1	102	106	11.9999
))))	chr3:41417793-41418003(+)$1	1	146	150	11.9999
((..	chr13:54700364-54700585(-)$1	1	33	37	11.9999
).))	chr7:31241422-31241648(-)$1	1	164	168	11.9999
....	chr9:43947201-43947411(+)$1	1	7	11	11.9999
.)))	chr8:72859180-72859398(-)$1	1	47	51	11.9999
....	chr1:182836654-182836872(+)$1	1	84	88	11.9999
))).	chr18:34464241-34464454(+)$1	1	28	32	11.9999
(...	chr7:129251066-129251282(-)$1	1	45	49	11.9999
(((.	chr6:134965803-134966013(+)$1	1	63	67	11.9999
))))	chr5:93591167-93591380(+)$1	1	42	46	11.9999
))))	chr2:91486286-91486500(-)$1	1	110	114	11.9999
((((	chr11:95439217-95439428(-)$1	1	54	58	11.9999
))))	chr2:118927706-118927924(+)$1	1	55	59	11.9999
((..	chr4:24444210-24444423(+)$1	1	2	6	11.9999
))))	chr9:122765782-122765993(-)$1	1	72	76	11.9999
((((	chr7:20323394-20323618(-)$1	1	21	25	11.9999
))).	chr4:34757736-34757954(-)$1	1	118	122	11.9999
))))	chr17:56758690-56758906(+)$1	1	135	139	11.9999
.)))	chr11:87862522-87862749(+)$1	1	35	39	11.9999
))).	chr7:88183074-88183292(+)$1	1	85	89	11.9999
....	chrX:71006392-71006604(-)$1	1	3	7	11.9999
....	chr17:46569934-46570152(-)$1	1	121	125	11.9999
(...	chr3:95463252-95463469(+)$1	1	5	9	11.9999
((((	chrM:14328-14539(+)$1	1	127	131	11.9999
))).	chr13:63612803-63613023(-)$1	1	118	122	11.9999
(((.	chr11:86539775-86539993(-)$1	1	55	59	11.9999
))))	chr11:69557341-69557558(-)$1	1	92	96	11.9999
..((	chr1:136485362-136485580(+)$1	1	39	43	11.9999
.)))	chr18:78018544-78018763(+)$1	1	214	218	11.9999
.(.(	chr16:13147657-13147874(+)$1	1	0	4	11.9999
(((.	chr19:32540401-32540625(-)$1	1	110	114	11.9999
.)))	chr2:51951364-51951581(+)$1	1	107	111	11.9999
.(((	chr6:67231645-67231871(+)$1	1	18	22	11.9999
((.(	chr17:56715009-56715228(-)$1	1	68	72	11.9999
...)	chr1:55053747-55053969(-)$1	1	160	164	11.9999
.)))	chr19:23794702-23794926(+)$1	1	78	82	11.9999
.(((	chr8:124408804-124409024(-)$1	1	125	129	11.9999
.)))	chr8:87434706-87434925(+)$1	1	168	172	11.9999
...)	chr10:86166998-86167212(-)$1	1	45	49	11.9999
(((.	chr2:129033340-129033558(+)$1	1	41	45	11.9999
.(((	chr6:122268551-122268766(-)$1	1	5	9	11.9999
(((.	chr1:193645489-193645707(+)$1	1	48	52	11.9999
.(((	chr12:104006279-104006490(+)$1	1	82	86	11.9999
))).	chr16:91659872-91660086(+)$1	1	38	42	11.9999
((((	chr14:51463293-51463503(-)$1	1	97	101	11.9999
))))	chr4:55025356-55025566(+)$1	1	172	176	11.9999
.(((	chr2:25104587-25104802(-)$1	1	3	7	11.9999
))).	chr17:56740223-56740446(+)$1	1	59	63	11.9999
(((.	chr8:72315296-72315508(+)$1	1	124	128	11.9999
.)))	chr9:108849832-108850051(+)$1	1	148	152	11.9999

#PSSM
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	

#score	935.9999999999995
#seq	78
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_UTR_m1_run1.nuc.txt

#NT
AAUG	chr18:73798874-73799096(-)$1	222	68	72	12.0000
aauG	chr18:35776627-35776853(+)$1	226	196	200	12.0000
AAUG	chr2:72775891-72776129(-)$1	238	145	149	12.0000
AAUG	chr15:38421313-38421535(-)$1	222	189	193	12.0000
AAUG	chr5:147104129-147104368(+)$1	239	192	196	12.0000
AAUG	chr4:132753888-132754116(+)$1	228	36	40	12.0000
AAUG	chr8:92771497-92771747(-)$1	250	96	100	12.0000
AAUG	chr7:120050022-120050247(+)$1	225	38	42	12.0000
AAUG	chr3:22114046-22114270(+)$1	224	7	11	12.0000
AAUG	chr15:98663428-98663662(-)$1	234	28	32	12.0000
AAUG	chr4:33332762-33332988(-)$1	226	54	58	12.0000
AAUG	chr16:32019548-32019771(-)$1	223	119	123	12.0000
AAUG	chr13:105628242-105628467(+)$1	225	106	110	12.0000
AAUG	chr10:117252013-117252238(-)$1	225	24	28	12.0000
AAUG	chr10:127513942-127514167(+)$1	225	69	73	12.0000
AAUG	chr13:17974052-17974279(-)$1	227	4	8	12.0000
AAUG	chr1:56851027-56851286(-)$1	259	39	43	12.0000
AAUG	chr11:97021391-97021615(-)$1	224	17	21	12.0000
AAUG	chr16:30313224-30313475(-)$1	251	147	151	12.0000
AAUG	chr4:109126178-109126410(-)$1	232	64	68	12.0000
AAUG	chrX:11613883-11614110(-)$1	227	101	105	12.0000
AAUG	chr8:131248001-131248227(+)$1	226	96	100	12.0000
AAUG	chr14:120828844-120829072(+)$1	228	158	162	12.0000
AAUG	chr2:6466125-6466347(-)$1	222	11	15	12.0000
AAUG	chr1:138526107-138526333(+)$1	226	138	142	12.0000
AAUG	chr1:84720702-84720925(-)$1	223	27	31	12.0000
AAUG	chr6:145165210-145165428(-)$1	218	34	38	12.0000
AAUG	chr2:44839475-44839711(-)$1	236	124	128	12.0000
AAUG	chr5:122903601-122903837(-)$1	236	16	20	12.0000
AAUG	chr16:8857356-8857584(+)$1	228	40	44	12.0000
AAUG	chr9:69855136-69855367(+)$1	231	60	64	12.0000
AAUG	chr3:16113919-16114152(+)$1	233	84	88	12.0000
AAUG	chrX:35966352-35966580(+)$1	228	91	95	12.0000
AAUG	chr7:97593828-97594070(+)$1	242	17	21	12.0000
AAUG	chr11:86313209-86313440(-)$1	231	139	143	12.0000
aaug	chr15:81481626-81481851(+)$1	225	121	125	12.0000
AAUG	chr15:36700551-36700780(-)$1	229	46	50	12.0000
AAUG	chr17:46306162-46306407(+)$1	245	141	145	12.0000
AAUG	chr17:66184336-66184569(+)$1	233	79	83	12.0000
AAUG	chr11:52055988-52056214(+)$1	226	72	76	12.0000
AAUG	chr1:82891781-82892062(+)$1	281	89	93	12.0000
AAUG	chr4:82451939-82452170(-)$1	231	59	63	12.0000
AAUG	chr11:5179227-5179458(-)$1	231	0	4	12.0000
AAUG	chr18:36448332-36448558(+)$1	226	104	108	12.0000
AAUG	chr4:123027679-123027907(-)$1	228	38	42	12.0000
AAUG	chr14:35559193-35559426(+)$1	233	100	104	12.0000
AAUG	chr9:88348261-88348588(-)$1	327	223	227	12.0000
AAUG	chr5:130611454-130611683(+)$1	229	96	100	12.0000
AAUG	chr3:29878922-29879152(-)$1	230	115	119	12.0000
AAUG	chr16:94915011-94915237(+)$1	226	122	126	12.0000
AAUG	chr11:86080625-86080850(-)$1	225	196	200	12.0000
AAUG	chr6:87793683-87793904(-)$1	221	85	89	12.0000
AAUG	chr16:33499010-33499235(+)$1	225	96	100	12.0000
AAUG	chr9:88345990-88346229(-)$1	239	12	16	12.0000
AAUG	chr2:6463366-6463597(-)$1	231	54	58	12.0000
AAUG	chr13:34993398-34993627(+)$1	229	66	70	12.0000
AAUG	chrX:54639360-54639587(-)$1	227	162	166	12.0000
AAUG	chr6:21923766-21923996(+)$1	230	109	113	12.0000
AAUG	chr3:65752580-65752811(-)$1	231	10	14	12.0000
AAUG	chrX:148462268-148462514(+)$1	246	74	78	12.0000
AAUG	chr11:65520423-65520659(-)$1	236	25	29	12.0000
AAUG	chr9:82762535-82762760(-)$1	225	24	28	12.0000
AAUG	chr8:129114707-129114938(-)$1	231	44	48	12.0000
AAUG	chr4:102835851-102836093(+)$1	242	31	35	12.0000
AAUG	chr7:90019456-90019684(+)$1	228	79	83	12.0000
AAUG	chr1:180258222-180258452(-)$1	230	161	165	12.0000
AAUG	chr2:37229727-37229971(-)$1	244	74	78	12.0000
AAUG	chrX:109748206-109748451(+)$1	245	58	62	12.0000
aaug	chr2:37230520-37230745(-)$1	225	74	78	12.0000
AAUG	chrX:12868828-12869057(+)$1	229	89	93	12.0000
AAUG	chr17:10401405-10401656(-)$1	251	47	51	12.0000
AAUG	chrX:91521246-91521474(+)$1	228	9	13	12.0000
AAUG	chr7:118215613-118215844(-)$1	231	127	131	12.0000
AAUG	chr6:35459796-35460026(-)$1	230	107	111	12.0000
AAUG	chr2:49405976-49406234(+)$1	258	165	169	12.0000
AAUG	chr8:82298932-82299160(+)$1	228	9	13	12.0000
AAUG	chr8:24052548-24052786(+)$1	238	54	58	12.0000
AAUG	chrX:138753901-138754136(-)$1	235	16	20	12.0000
AAUG	chr12:35804338-35804576(+)$1	238	57	61	12.0000
AAUG	chr14:79982095-79982320(+)$1	225	90	94	12.0000

#otherMatches

#Struct PSSM
====	chr11:87895754-87896007(+)$1	253	59	63	12.0000
hnnn	chr18:73798874-73799096(-)$1	222	68	72	12.0000
:EEE	chr18:35776627-35776853(+)$1	226	196	200	12.0000
::::	chr2:72775891-72776129(-)$1	238	145	149	12.0000
22ff	chr15:38421313-38421535(-)$1	222	189	193	12.0000
///D	chr5:147104129-147104368(+)$1	239	192	196	12.0000
::ee	chr4:132753888-132754116(+)$1	228	36	40	12.0000
^^^^	chr8:92771497-92771747(-)$1	250	96	100	12.0000
::ff	chr7:120050022-120050247(+)$1	225	38	42	12.0000
OOOD	chr3:22114046-22114270(+)$1	224	7	11	12.0000
::gg	chr15:98663428-98663662(-)$1	234	28	32	12.0000
:fff	chr4:33332762-33332988(-)$1	226	54	58	12.0000
iiii	chr16:32019548-32019771(-)$1	223	119	123	12.0000
+hhh	chr13:105628242-105628467(+)$1	225	106	110	12.0000
mmmm	chr10:117252013-117252238(-)$1	225	24	28	12.0000
dddd	chr10:127513942-127514167(+)$1	225	69	73	12.0000
:::c	chr13:17974052-17974279(-)$1	227	4	8	12.0000
^^^^	chr1:56851027-56851286(-)$1	259	39	43	12.0000
HH:f	chr11:97021391-97021615(-)$1	224	17	21	12.0000
mmee	chr16:30313224-30313475(-)$1	251	147	151	12.0000
gggg	chr4:109126178-109126410(-)$1	232	64	68	12.0000
cc[b	chrX:11613883-11614110(-)$1	227	101	105	12.0000
f]cc	chr8:131248001-131248227(+)$1	226	96	100	12.0000
b[hh	chr14:120828844-120829072(+)$1	228	158	162	12.0000
!!ff	chr2:6466125-6466347(-)$1	222	11	15	12.0000
""dd	chr1:138526107-138526333(+)$1	226	138	142	12.0000
FFFF	chr1:84720702-84720925(-)$1	223	27	31	12.0000
e444	chr6:145165210-145165428(-)$1	218	34	38	12.0000
ttdd	chr2:44839475-44839711(-)$1	236	124	128	12.0000
:::d	chr5:122903601-122903837(-)$1	236	16	20	12.0000
tttf	chr16:8857356-8857584(+)$1	228	40	44	12.0000
ffff	chr9:69855136-69855367(+)$1	231	60	64	12.0000
GGGG	chr3:16113919-16114152(+)$1	233	84	88	12.0000
mggg	chrX:35966352-35966580(+)$1	228	91	95	12.0000
::cc	chr7:97593828-97594070(+)$1	242	17	21	12.0000
:JJJ	chr11:86313209-86313440(-)$1	231	139	143	12.0000
gggg	chr15:81481626-81481851(+)$1	225	121	125	12.0000
GGGG	chr15:36700551-36700780(-)$1	229	46	50	12.0000
::::	chr17:46306162-46306407(+)$1	245	141	145	12.0000
c::f	chr17:66184336-66184569(+)$1	233	79	83	12.0000
II{C	chr11:52055988-52056214(+)$1	226	72	76	12.0000
:ddd	chr1:82891781-82892062(+)$1	281	89	93	12.0000
oooe	chr4:82451939-82452170(-)$1	231	59	63	12.0000
:CCC	chr11:5179227-5179458(-)$1	231	0	4	12.0000
[ddd	chr18:36448332-36448558(+)$1	226	104	108	12.0000
mmmd	chr4:123027679-123027907(-)$1	228	38	42	12.0000
hhhh	chr14:35559193-35559426(+)$1	233	100	104	12.0000
nnnc	chr9:88348261-88348588(-)$1	327	223	227	12.0000
::::	chr5:130611454-130611683(+)$1	229	96	100	12.0000
::::	chr3:29878922-29879152(-)$1	230	115	119	12.0000
pppb	chr16:94915011-94915237(+)$1	226	122	126	12.0000
____	chr11:86080625-86080850(-)$1	225	196	200	12.0000
iiii	chr6:87793683-87793904(-)$1	221	85	89	12.0000
:::c	chr16:33499010-33499235(+)$1	225	96	100	12.0000
D:::	chr9:88345990-88346229(-)$1	239	12	16	12.0000
gggg	chr2:6463366-6463597(-)$1	231	54	58	12.0000
wwbb	chr13:34993398-34993627(+)$1	229	66	70	12.0000
"""f	chrX:54639360-54639587(-)$1	227	162	166	12.0000
fffq	chr6:21923766-21923996(+)$1	230	109	113	12.0000
hhhh	chr3:65752580-65752811(-)$1	231	10	14	12.0000
%%%e	chrX:148462268-148462514(+)$1	246	74	78	12.0000
FFFF	chr11:65520423-65520659(-)$1	236	25	29	12.0000
MMMC	chr9:82762535-82762760(-)$1	225	24	28	12.0000
====	chr8:129114707-129114938(-)$1	231	44	48	12.0000
CKKF	chr4:102835851-102836093(+)$1	242	31	35	12.0000
ssdd	chr7:90019456-90019684(+)$1	228	79	83	12.0000
====	chr1:180258222-180258452(-)$1	230	161	165	12.0000
gggg	chr2:37229727-37229971(-)$1	244	74	78	12.0000
tttt	chrX:109748206-109748451(+)$1	245	58	62	12.0000
h::c	chr2:37230520-37230745(-)$1	225	74	78	12.0000
dddd	chrX:12868828-12869057(+)$1	229	89	93	12.0000
IIII	chr17:10401405-10401656(-)$1	251	47	51	12.0000
IIII	chrX:91521246-91521474(+)$1	228	9	13	12.0000
2fff	chr7:118215613-118215844(-)$1	231	127	131	12.0000
>>>>	chr6:35459796-35460026(-)$1	230	107	111	12.0000
reee	chr2:49405976-49406234(+)$1	258	165	169	12.0000
QQQQ	chr8:82298932-82299160(+)$1	228	9	13	12.0000
#ggg	chr8:24052548-24052786(+)$1	238	54	58	12.0000
GGGG	chrX:138753901-138754136(-)$1	235	16	20	12.0000
gggg	chr12:35804338-35804576(+)$1	238	57	61	12.0000
:::g	chr14:79982095-79982320(+)$1	225	90	94	12.0000

#DB
((((	chr11:87895754-87896007(+)$1	1	59	63	12.0000
(...	chr18:73798874-73799096(-)$1	1	68	72	12.0000
.)))	chr18:35776627-35776853(+)$1	1	196	200	12.0000
....	chr2:72775891-72776129(-)$1	1	145	149	12.0000
..))	chr15:38421313-38421535(-)$1	1	189	193	12.0000
...)	chr5:147104129-147104368(+)$1	1	192	196	12.0000
..((	chr4:132753888-132754116(+)$1	1	36	40	12.0000
....	chr8:92771497-92771747(-)$1	1	96	100	12.0000
..((	chr7:120050022-120050247(+)$1	1	38	42	12.0000
...(	chr3:22114046-22114270(+)$1	1	7	11	12.0000
..((	chr15:98663428-98663662(-)$1	1	28	32	12.0000
.(((	chr4:33332762-33332988(-)$1	1	54	58	12.0000
((((	chr16:32019548-32019771(-)$1	1	119	123	12.0000
.(((	chr13:105628242-105628467(+)$1	1	106	110	12.0000
....	chr10:117252013-117252238(-)$1	1	24	28	12.0000
((((	chr10:127513942-127514167(+)$1	1	69	73	12.0000
...(	chr13:17974052-17974279(-)$1	1	4	8	12.0000
....	chr1:56851027-56851286(-)$1	1	39	43	12.0000
((.(	chr11:97021391-97021615(-)$1	1	17	21	12.0000
..))	chr16:30313224-30313475(-)$1	1	147	151	12.0000
))))	chr4:109126178-109126410(-)$1	1	64	68	12.0000
((.(	chrX:11613883-11614110(-)$1	1	101	105	12.0000
).))	chr8:131248001-131248227(+)$1	1	96	100	12.0000
(.((	chr14:120828844-120829072(+)$1	1	158	162	12.0000
..((	chr2:6466125-6466347(-)$1	1	11	15	12.0000
..((	chr1:138526107-138526333(+)$1	1	138	142	12.0000
((((	chr1:84720702-84720925(-)$1	1	27	31	12.0000
)...	chr6:145165210-145165428(-)$1	1	34	38	12.0000
..))	chr2:44839475-44839711(-)$1	1	124	128	12.0000
...(	chr5:122903601-122903837(-)$1	1	16	20	12.0000
...)	chr16:8857356-8857584(+)$1	1	40	44	12.0000
((((	chr9:69855136-69855367(+)$1	1	60	64	12.0000
))))	chr3:16113919-16114152(+)$1	1	84	88	12.0000
.)))	chrX:35966352-35966580(+)$1	1	91	95	12.0000
..((	chr7:97593828-97594070(+)$1	1	17	21	12.0000
.)))	chr11:86313209-86313440(-)$1	1	139	143	12.0000
))))	chr15:81481626-81481851(+)$1	1	121	125	12.0000
((((	chr15:36700551-36700780(-)$1	1	46	50	12.0000
....	chr17:46306162-46306407(+)$1	1	141	145	12.0000
)..(	chr17:66184336-66184569(+)$1	1	79	83	12.0000
((.(	chr11:52055988-52056214(+)$1	1	72	76	12.0000
.(((	chr1:82891781-82892062(+)$1	1	89	93	12.0000
...)	chr4:82451939-82452170(-)$1	1	59	63	12.0000
.(((	chr11:5179227-5179458(-)$1	1	0	4	12.0000
.(((	chr18:36448332-36448558(+)$1	1	104	108	12.0000
...)	chr4:123027679-123027907(-)$1	1	38	42	12.0000
((((	chr14:35559193-35559426(+)$1	1	100	104	12.0000
...)	chr9:88348261-88348588(-)$1	1	223	227	12.0000
....	chr5:130611454-130611683(+)$1	1	96	100	12.0000
....	chr3:29878922-29879152(-)$1	1	115	119	12.0000
...)	chr16:94915011-94915237(+)$1	1	122	126	12.0000
....	chr11:86080625-86080850(-)$1	1	196	200	12.0000
))))	chr6:87793683-87793904(-)$1	1	85	89	12.0000
...(	chr16:33499010-33499235(+)$1	1	96	100	12.0000
(...	chr9:88345990-88346229(-)$1	1	12	16	12.0000
((((	chr2:6463366-6463597(-)$1	1	54	58	12.0000
..))	chr13:34993398-34993627(+)$1	1	66	70	12.0000
...(	chrX:54639360-54639587(-)$1	1	162	166	12.0000
(((.	chr6:21923766-21923996(+)$1	1	109	113	12.0000
((((	chr3:65752580-65752811(-)$1	1	10	14	12.0000
...(	chrX:148462268-148462514(+)$1	1	74	78	12.0000
((((	chr11:65520423-65520659(-)$1	1	25	29	12.0000
...(	chr9:82762535-82762760(-)$1	1	24	28	12.0000
((((	chr8:129114707-129114938(-)$1	1	44	48	12.0000
(..(	chr4:102835851-102836093(+)$1	1	31	35	12.0000
..))	chr7:90019456-90019684(+)$1	1	79	83	12.0000
))))	chr1:180258222-180258452(-)$1	1	161	165	12.0000
((((	chr2:37229727-37229971(-)$1	1	74	78	12.0000
....	chrX:109748206-109748451(+)$1	1	58	62	12.0000
)..(	chr2:37230520-37230745(-)$1	1	74	78	12.0000
))))	chrX:12868828-12869057(+)$1	1	89	93	12.0000
((((	chr17:10401405-10401656(-)$1	1	47	51	12.0000
((((	chrX:91521246-91521474(+)$1	1	9	13	12.0000
.)))	chr7:118215613-118215844(-)$1	1	127	131	12.0000
....	chr6:35459796-35460026(-)$1	1	107	111	12.0000
.)))	chr2:49405976-49406234(+)$1	1	165	169	12.0000
....	chr8:82298932-82299160(+)$1	1	9	13	12.0000
.(((	chr8:24052548-24052786(+)$1	1	54	58	12.0000
((((	chrX:138753901-138754136(-)$1	1	16	20	12.0000
))))	chr12:35804338-35804576(+)$1	1	57	61	12.0000
...(	chr14:79982095-79982320(+)$1	1	90	94	12.0000

#PSSM
A : 0.96	a : 0.03	
A : 0.96	a : 0.03	
U : 0.96	u : 0.03	
G : 0.97	g : 0.02	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_CDS_m1_run1.nuc.txt

#NT
CUGGAA	chr16:84813236-84813454(+)$1	218	96	102	10.3015
CUGAAA	chrM:13162-13379(-)$1	217	155	161	13.9523
CUGAAG	chr2:162900125-162900344(+)$1	219	32	38	11.0158
CUGUAA	chrM:3910-4126(+)$1	216	52	58	10.2222
CUGAAA	chr2:74706289-74706502(+)$1	213	31	37	13.9523
CUGAAA	chr17:46378631-46378847(+)$1	216	86	92	13.9523
CUGAAG	chr6:88456045-88456255(-)$1	210	52	58	11.0158
CUGACA	chr7:52382318-52382536(-)$1	218	67	73	10.4603
CUGAAG	chr7:16913099-16913316(-)$1	217	7	13	11.0158
CUGAAU	chr15:44252176-44252387(-)$1	211	184	190	10.4603
CUGACA	chr17:15087465-15087680(-)$1	215	0	6	10.4603
CUGCAA	chr12:56192156-56192369(+)$1	213	81	87	10.4603
cugaga	chr11:86539775-86539993(-)$1	218	114	120	10.5396
CUGAAA	chr14:25282711-25282928(-)$1	217	133	139	13.9523
CUGAAA	chr16:32615180-32615398(+)$1	218	164	170	13.9523
CUGACA	chr13:45008526-45008736(+)$1	210	170	176	10.4603
CUGAAA	chr11:78117993-78118217(+)$1	224	26	32	13.9523
CUGAGA	chr2:167131167-167131385(-)$1	218	147	153	10.5396
CUGCAA	chr17:32284192-32284406(-)$1	214	133	139	10.4603
CUGCAA	chr14:31985242-31985460(-)$1	218	207	213	10.4603
GUGAAA	chr6:108799288-108799506(+)$1	218	31	37	9.9841
CUGAAG	chr7:88183074-88183292(+)$1	218	53	59	11.0158
GUGAAA	chr8:87434706-87434925(+)$1	219	189	195	9.9841
GUGAAA	chr4:146992443-146992661(-)$1	218	42	48	9.9841
CUGAAA	chr5:97515927-97516149(+)$1	222	2	8	13.9523
CUGACA	chr7:109608772-109608988(+)$1	216	8	14	10.4603
UUGAAA	chr9:43962262-43962494(-)$1	232	26	32	10.0634
UUGAAA	chr2:119758197-119758413(+)$1	216	29	35	10.0634
CUGAAA	chr7:36387463-36387679(+)$1	216	15	21	13.9523
CUGAAA	chr9:122888609-122888831(+)$1	222	189	195	13.9523
CUGAGA	chr1:183027167-183027381(-)$1	214	72	78	10.5396
CUGCAA	chr11:109334611-109334829(+)$1	218	17	23	10.4603
CUGGAA	chr5:31236170-31236388(-)$1	218	169	175	10.3015
CUGUAA	chr10:117227458-117227676(-)$1	218	7	13	10.2222
CUGAGA	chr19:45842183-45842392(-)$1	209	153	159	10.5396
CUGACA	chr9:58109421-58109634(+)$1	213	11	17	10.4603
CUGAGA	chr13:55397315-55397526(+)$1	211	43	49	10.5396
CUGAAG	chr12:103861490-103861713(-)$1	223	42	48	11.0158
CUGAAA	chr2:25193626-25193843(+)$1	217	183	189	13.9523
CUGUAA	chr11:102861457-102861673(-)$1	216	177	183	10.2222
CUGAAC	chr17:32280330-32280546(-)$1	216	209	215	10.4603
CUGAAG	chr4:118805944-118806155(+)$1	211	14	20	11.0158
CUGAAA	chr2:129033340-129033558(+)$1	218	26	32	13.9523
CUGGAA	chr4:41664351-41664575(-)$1	224	135	141	10.3015
CUGAGA	chr18:34509232-34509449(-)$1	217	38	44	10.5396
CUGAAC	chr8:108734698-108734913(-)$1	215	38	44	10.4603
CUGAAC	chr9:4308780-4308999(-)$1	219	72	78	10.4603
CUGCAA	chr9:82800544-82800764(-)$1	220	119	125	10.4603
CUGAGA	chr4:32788579-32788798(+)$1	219	129	135	10.5396
CUGAAG	chrX:98278440-98278659(-)$1	219	85	91	11.0158
CUGAAU	chr9:100846209-100846419(-)$1	210	145	151	10.4603
CUGAAU	chr10:127523062-127523274(+)$1	212	107	113	10.4603
UUGAAA	chr8:26944154-26944377(-)$1	223	14	20	10.0634
CUGCAA	chr10:62340923-62341140(-)$1	217	150	156	10.4603
UUGAAA	chr10:62482146-62482358(-)$1	212	101	107	10.0634
CUGAAG	chr1:60204715-60204925(+)$1	210	73	79	11.0158
CUGGAA	chr16:18280275-18280499(-)$1	224	54	60	10.3015
CUGAAG	chr4:123060486-123060697(-)$1	211	128	134	11.0158
CUGAAG	chr1:57445436-57445648(-)$1	212	76	82	11.0158
GUGAAA	chr3:88847383-88847600(+)$1	217	166	172	9.9841
CUGAAA	chr13:111188812-111189032(+)$1	220	6	12	13.9523
CUGACA	chr9:21733520-21733730(+)$1	210	176	182	10.4603

#otherMatches

#Struct PSSM
::::::	chr2:23052357-23052569(+)$1	212	77	83	10.0634
gggggg	chr16:84813236-84813454(+)$1	218	96	102	10.3015
ddddnn	chrM:13162-13379(-)$1	217	155	161	13.9523
f[a[cc	chr2:162900125-162900344(+)$1	219	32	38	11.0158
!cccww	chrM:3910-4126(+)$1	216	52	58	10.2222
eeee22	chr2:74706289-74706502(+)$1	213	31	37	13.9523
ccssss	chr17:46378631-46378847(+)$1	216	86	92	13.9523
ff4444	chr6:88456045-88456255(-)$1	210	52	58	11.0158
mmmccc	chr7:52382318-52382536(-)$1	218	67	73	10.4603
:EEEEE	chr7:16913099-16913316(-)$1	217	7	13	11.0158
bppppp	chr15:44252176-44252387(-)$1	211	184	190	10.4603
:::EEE	chr17:15087465-15087680(-)$1	215	0	6	10.4603
fppppp	chr12:56192156-56192369(+)$1	213	81	87	10.4603
999999	chr11:86539775-86539993(-)$1	218	114	120	10.5396
ddd::E	chr14:25282711-25282928(-)$1	217	133	139	13.9523
ggggg]	chr16:32615180-32615398(+)$1	218	164	170	13.9523
iiiiii	chr13:45008526-45008736(+)$1	210	170	176	10.4603
ddd%%%	chr11:78117993-78118217(+)$1	224	26	32	13.9523
ssssss	chr2:167131167-167131385(-)$1	218	147	153	10.5396
mmbb22	chr17:32284192-32284406(-)$1	214	133	139	10.4603
ZCCC::	chr14:31985242-31985460(-)$1	218	207	213	10.4603
[a"""e	chr6:108799288-108799506(+)$1	218	31	37	9.9841
eepppp	chr7:88183074-88183292(+)$1	218	53	59	11.0158
CCC~~~	chr8:87434706-87434925(+)$1	219	189	195	9.9841
dddd&&	chr4:146992443-146992661(-)$1	218	42	48	9.9841
eee!!d	chr5:97515927-97516149(+)$1	222	2	8	13.9523
pppddd	chr7:109608772-109608988(+)$1	216	8	14	10.4603
meeeee	chr9:43962262-43962494(-)$1	232	26	32	10.0634
GGGG:d	chr2:119758197-119758413(+)$1	216	29	35	10.0634
nndddd	chr7:36387463-36387679(+)$1	216	15	21	13.9523
ffffqq	chr9:122888609-122888831(+)$1	222	189	195	13.9523
eeeee[	chr1:183027167-183027381(-)$1	214	72	78	10.5396
mmbb::	chr11:109334611-109334829(+)$1	218	17	23	10.4603
iiiiii	chr5:31236170-31236388(-)$1	218	169	175	10.3015
PPPPPF	chr10:117227458-117227676(-)$1	218	7	13	10.2222
ccc]a]	chr19:45842183-45842392(-)$1	209	153	159	10.5396
::::::	chr9:58109421-58109634(+)$1	213	11	17	10.4603
ccc]bb	chr13:55397315-55397526(+)$1	211	43	49	10.5396
ccc]ee	chr12:103861490-103861713(-)$1	223	42	48	11.0158
ccIIII	chr2:25193626-25193843(+)$1	217	183	189	13.9523
hheeee	chr11:102861457-102861673(-)$1	216	177	183	10.2222
::::::	chr17:32280330-32280546(-)$1	216	209	215	10.4603
ccnnnn	chr4:118805944-118806155(+)$1	211	14	20	11.0158
ff####	chr2:129033340-129033558(+)$1	218	26	32	13.9523
44bb]e	chr4:41664351-41664575(-)$1	224	135	141	10.3015
ee::::	chr18:34509232-34509449(-)$1	217	38	44	10.5396
c]dddd	chr8:108734698-108734913(-)$1	215	38	44	10.4603
ee6666	chr9:4308780-4308999(-)$1	219	72	78	10.4603
dddd]i	chr9:82800544-82800764(-)$1	220	119	125	10.4603
eeeppp	chr4:32788579-32788798(+)$1	219	129	135	10.5396
DDD::d	chrX:98278440-98278659(-)$1	219	85	91	11.0158
ii]eee	chr9:100846209-100846419(-)$1	210	145	151	10.4603
eeeeel	chr10:127523062-127523274(+)$1	212	107	113	10.4603
::::::	chr8:26944154-26944377(-)$1	223	14	20	10.0634
!dddd#	chr10:62340923-62341140(-)$1	217	150	156	10.4603
dddd22	chr10:62482146-62482358(-)$1	212	101	107	10.0634
EEE::d	chr1:60204715-60204925(+)$1	210	73	79	11.0158
eee22c	chr16:18280275-18280499(-)$1	224	54	60	10.3015
dd!!dd	chr4:123060486-123060697(-)$1	211	128	134	11.0158
ddd[bb	chr1:57445436-57445648(-)$1	212	76	82	11.0158
}DDDD~	chr3:88847383-88847600(+)$1	217	166	172	9.9841
:CCC{D	chr13:111188812-111189032(+)$1	220	6	12	13.9523
ebb:::	chr9:21733520-21733730(+)$1	210	176	182	10.4603

#DB
......	chr2:23052357-23052569(+)$1	1	77	83	10.0634
((((((	chr16:84813236-84813454(+)$1	1	96	102	10.3015
((((..	chrM:13162-13379(-)$1	1	155	161	13.9523
(.(.((	chr2:162900125-162900344(+)$1	1	32	38	11.0158
.(((..	chrM:3910-4126(+)$1	1	52	58	10.2222
))))..	chr2:74706289-74706502(+)$1	1	31	37	13.9523
((....	chr17:46378631-46378847(+)$1	1	86	92	13.9523
))....	chr6:88456045-88456255(-)$1	1	52	58	11.0158
...)))	chr7:52382318-52382536(-)$1	1	67	73	10.4603
.(((((	chr7:16913099-16913316(-)$1	1	7	13	11.0158
(.....	chr15:44252176-44252387(-)$1	1	184	190	10.4603
...(((	chr17:15087465-15087680(-)$1	1	0	6	10.4603
(.....	chr12:56192156-56192369(+)$1	1	81	87	10.4603
......	chr11:86539775-86539993(-)$1	1	114	120	10.5396
)))..(	chr14:25282711-25282928(-)$1	1	133	139	13.9523
))))).	chr16:32615180-32615398(+)$1	1	164	170	13.9523
))))))	chr13:45008526-45008736(+)$1	1	170	176	10.4603
(((...	chr11:78117993-78118217(+)$1	1	26	32	13.9523
......	chr2:167131167-167131385(-)$1	1	147	153	10.5396
..))..	chr17:32284192-32284406(-)$1	1	133	139	10.4603
.)))..	chr14:31985242-31985460(-)$1	1	207	213	10.4603
.(...(	chr6:108799288-108799506(+)$1	1	31	37	9.9841
((....	chr7:88183074-88183292(+)$1	1	53	59	11.0158
)))...	chr8:87434706-87434925(+)$1	1	189	195	9.9841
((((..	chr4:146992443-146992661(-)$1	1	42	48	9.9841
(((..(	chr5:97515927-97516149(+)$1	1	2	8	13.9523
...)))	chr7:109608772-109608988(+)$1	1	8	14	10.4603
.)))))	chr9:43962262-43962494(-)$1	1	26	32	10.0634
((((.(	chr2:119758197-119758413(+)$1	1	29	35	10.0634
..))))	chr7:36387463-36387679(+)$1	1	15	21	13.9523
((((..	chr9:122888609-122888831(+)$1	1	189	195	13.9523
(((((.	chr1:183027167-183027381(-)$1	1	72	78	10.5396
..))..	chr11:109334611-109334829(+)$1	1	17	23	10.4603
((((((	chr5:31236170-31236388(-)$1	1	169	175	10.3015
.....(	chr10:117227458-117227676(-)$1	1	7	13	10.2222
))).).	chr19:45842183-45842392(-)$1	1	153	159	10.5396
......	chr9:58109421-58109634(+)$1	1	11	17	10.4603
))).))	chr13:55397315-55397526(+)$1	1	43	49	10.5396
))).))	chr12:103861490-103861713(-)$1	1	42	48	11.0158
))))))	chr2:25193626-25193843(+)$1	1	183	189	13.9523
((((((	chr11:102861457-102861673(-)$1	1	177	183	10.2222
......	chr17:32280330-32280546(-)$1	1	209	215	10.4603
((....	chr4:118805944-118806155(+)$1	1	14	20	11.0158
((....	chr2:129033340-129033558(+)$1	1	26	32	13.9523
..)).)	chr4:41664351-41664575(-)$1	1	135	141	10.3015
))....	chr18:34509232-34509449(-)$1	1	38	44	10.5396
).))))	chr8:108734698-108734913(-)$1	1	38	44	10.4603
))....	chr9:4308780-4308999(-)$1	1	72	78	10.4603
)))).)	chr9:82800544-82800764(-)$1	1	119	125	10.4603
(((...	chr4:32788579-32788798(+)$1	1	129	135	10.5396
(((..(	chrX:98278440-98278659(-)$1	1	85	91	11.0158
)).)))	chr9:100846209-100846419(-)$1	1	145	151	10.4603
(((((.	chr10:127523062-127523274(+)$1	1	107	113	10.4603
......	chr8:26944154-26944377(-)$1	1	14	20	10.0634
.((((.	chr10:62340923-62341140(-)$1	1	150	156	10.4603
))))..	chr10:62482146-62482358(-)$1	1	101	107	10.0634
(((..(	chr1:60204715-60204925(+)$1	1	73	79	11.0158
)))..)	chr16:18280275-18280499(-)$1	1	54	60	10.3015
((..((	chr4:123060486-123060697(-)$1	1	128	134	11.0158
(((.((	chr1:57445436-57445648(-)$1	1	76	82	11.0158
.)))).	chr3:88847383-88847600(+)$1	1	166	172	9.9841
.(((.(	chr13:111188812-111189032(+)$1	1	6	12	13.9523
)))...	chr9:21733520-21733730(+)$1	1	176	182	10.4603

#PSSM
C : 0.84	U : 0.07	G : 0.06	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
A : 0.77	C : 0.09	G : 0.06	U : 0.04	a : 0.01	
A : 0.79	C : 0.09	G : 0.09	g : 0.01	
A : 0.73	G : 0.15	U : 0.04	C : 0.04	a : 0.01	

#score	701.777777777777
#seq	63
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_UTR_m2_run2.nuc.txt

#NT
UUAUUUAU	chr7:74377078-74377326(-)$1	248	29	37	16.4626
UUUUUUUU	chr18:36451715-36451953(+)$1	238	173	181	16.0149
UUAUUUAU	chr12:76554261-76554490(-)$1	229	104	112	16.4626
uuauuuau	chr2:33262353-33262587(-)$1	234	111	119	16.4626
uuuuuuuu	chr10:127513942-127514167(+)$1	225	177	185	16.0149
UUAUUUUU	chr7:97593525-97593760(+)$1	235	63	71	20.0447
UUGUUUUU	chrX:91522255-91522487(+)$1	232	44	52	15.8656
UCAUUUUU	chr11:87863094-87863336(+)$1	242	81	89	15.7910
UCAUUUUU	chr11:87862980-87863229(+)$1	249	195	203	15.7910
UUAUUUUU	chr1:138521479-138521709(+)$1	230	100	108	20.0447
UUGUUUUU	chr2:6528836-6529062(-)$1	226	11	19	15.8656
UUAUUUUU	chr16:33499010-33499235(+)$1	225	79	87	20.0447
UUAUUUUU	chr19:29679867-29680092(+)$1	225	62	70	20.0447
GUAUUUUU	chr15:25293611-25293844(-)$1	233	98	106	15.9402
AUAUUUUU	chrX:35772849-35773074(-)$1	225	63	71	16.4626
AUAUUUUU	chr1:82891781-82892062(+)$1	281	138	146	16.4626
uucuuuuu	chr13:29041759-29041989(-)$1	230	6	14	15.9402
UUAUUUUC	chr7:133635263-133635494(-)$1	231	105	113	15.4179
UCAUUUUU	chr12:83013571-83013797(+)$1	226	49	57	15.7910
UUAUUAUU	chrX:109748547-109748771(+)$1	224	67	75	15.4925
UUAUUUAU	chr5:108931770-108931998(+)$1	228	81	89	16.4626
UUAUUUUU	chr4:53578357-53578583(+)$1	226	127	135	20.0447
UUAUCUUU	chr7:37558208-37558437(+)$1	229	19	27	15.4925
UUAUUAUU	chr1:88563032-88563261(-)$1	229	28	36	15.4925
UUACUUUU	chr4:126707232-126707468(+)$1	236	169	177	15.4179
UGAuuuuu	chr1:180259280-180259563(-)$1	283	217	225	15.6417
AUAUUUUU	chr9:44614487-44614717(-)$1	230	82	90	16.4626
UUAUUUGU	chr8:24052548-24052786(+)$1	238	93	101	16.0895
UUAUUUAU	chr3:151897367-151897621(+)$1	254	103	111	16.4626
uuauuuuu	chr18:61747339-61747583(+)$1	244	71	79	20.0447
UUAUUUUU	chr18:73751490-73751719(+)$1	229	82	90	20.0447
UUUUUUUU	chr11:87864370-87864712(+)$1	342	284	292	16.0149
UUAUUUUU	chr11:107548330-107548552(+)$1	222	122	130	20.0447
UUAUUUUU	chr12:8756941-8757168(+)$1	227	49	57	20.0447
UCauuuuu	chr11:31833719-31833946(+)$1	227	31	39	15.7910
UGAUUUUU	chr3:119423005-119423232(-)$1	227	69	77	15.6417
AUAUUUUU	chr10:114727439-114727663(-)$1	224	71	79	16.4626
UUAUUUAU	chr5:122906304-122906534(-)$1	230	72	80	16.4626
UUAUUAUU	chr7:74378497-74378746(-)$1	249	48	56	15.4925
uuauauuu	chr18:35776627-35776853(+)$1	226	163	171	15.4925
UUAUUUAU	chr15:38421909-38422134(-)$1	225	7	15	16.4626
UUAUUUGU	chr4:123413438-123413667(-)$1	229	81	89	16.0895
UUAUUUCU	chr6:113102460-113102688(+)$1	228	181	189	16.1641
UUAUUUUG	chr11:31833535-31833761(+)$1	226	31	39	15.3432
UUAUGUUU	chr15:98373124-98373359(-)$1	235	179	187	15.6417
AUAUUUUU	chrX:91519296-91519528(+)$1	232	115	123	16.4626
UUCUUUUU	chr12:56969085-56969315(+)$1	230	41	49	15.9402
UUAAUUUU	chr10:117252138-117252363(-)$1	225	38	46	15.5671
UUAUGuuu	chr11:78382089-78382317(-)$1	228	204	212	15.6417
UUCUUUUU	chr5:52541366-52541591(-)$1	225	199	207	15.9402
UUAUUUCU	chr3:60430835-60431063(+)$1	228	132	140	16.1641
CUAUUUUU	chr11:31835445-31835671(+)$1	226	2	10	16.0149
UUAUUUCU	chr9:88348493-88348734(-)$1	241	91	99	16.1641
UUUUUUUU	chr17:10399767-10399994(-)$1	227	27	35	16.0149
AUAUUUUU	chr11:102167205-102167429(-)$1	224	77	85	16.4626
UUAUUUUU	chr6:87793213-87793435(-)$1	222	122	130	20.0447
AUAUUUUU	chr12:50487660-50487881(+)$1	221	193	201	16.4626
UUAUUUUC	chrX:65969320-65969557(+)$1	237	36	44	15.4179
UUAUUUUU	chr18:36450705-36450934(+)$1	229	160	168	20.0447
AUAUUUUU	chr13:9170423-9170651(+)$1	228	54	62	16.4626
UUAUUUUU	chr10:79843138-79843367(-)$1	229	22	30	20.0447
UUAAUUUU	chr11:53232604-53232828(+)$1	224	127	135	15.5671
uuauuuuu	chr7:66560434-66560689(+)$1	255	79	87	20.0447
CUAUUUUU	chrX:91521942-91522189(+)$1	247	106	114	16.0149
UUAAUUUU	chr2:37229878-37230139(-)$1	261	56	64	15.5671
UUAUUUUU	chr9:7206900-7207138(+)$1	238	169	177	20.0447

#otherMatches

#Struct PSSM
fffeeeee	chr3:102860874-102861105(+)$1	231	131	139	15.6417
cnnnnncc	chr7:74377078-74377326(-)$1	248	29	37	16.4626
GGYYEEEE	chr18:36451715-36451953(+)$1	238	173	181	16.0149
:FFFFFF{	chr12:76554261-76554490(-)$1	229	104	112	16.4626
c:::::::	chr2:33262353-33262587(-)$1	234	111	119	16.4626
[iiiiiii	chr10:127513942-127514167(+)$1	225	177	185	16.0149
eeeee22e	chr7:97593525-97593760(+)$1	235	63	71	20.0447
E{BB{DDD	chrX:91522255-91522487(+)$1	232	44	52	15.8656
::::::::	chr11:87863094-87863336(+)$1	242	81	89	15.7910
::::::::	chr11:87862980-87863229(+)$1	249	195	203	15.7910
dd[fffff	chr1:138521479-138521709(+)$1	230	100	108	20.0447
dddd[fff	chr2:6528836-6529062(-)$1	226	11	19	15.8656
]eeeee::	chr16:33499010-33499235(+)$1	225	79	87	20.0447
dd$$$$$h	chr19:29679867-29680092(+)$1	225	62	70	20.0447
dnnnnndd	chr15:25293611-25293844(-)$1	233	98	106	15.9402
::::::::	chrX:35772849-35773074(-)$1	225	63	71	16.4626
dd::iiii	chr1:82891781-82892062(+)$1	281	138	146	16.4626
JJJJJJ::	chr13:29041759-29041989(-)$1	230	6	14	15.9402
nngggggg	chr7:133635263-133635494(-)$1	231	105	113	15.4179
dddd::::	chr12:83013571-83013797(+)$1	226	49	57	15.7910
:::ggggg	chrX:109748547-109748771(+)$1	224	67	75	15.4925
eeee]===	chr5:108931770-108931998(+)$1	228	81	89	16.4626
b]eeeee:	chr4:53578357-53578583(+)$1	226	127	135	20.0447
GGGGLLLD	chr7:37558208-37558437(+)$1	229	19	27	15.4925
GG{FFFFF	chr1:88563032-88563261(-)$1	229	28	36	15.4925
::::::::	chr4:126707232-126707468(+)$1	236	169	177	15.4179
YFFFFFF}	chr1:180259280-180259563(-)$1	283	217	225	15.6417
hhhhhh33	chr9:44614487-44614717(-)$1	230	82	90	16.4626
iiiiiiii	chr8:24052548-24052786(+)$1	238	93	101	16.0895
hhh:::::	chr3:151897367-151897621(+)$1	254	103	111	16.4626
::::::::	chr18:61747339-61747583(+)$1	244	71	79	20.0447
eeee::::	chr18:73751490-73751719(+)$1	229	82	90	20.0447
pppppppe	chr11:87864370-87864712(+)$1	342	284	292	16.0149
hhheeeee	chr11:107548330-107548552(+)$1	222	122	130	20.0447
ff[bbfff	chr12:8756941-8757168(+)$1	227	49	57	20.0447
::::::::	chr11:31833719-31833946(+)$1	227	31	39	15.7910
eee::::f	chr3:119423005-119423232(-)$1	227	69	77	15.6417
fffff[ff	chr10:114727439-114727663(-)$1	224	71	79	16.4626
JJJJJ:::	chr5:122906304-122906534(-)$1	230	72	80	16.4626
NNNNHHHH	chr7:74378497-74378746(-)$1	249	48	56	15.4925
ooooooee	chr18:35776627-35776853(+)$1	226	163	171	15.4925
iiiiii[d	chr15:38421909-38422134(-)$1	225	7	15	16.4626
$$======	chr4:123413438-123413667(-)$1	229	81	89	16.0895
C?????JJ	chr6:113102460-113102688(+)$1	228	181	189	16.1641
pppppppd	chr11:31833535-31833761(+)$1	226	31	39	15.3432
hhhh]ccc	chr15:98373124-98373359(-)$1	235	179	187	15.6417
eeee::::	chrX:91519296-91519528(+)$1	232	115	123	16.4626
ff22ffff	chr12:56969085-56969315(+)$1	230	41	49	15.9402
ssssssss	chr10:117252138-117252363(-)$1	225	38	46	15.5671
YYHHHHHH	chr11:78382089-78382317(-)$1	228	204	212	15.6417
::::::::	chr5:52541366-52541591(-)$1	225	199	207	15.9402
::::::ff	chr3:60430835-60431063(+)$1	228	132	140	16.1641
::::FFFF	chr11:31835445-31835671(+)$1	226	2	10	16.0149
:::::ddd	chr9:88348493-88348734(-)$1	241	91	99	16.1641
::::::HH	chr17:10399767-10399994(-)$1	227	27	35	16.0149
gggJJJJJ	chr11:102167205-102167429(-)$1	224	77	85	16.4626
[ccctttt	chr6:87793213-87793435(-)$1	222	122	130	20.0447
c]dddd22	chr12:50487660-50487881(+)$1	221	193	201	16.4626
gggppppp	chrX:65969320-65969557(+)$1	237	36	44	15.4179
""cccooo	chr18:36450705-36450934(+)$1	229	160	168	20.0447
ee]dddd]	chr13:9170423-9170651(+)$1	228	54	62	16.4626
++++++++	chr10:79843138-79843367(-)$1	229	22	30	20.0447
qqqqgggg	chr11:53232604-53232828(+)$1	224	127	135	15.5671
:::IIIII	chr7:66560434-66560689(+)$1	255	79	87	20.0447
mmmmgggg	chrX:91521942-91522189(+)$1	247	106	114	16.0149
:::::iii	chr2:37229878-37230139(-)$1	261	56	64	15.5671
ffffmmmm	chr9:7206900-7207138(+)$1	238	169	177	20.0447

#DB
)))(((((	chr3:102860874-102861105(+)$1	1	131	139	15.6417
(.....))	chr7:74377078-74377326(-)$1	1	29	37	16.4626
))..))))	chr18:36451715-36451953(+)$1	1	173	181	16.0149
.((((((.	chr12:76554261-76554490(-)$1	1	104	112	16.4626
).......	chr2:33262353-33262587(-)$1	1	111	119	16.4626
.(((((((	chr10:127513942-127514167(+)$1	1	177	185	16.0149
)))))..)	chr7:97593525-97593760(+)$1	1	63	71	20.0447
(.((.(((	chrX:91522255-91522487(+)$1	1	44	52	15.8656
........	chr11:87863094-87863336(+)$1	1	81	89	15.7910
........	chr11:87862980-87863229(+)$1	1	195	203	15.7910
((.(((((	chr1:138521479-138521709(+)$1	1	100	108	20.0447
((((.(((	chr2:6528836-6529062(-)$1	1	11	19	15.8656
.)))))..	chr16:33499010-33499235(+)$1	1	79	87	20.0447
((.....(	chr19:29679867-29680092(+)$1	1	62	70	20.0447
(.....))	chr15:25293611-25293844(-)$1	1	98	106	15.9402
........	chrX:35772849-35773074(-)$1	1	63	71	16.4626
))..((((	chr1:82891781-82892062(+)$1	1	138	146	16.4626
((((((..	chr13:29041759-29041989(-)$1	1	6	14	15.9402
..))))))	chr7:133635263-133635494(-)$1	1	105	113	15.4179
))))....	chr12:83013571-83013797(+)$1	1	49	57	15.7910
...(((((	chrX:109748547-109748771(+)$1	1	67	75	15.4925
)))).)))	chr5:108931770-108931998(+)$1	1	81	89	16.4626
).))))).	chr4:53578357-53578583(+)$1	1	127	135	20.0447
((((...(	chr7:37558208-37558437(+)$1	1	19	27	15.4925
((.(((((	chr1:88563032-88563261(-)$1	1	28	36	15.4925
........	chr4:126707232-126707468(+)$1	1	169	177	15.4179
.)))))).	chr1:180259280-180259563(-)$1	1	217	225	15.6417
))))))..	chr9:44614487-44614717(-)$1	1	82	90	16.4626
((((((((	chr8:24052548-24052786(+)$1	1	93	101	16.0895
))).....	chr3:151897367-151897621(+)$1	1	103	111	16.4626
........	chr18:61747339-61747583(+)$1	1	71	79	20.0447
))))....	chr18:73751490-73751719(+)$1	1	82	90	20.0447
.......)	chr11:87864370-87864712(+)$1	1	284	292	16.0149
)))(((((	chr11:107548330-107548552(+)$1	1	122	130	20.0447
((.(((((	chr12:8756941-8757168(+)$1	1	49	57	20.0447
........	chr11:31833719-31833946(+)$1	1	31	39	15.7910
)))....(	chr3:119423005-119423232(-)$1	1	69	77	15.6417
(((((.((	chr10:114727439-114727663(-)$1	1	71	79	16.4626
(((((...	chr5:122906304-122906534(-)$1	1	72	80	16.4626
....((((	chr7:74378497-74378746(-)$1	1	48	56	15.4925
......))	chr18:35776627-35776853(+)$1	1	163	171	15.4925
((((((.(	chr15:38421909-38422134(-)$1	1	7	15	16.4626
..((((((	chr4:123413438-123413667(-)$1	1	81	89	16.0895
).....))	chr6:113102460-113102688(+)$1	1	181	189	16.1641
.......)	chr11:31833535-31833761(+)$1	1	31	39	15.3432
)))).)))	chr15:98373124-98373359(-)$1	1	179	187	15.6417
))))....	chrX:91519296-91519528(+)$1	1	115	123	16.4626
))..))))	chr12:56969085-56969315(+)$1	1	41	49	15.9402
........	chr10:117252138-117252363(-)$1	1	38	46	15.5671
..))))))	chr11:78382089-78382317(-)$1	1	204	212	15.6417
........	chr5:52541366-52541591(-)$1	1	199	207	15.9402
......((	chr3:60430835-60431063(+)$1	1	132	140	16.1641
....((((	chr11:31835445-31835671(+)$1	1	2	10	16.0149
.....(((	chr9:88348493-88348734(-)$1	1	91	99	16.1641
......((	chr17:10399767-10399994(-)$1	1	27	35	16.0149
)))(((((	chr11:102167205-102167429(-)$1	1	77	85	16.4626
.(((....	chr6:87793213-87793435(-)$1	1	122	130	20.0447
).))))..	chr12:50487660-50487881(+)$1	1	193	201	16.4626
(((.....	chrX:65969320-65969557(+)$1	1	36	44	15.4179
..(((...	chr18:36450705-36450934(+)$1	1	160	168	20.0447
)).)))).	chr13:9170423-9170651(+)$1	1	54	62	16.4626
........	chr10:79843138-79843367(-)$1	1	22	30	20.0447
....))))	chr11:53232604-53232828(+)$1	1	127	135	15.5671
...(((((	chr7:66560434-66560689(+)$1	1	79	87	20.0447
....))))	chrX:91521942-91522189(+)$1	1	106	114	16.0149
.....(((	chr2:37229878-37230139(-)$1	1	56	64	15.5671
((((....	chr9:7206900-7207138(+)$1	1	169	177	20.0447

#PSSM
U : 0.74	A : 0.11	u : 0.08	C : 0.02	G : 0.01	
U : 0.82	u : 0.08	C : 0.05	G : 0.02	
A : 0.79	a : 0.07	U : 0.04	G : 0.02	C : 0.02	u : 0.01	c : 0.01	
U : 0.82	u : 0.11	A : 0.04	C : 0.01	
U : 0.82	u : 0.10	G : 0.04	C : 0.01	a : 0.01	
U : 0.82	u : 0.13	A : 0.04	
U : 0.70	u : 0.11	A : 0.08	C : 0.04	G : 0.02	a : 0.01	
U : 0.82	u : 0.13	C : 0.02	G : 0.01	

#score	1126.9552238805973
#seq	67
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_EZH2_Kaneko2014_mm9_CDS_m3_run1.nuc.txt

#NT
GAAGCUG	chr14:61989477-61989697(-)$1	220	108	115	12.4893
GAAGCAG	chr3:36469638-36469851(-)$1	213	52	59	16.8510
UAAGCAG	chr9:15139347-15139570(-)$1	223	139	146	12.9148
GCAGCAG	chr16:16213431-16213649(+)$1	218	158	165	13.4468
AAAGCAG	chr11:78034614-78034829(-)$1	215	17	24	13.1276
GAAGGAG	chr10:86166998-86167212(-)$1	214	24	31	12.9148
GAGGCAG	chrX:34138451-34138670(+)$1	219	163	170	12.7021
GAAGAAG	chr10:116493041-116493258(-)$1	217	108	115	12.7021
GAGGCAG	chr8:124408804-124409024(-)$1	220	189	196	12.7021
GAACCAG	chr10:57942469-57942685(+)$1	216	100	107	12.3829
GGAGCAG	chr13:63612803-63613023(-)$1	220	166	173	13.4468
CAAGCAG	chr10:5990007-5990222(-)$1	215	70	77	12.9148
GCAGCAG	chrX:49407612-49407830(-)$1	218	155	162	13.4468
GAAGCAG	chr6:149283115-149283329(+)$1	214	121	128	16.8510
GAGGCAG	chr18:34790758-34790973(-)$1	215	49	56	12.7021
GAAGCCG	chrM:9236-9461(+)$1	225	75	82	12.5957
GCAGCAG	chr2:119758197-119758413(+)$1	216	179	186	13.4468
GAAGGAG	chr10:62275415-62275633(-)$1	218	38	45	12.9148
GAAGGAG	chr12:52891321-52891534(-)$1	213	69	76	12.9148
GAAGCAA	chr7:95429879-95430096(+)$1	217	16	23	12.2765
GGAGCAG	chr15:59149352-59149568(+)$1	216	37	44	13.4468
CAAGCAG	chr7:52382318-52382536(-)$1	218	12	19	12.9148
GCAGCAG	chr16:90258954-90259171(-)$1	217	161	168	13.4468
GAAGGAG	chr2:90420403-90420615(-)$1	212	109	116	12.9148
AAAGCAG	chr4:108151533-108151750(+)$1	217	104	111	13.1276
GAAGCAG	chr11:69123475-69123692(-)$1	217	87	94	16.8510
GAAGCAG	chr4:135883124-135883335(+)$1	211	188	195	16.8510
GAAGCAA	chr1:154991548-154991761(-)$1	213	181	188	12.2765
GAUGCAG	chr16:24681765-24681975(+)$1	210	114	121	12.5957
GGAGCAG	chr7:151649174-151649389(-)$1	215	125	132	13.4468
AAAGCAG	chr7:118220248-118220466(-)$1	218	24	31	13.1276
GGAGCAG	chr4:133036130-133036348(+)$1	218	116	123	13.4468
UAAGCAG	chr18:32229688-32229904(+)$1	216	65	72	12.9148
GAAGCAG	chr14:48296362-48296580(+)$1	218	19	26	16.8510
GAAGAAG	chr17:71797794-71798018(-)$1	224	111	118	12.7021
GAAGCGG	chr8:86462244-86462456(+)$1	212	85	92	12.5957
GAAGCGG	chr6:108799288-108799506(+)$1	218	159	166	12.5957
GAACCAG	chr4:137150306-137150524(+)$1	218	172	179	12.3829
GAUGCAG	chr11:120424888-120425102(-)$1	214	33	40	12.5957
GAAGCAG	chr19:29217638-29217857(+)$1	219	178	185	16.8510
GAAGCCG	chr15:103181402-103181615(-)$1	213	173	180	12.5957
GAAGCAG	chr17:88383881-88384097(+)$1	216	94	101	16.8510
GAAGCAG	chr3:51247692-51247909(+)$1	217	93	100	16.8510
GGAGCAG	chr4:116826850-116827068(-)$1	218	136	143	13.4468
GCAGCAG	chr11:101378527-101378743(-)$1	216	22	29	13.4468
GAAACAG	chr12:114013106-114013324(-)$1	218	123	130	12.2765

#otherMatches

#Struct PSSM
:gggggg	chr13:21871657-21871881(-)$1	224	1	8	13.1276
FFFFKKD	chr14:61989477-61989697(-)$1	220	108	115	12.4893
ddddddd	chr3:36469638-36469851(-)$1	213	52	59	16.8510
c22ffff	chr9:15139347-15139570(-)$1	223	139	146	12.9148
d$$$$$b	chr16:16213431-16213649(+)$1	218	158	165	13.4468
MMDDDDi	chr11:78034614-78034829(-)$1	215	17	24	13.1276
:::gggg	chr10:86166998-86167212(-)$1	214	24	31	12.9148
22aBB}C	chrX:34138451-34138670(+)$1	219	163	170	12.7021
g22ccc2	chr10:116493041-116493258(-)$1	217	108	115	12.7021
e]bbJJJ	chr8:124408804-124409024(-)$1	220	189	196	12.7021
eeecccl	chr10:57942469-57942685(+)$1	216	100	107	12.3829
I::ccc[	chr13:63612803-63613023(-)$1	220	166	173	13.4468
c22bb]d	chr10:5990007-5990222(-)$1	215	70	77	12.9148
:GGGGGG	chrX:49407612-49407830(-)$1	218	155	162	13.4468
JJJJABB	chr6:149283115-149283329(+)$1	214	121	128	16.8510
eeeeeee	chr18:34790758-34790973(-)$1	215	49	56	12.7021
eeee::d	chrM:9236-9461(+)$1	225	75	82	12.5957
f[a!!ee	chr2:119758197-119758413(+)$1	216	179	186	13.4468
cc[bbcc	chr10:62275415-62275633(-)$1	218	38	45	12.9148
nccc]a:	chr12:52891321-52891534(-)$1	213	69	76	12.9148
GGGG{EE	chr7:95429879-95430096(+)$1	217	16	23	12.2765
[cccppp	chr15:59149352-59149568(+)$1	216	37	44	13.4468
e[eeeee	chr7:52382318-52382536(-)$1	218	12	19	12.9148
2bbCCC}	chr16:90258954-90259171(-)$1	217	161	168	13.4468
a:::eee	chr2:90420403-90420615(-)$1	212	109	116	12.9148
eee::::	chr4:108151533-108151750(+)$1	217	104	111	13.1276
dddd22c	chr11:69123475-69123692(-)$1	217	87	94	16.8510
pppdddd	chr4:135883124-135883335(+)$1	211	188	195	16.8510
$$cccmm	chr1:154991548-154991761(-)$1	213	181	188	12.2765
fffff[a	chr16:24681765-24681975(+)$1	210	114	121	12.5957
ffff::C	chr7:151649174-151649389(-)$1	215	125	132	13.4468
iiidddd	chr7:118220248-118220466(-)$1	218	24	31	13.1276
cc[bb[c	chr4:133036130-133036348(+)$1	218	116	123	13.4468
+++++++	chr18:32229688-32229904(+)$1	216	65	72	12.9148
tttta22	chr14:48296362-48296580(+)$1	218	19	26	16.8510
c22bbcc	chr17:71797794-71798018(-)$1	224	111	118	12.7021
bb[a[bb	chr8:86462244-86462456(+)$1	212	85	92	12.5957
!!dddd[	chr6:108799288-108799506(+)$1	218	159	166	12.5957
dddd[dd	chr4:137150306-137150524(+)$1	218	172	179	12.3829
ea[cccm	chr11:120424888-120425102(-)$1	214	33	40	12.5957
EEEEE~~	chr19:29217638-29217857(+)$1	219	178	185	16.8510
eeeeell	chr15:103181402-103181615(-)$1	213	173	180	12.5957
rrrbbdd	chr17:88383881-88384097(+)$1	216	94	101	16.8510
!!ggggg	chr3:51247692-51247909(+)$1	217	93	100	16.8510
foooooo	chr4:116826850-116827068(-)$1	218	136	143	13.4468
ee!!ccc	chr11:101378527-101378743(-)$1	216	22	29	13.4468
a!!ccc[	chr12:114013106-114013324(-)$1	218	123	130	12.2765

#DB
.((((((	chr13:21871657-21871881(-)$1	1	1	8	13.1276
((((..(	chr14:61989477-61989697(-)$1	1	108	115	12.4893
)))))))	chr3:36469638-36469851(-)$1	1	52	59	16.8510
)..))))	chr9:15139347-15139570(-)$1	1	139	146	12.9148
(.....(	chr16:16213431-16213649(+)$1	1	158	165	13.4468
..(((((	chr11:78034614-78034829(-)$1	1	17	24	13.1276
...((((	chr10:86166998-86167212(-)$1	1	24	31	12.9148
..))).)	chrX:34138451-34138670(+)$1	1	163	170	12.7021
)..))).	chr10:116493041-116493258(-)$1	1	108	115	12.7021
).)))))	chr8:124408804-124409024(-)$1	1	189	196	12.7021
((((((.	chr10:57942469-57942685(+)$1	1	100	107	12.3829
(..(((.	chr13:63612803-63613023(-)$1	1	166	173	13.4468
)..)).)	chr10:5990007-5990222(-)$1	1	70	77	12.9148
.))))))	chrX:49407612-49407830(-)$1	1	155	162	13.4468
(((((((	chr6:149283115-149283329(+)$1	1	121	128	16.8510
)))))))	chr18:34790758-34790973(-)$1	1	49	56	12.7021
))))..(	chrM:9236-9461(+)$1	1	75	82	12.5957
(.(..((	chr2:119758197-119758413(+)$1	1	179	186	13.4468
((.((((	chr10:62275415-62275633(-)$1	1	38	45	12.9148
.))).).	chr12:52891321-52891534(-)$1	1	69	76	12.9148
((((.((	chr7:95429879-95430096(+)$1	1	16	23	12.2765
.(((...	chr15:59149352-59149568(+)$1	1	37	44	13.4468
(.(((((	chr7:52382318-52382536(-)$1	1	12	19	12.9148
.))))).	chr16:90258954-90259171(-)$1	1	161	168	13.4468
)...(((	chr2:90420403-90420615(-)$1	1	109	116	12.9148
)))....	chr4:108151533-108151750(+)$1	1	104	111	13.1276
))))..)	chr11:69123475-69123692(-)$1	1	87	94	16.8510
...))))	chr4:135883124-135883335(+)$1	1	188	195	16.8510
..(((..	chr1:154991548-154991761(-)$1	1	181	188	12.2765
(((((.(	chr16:24681765-24681975(+)$1	1	114	121	12.5957
))))..(	chr7:151649174-151649389(-)$1	1	125	132	13.4468
(((((((	chr7:118220248-118220466(-)$1	1	24	31	13.1276
((.((.(	chr4:133036130-133036348(+)$1	1	116	123	13.4468
.......	chr18:32229688-32229904(+)$1	1	65	72	12.9148
....)..	chr14:48296362-48296580(+)$1	1	19	26	16.8510
)..))))	chr17:71797794-71798018(-)$1	1	111	118	12.7021
((.(.((	chr8:86462244-86462456(+)$1	1	85	92	12.5957
..((((.	chr6:108799288-108799506(+)$1	1	159	166	12.5957
((((.((	chr4:137150306-137150524(+)$1	1	172	179	12.3829
((.(((.	chr11:120424888-120425102(-)$1	1	33	40	12.5957
)))))..	chr19:29217638-29217857(+)$1	1	178	185	16.8510
(((((..	chr15:103181402-103181615(-)$1	1	173	180	12.5957
...))))	chr17:88383881-88384097(+)$1	1	94	101	16.8510
..(((((	chr3:51247692-51247909(+)$1	1	93	100	16.8510
(......	chr4:116826850-116827068(-)$1	1	136	143	13.4468
((..(((	chr11:101378527-101378743(-)$1	1	22	29	13.4468
(..(((.	chr12:114013106-114013324(-)$1	1	123	130	12.2765

#PSSM
G : 0.82	A : 0.08	U : 0.04	C : 0.04	
A : 0.78	C : 0.10	G : 0.10	
A : 0.89	G : 0.06	U : 0.04	
G : 0.93	C : 0.04	A : 0.02	
C : 0.87	G : 0.08	A : 0.04	
A : 0.89	C : 0.04	G : 0.04	U : 0.02	
G : 0.95	A : 0.04	

#score	638.276595744681
#seq	47
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_UTR_m1_run2.nuc.txt

#NT
GAAGA	chr10:7640168-7640399(-)$1	231	156	161	15.0000
GAAGA	chr16:50196585-50196814(-)$1	229	155	160	15.0000
GAAGA	chr15:75877523-75877747(-)$1	224	130	135	15.0000
GAAGA	chr2:48755531-48755771(+)$1	240	28	33	15.0000
gaaga	chr15:35002748-35002977(-)$1	229	7	12	15.0000
GAAGA	chr13:48976043-48976269(-)$1	226	96	101	15.0000
GAAGA	chr12:110053859-110054101(+)$1	242	9	14	15.0000
GAAGA	chr10:90579697-90579930(-)$1	233	194	199	15.0000
GAAGA	chr2:50987731-50987960(-)$1	229	125	130	15.0000
GAAGA	chr16:5055089-5055311(+)$1	222	181	186	15.0000
GAAGA	chr2:34678139-34678390(-)$1	251	179	184	15.0000
GAAGA	chr4:55093769-55093992(+)$1	223	72	77	15.0000
GAAGA	chr13:112223725-112223954(-)$1	229	121	126	15.0000
GAAGA	chrX:11613883-11614110(-)$1	227	27	32	15.0000
GAAGA	chr7:77499301-77499530(-)$1	229	99	104	15.0000
GAAGA	chr5:144181994-144182218(+)$1	224	44	49	15.0000
GAAGA	chr18:36020515-36020756(+)$1	241	73	78	15.0000
GAAGA	chrX:138147913-138148135(-)$1	222	70	75	15.0000
GAAGA	chr11:105142842-105143072(+)$1	230	90	95	15.0000
GAAGA	chr11:79845353-79845581(+)$1	228	65	70	15.0000
GAAGA	chr11:86315511-86315735(-)$1	224	143	148	15.0000
GAAGA	chr10:115922159-115922379(-)$1	220	78	83	15.0000
GAAGA	chr19:60837882-60838105(-)$1	223	92	97	15.0000
GAAGA	chr11:77523095-77523336(+)$1	241	4	9	15.0000
GAAGA	chr10:42254433-42254663(+)$1	230	140	145	15.0000
GAAGA	chr10:62480777-62481010(-)$1	233	96	101	15.0000
GAAGA	chr7:135586035-135586259(-)$1	224	59	64	15.0000
GAAGA	chr17:66797556-66797783(-)$1	227	70	75	15.0000
GAAGA	chr6:148791333-148791556(-)$1	223	15	20	15.0000
GAAGA	chr2:26777405-26777637(-)$1	232	194	199	15.0000
GAAGA	chrX:91497651-91497900(+)$1	249	220	225	15.0000
GAAGA	chr11:87863707-87863951(+)$1	244	121	126	15.0000
GAAGA	chr2:153056305-153056533(-)$1	228	194	199	15.0000
GAAGA	chr3:101961881-101962104(-)$1	223	179	184	15.0000
GAAGA	chr7:138054396-138054644(+)$1	248	207	212	15.0000
GAAGA	chr2:144219001-144219222(+)$1	221	167	172	15.0000
GAAGA	chr11:96135969-96136205(+)$1	236	170	175	15.0000
GAAGA	chr12:8716123-8716349(+)$1	226	37	42	15.0000
GAAGA	chr2:50987820-50988056(-)$1	236	221	226	15.0000
GAAGA	chr13:54687080-54687306(-)$1	226	47	52	15.0000
GAAGA	chr4:117540558-117540802(+)$1	244	190	195	15.0000

#otherMatches

#Struct PSSM
fffff	chr5:100464605-100464847(-)$1	242	38	43	15.0000
333dd	chr10:7640168-7640399(-)$1	231	156	161	15.0000
eeeed	chr16:50196585-50196814(-)$1	229	155	160	15.0000
ttfff	chr15:75877523-75877747(-)$1	224	130	135	15.0000
eee$$	chr2:48755531-48755771(+)$1	240	28	33	15.0000
C:::g	chr15:35002748-35002977(-)$1	229	7	12	15.0000
hhhcc	chr13:48976043-48976269(-)$1	226	96	101	15.0000
:::DD	chr12:110053859-110054101(+)$1	242	9	14	15.0000
444bb	chr10:90579697-90579930(-)$1	233	194	199	15.0000
ee333	chr2:50987731-50987960(-)$1	229	125	130	15.0000
mmmee	chr16:5055089-5055311(+)$1	222	181	186	15.0000
eeddd	chr2:34678139-34678390(-)$1	251	179	184	15.0000
F::::	chr4:55093769-55093992(+)$1	223	72	77	15.0000
iiiii	chr13:112223725-112223954(-)$1	229	121	126	15.0000
$$$$b	chrX:11613883-11614110(-)$1	227	27	32	15.0000
6bb]i	chr7:77499301-77499530(-)$1	229	99	104	15.0000
c[ddd	chr5:144181994-144182218(+)$1	224	44	49	15.0000
cc!!e	chr18:36020515-36020756(+)$1	241	73	78	15.0000
HHHH:	chrX:138147913-138148135(-)$1	222	70	75	15.0000
[ccci	chr11:105142842-105143072(+)$1	230	90	95	15.0000
:::::	chr11:79845353-79845581(+)$1	228	65	70	15.0000
rrrrr	chr11:86315511-86315735(-)$1	224	143	148	15.0000
b[fff	chr10:115922159-115922379(-)$1	220	78	83	15.0000
KKCCC	chr19:60837882-60838105(-)$1	223	92	97	15.0000
:::A{	chr11:77523095-77523336(+)$1	241	4	9	15.0000
bb[cc	chr10:42254433-42254663(+)$1	230	140	145	15.0000
:::::	chr10:62480777-62481010(-)$1	233	96	101	15.0000
Hdddd	chr7:135586035-135586259(-)$1	224	59	64	15.0000
:::dd	chr17:66797556-66797783(-)$1	227	70	75	15.0000
JJJJJ	chr6:148791333-148791556(-)$1	223	15	20	15.0000
GG}DD	chr2:26777405-26777637(-)$1	232	194	199	15.0000
oooee	chrX:91497651-91497900(+)$1	249	220	225	15.0000
ffff:	chr11:87863707-87863951(+)$1	244	121	126	15.0000
b]===	chr2:153056305-153056533(-)$1	228	194	199	15.0000
mmmdd	chr3:101961881-101962104(-)$1	223	179	184	15.0000
D}BB}	chr7:138054396-138054644(+)$1	248	207	212	15.0000
wwwwd	chr2:144219001-144219222(+)$1	221	167	172	15.0000
:::::	chr11:96135969-96136205(+)$1	236	170	175	15.0000
cccff	chr12:8716123-8716349(+)$1	226	37	42	15.0000
22ddd	chr2:50987820-50988056(-)$1	236	221	226	15.0000
dd"""	chr13:54687080-54687306(-)$1	226	47	52	15.0000
dmmmm	chr4:117540558-117540802(+)$1	244	190	195	15.0000

#DB
(((((	chr5:100464605-100464847(-)$1	1	38	43	15.0000
...))	chr10:7640168-7640399(-)$1	1	156	161	15.0000
)))))	chr16:50196585-50196814(-)$1	1	155	160	15.0000
..)))	chr15:75877523-75877747(-)$1	1	130	135	15.0000
(((..	chr2:48755531-48755771(+)$1	1	28	33	15.0000
(...(	chr15:35002748-35002977(-)$1	1	7	12	15.0000
(((((	chr13:48976043-48976269(-)$1	1	96	101	15.0000
...((	chr12:110053859-110054101(+)$1	1	9	14	15.0000
...))	chr10:90579697-90579930(-)$1	1	194	199	15.0000
))...	chr2:50987731-50987960(-)$1	1	125	130	15.0000
...))	chr16:5055089-5055311(+)$1	1	181	186	15.0000
)))))	chr2:34678139-34678390(-)$1	1	179	184	15.0000
(....	chr4:55093769-55093992(+)$1	1	72	77	15.0000
)))))	chr13:112223725-112223954(-)$1	1	121	126	15.0000
....(	chrX:11613883-11614110(-)$1	1	27	32	15.0000
.)).)	chr7:77499301-77499530(-)$1	1	99	104	15.0000
(.(((	chr5:144181994-144182218(+)$1	1	44	49	15.0000
((..(	chr18:36020515-36020756(+)$1	1	73	78	15.0000
((((.	chrX:138147913-138148135(-)$1	1	70	75	15.0000
.((((	chr11:105142842-105143072(+)$1	1	90	95	15.0000
.....	chr11:79845353-79845581(+)$1	1	65	70	15.0000
.....	chr11:86315511-86315735(-)$1	1	143	148	15.0000
(.(((	chr10:115922159-115922379(-)$1	1	78	83	15.0000
..(((	chr19:60837882-60838105(-)$1	1	92	97	15.0000
...(.	chr11:77523095-77523336(+)$1	1	4	9	15.0000
((.((	chr10:42254433-42254663(+)$1	1	140	145	15.0000
.....	chr10:62480777-62481010(-)$1	1	96	101	15.0000
(((((	chr7:135586035-135586259(-)$1	1	59	64	15.0000
...((	chr17:66797556-66797783(-)$1	1	70	75	15.0000
(((((	chr6:148791333-148791556(-)$1	1	15	20	15.0000
)).))	chr2:26777405-26777637(-)$1	1	194	199	15.0000
...))	chrX:91497651-91497900(+)$1	1	220	225	15.0000
)))).	chr11:87863707-87863951(+)$1	1	121	126	15.0000
).)))	chr2:153056305-153056533(-)$1	1	194	199	15.0000
...))	chr3:101961881-101962104(-)$1	1	179	184	15.0000
).)).	chr7:138054396-138054644(+)$1	1	207	212	15.0000
....)	chr2:144219001-144219222(+)$1	1	167	172	15.0000
.....	chr11:96135969-96136205(+)$1	1	170	175	15.0000
)))))	chr12:8716123-8716349(+)$1	1	37	42	15.0000
..)))	chr2:50987820-50988056(-)$1	1	221	226	15.0000
((...	chr13:54687080-54687306(-)$1	1	47	52	15.0000
(....	chr4:117540558-117540802(+)$1	1	190	195	15.0000

#PSSM
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	

#score	630.0000000000001
#seq	42
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Cirbp_Liu2013_mm9_CDS_m3_run2.nuc.txt

#NT
UGGAGAAC	chr17:34251242-34251484(-)$1	242	68	76	12.2500
UGGAAGAU	chr11:87862905-87863153(+)$1	248	61	69	12.0833
UGGAGGAA	chr6:67217009-67217237(+)$1	228	53	61	16.4166
UGGAGAAA	chr12:56478103-56478322(+)$1	219	84	92	13.0000
UGCAGGAG	chr17:35296190-35296418(-)$1	228	202	210	12.3333
UGGAGUAU	chr4:108723426-108723666(+)$1	240	97	105	12.7500
UGGAAGAU	chr11:87862811-87863041(+)$1	230	155	163	12.0833
UGGAGGAC	chr6:48033031-48033270(-)$1	239	110	118	15.6666
UGCAGGAU	chr11:44377374-44377594(+)$1	220	91	99	12.9166
UGCAGGAA	chr2:125668257-125668495(-)$1	238	58	66	13.0833
UGGAGGAA	chr9:45776792-45777018(-)$1	226	207	215	16.4166
UGCAGGAG	chr10:128253735-128253959(+)$1	224	27	35	12.3333
UGAAGGAA	chr11:23233596-23233830(+)$1	234	46	54	12.8333
AGGAGGAG	chr6:125064295-125064527(+)$1	232	11	19	10.8333
UGGAGAAA	chr10:116498513-116498737(-)$1	224	73	81	13.0000
UGUAGGAU	chr1:135500518-135500749(-)$1	231	169	177	12.5000
UGUAGGAG	chr3:152023146-152023368(+)$1	222	95	103	11.9166
UGGAGGUG	chr1:136385567-136385795(+)$1	228	192	200	11.3333
UGGAGGCA	chr1:129699461-129699710(+)$1	249	239	247	12.1666
UGGAGAAA	chr4:131760398-131760628(-)$1	230	31	39	13.0000
UGGAGUAG	chr18:35064595-35064824(-)$1	229	23	31	12.1666
UGGAGGAU	chr7:125355936-125356177(-)$1	241	104	112	16.2500
UGGGGGAU	chr14:70666343-70666568(-)$1	225	59	67	12.3333
UGGAGGGA	chr5:115597833-115598057(-)$1	224	161	169	12.0000
UAGAGGAA	chr9:88351140-88351382(-)$1	242	19	27	11.5833
UGGAGGAU	chr11:4982270-4982508(-)$1	238	124	132	16.2500
UGAAGGAA	chr17:33806942-33807170(-)$1	228	129	137	12.8333
UGCAGGAG	chr13:8978575-8978819(-)$1	244	88	96	12.3333
UGGAAGAU	chr9:82826468-82826694(-)$1	226	61	69	12.0833
UGGAGAAG	chr7:118217787-118218011(-)$1	224	31	39	12.2500
UGGAGCAC	chr1:55053577-55053811(-)$1	234	119	127	11.9166
UGGCGGAU	chr2:121751252-121751471(+)$1	219	98	106	12.3333
UGGCGGAC	chr7:90905503-90905734(+)$1	231	59	67	11.7500
UGGAGUAC	chr18:35064541-35064767(-)$1	226	76	84	12.1666
UGGAGGUU	chrM:13781-14007(-)$1	226	17	25	11.9166
UGGAGGAA	chrX:148462268-148462514(+)$1	246	174	182	16.4166
UGGAGUAA	chr14:105552597-105552835(-)$1	238	128	136	12.9166
UGGAAGAG	chr2:72776290-72776520(-)$1	230	214	222	11.5000
UGGAGCAG	chr9:64574438-64574689(-)$1	251	74	82	11.9166
UGCAGGAU	chr1:132615575-132615808(+)$1	233	129	137	12.9166
UGGAGGAA	chr16:23113139-23113389(+)$1	250	207	215	16.4166
UGGAGGCU	chr12:60172312-60172561(+)$1	249	148	156	12.0000
UGGAGGCC	chrX:91518596-91518846(+)$1	250	33	41	11.4166
UGCAGGAA	chr13:9157765-9158006(+)$1	241	26	34	13.0833
UGAAGGAA	chr3:51246589-51246852(+)$1	263	63	71	12.8333
UGGGGGAA	chr11:87863347-87863702(+)$1	355	83	91	12.5000
UGGUGGAU	chr12:78513747-78513980(+)$1	233	109	117	12.7500
UGAAGGAC	chr19:39024577-39024830(+)$1	253	129	137	12.0833
UGGUGGAU	chr14:105514314-105514536(-)$1	222	49	57	12.7500
UGGUGGAC	chr1:36406153-36406380(-)$1	227	114	122	12.1666
UGGUGGAU	chr13:46766504-46766757(+)$1	253	121	129	12.7500
UGGAGGAC	chr10:126737472-126737703(-)$1	231	80	88	15.6666
UGGAGAAA	chr11:49884605-49884853(+)$1	248	130	138	13.0000
UGGAGGAG	chr6:51414374-51414633(-)$1	259	115	123	15.6666
UGGUGGAA	chr10:7357829-7358064(-)$1	235	61	69	12.9166
UGGAGUAA	chr2:14994708-14994932(+)$1	224	158	166	12.9166
UGGAUGAC	chr17:35388155-35388394(+)$1	239	52	60	11.3333
UGGUGGAC	chr11:69559774-69559999(-)$1	225	199	207	12.1666
UGGUGGAU	chr9:54730045-54730287(+)$1	242	94	102	12.7500

#otherMatches

#Struct PSSM
bbpppppp	chr12:102291601-102291857(-)$1	256	67	75	11.9166
hhhhhhhh	chr17:34251242-34251484(-)$1	242	68	76	12.2500
ggg$$$$$	chr11:87862905-87863153(+)$1	248	61	69	12.0833
ddd]ccc]	chr6:67217009-67217237(+)$1	228	53	61	16.4166
d####ggg	chr12:56478103-56478322(+)$1	219	84	92	13.0000
EECCCYYA	chr17:35296190-35296418(-)$1	228	202	210	12.3333
ccc]bb77	chr4:108723426-108723666(+)$1	240	97	105	12.7500
ggg$$$$$	chr11:87862811-87863041(+)$1	230	155	163	12.0833
b]a4444d	chr6:48033031-48033270(-)$1	239	110	118	15.6666
nnnnccc7	chr11:44377374-44377594(+)$1	220	91	99	12.9166
8888====	chr2:125668257-125668495(-)$1	238	58	66	13.0833
cccdddd2	chr9:45776792-45777018(-)$1	226	207	215	16.4166
e[a####e	chr10:128253735-128253959(+)$1	224	27	35	12.3333
DDD{FFFF	chr11:23233596-23233830(+)$1	234	46	54	12.8333
mmeeeee2	chr6:125064295-125064527(+)$1	232	11	19	10.8333
KDDDD:::	chr10:116498513-116498737(-)$1	224	73	81	13.0000
ffffff[c	chr1:135500518-135500749(-)$1	231	169	177	12.5000
22ffffff	chr3:152023146-152023368(+)$1	222	95	103	11.9166
dddd]ddd	chr1:136385567-136385795(+)$1	228	192	200	11.3333
ddd]ccc:	chr1:129699461-129699710(+)$1	249	239	247	12.1666
c!!ccc""	chr4:131760398-131760628(-)$1	230	31	39	13.0000
ciiiiiii	chr18:35064595-35064824(-)$1	229	23	31	12.1666
ggg!!ddd	chr7:125355936-125356177(-)$1	241	104	112	16.2500
FFFFFF::	chr14:70666343-70666568(-)$1	225	59	67	12.3333
HHHDDDD}	chr5:115597833-115598057(-)$1	224	161	169	12.0000
b"""ccc[	chr9:88351140-88351382(-)$1	242	19	27	11.5833
hhhhhmmm	chr11:4982270-4982508(-)$1	238	124	132	16.2500
c::JJJJJ	chr17:33806942-33807170(-)$1	228	129	137	12.8333
fffmmmmf	chr13:8978575-8978819(-)$1	244	88	96	12.3333
g:::::::	chr9:82826468-82826694(-)$1	226	61	69	12.0833
pdddd22d	chr7:118217787-118218011(-)$1	224	31	39	12.2500
6666eeee	chr1:55053577-55053811(-)$1	234	119	127	11.9166
88hhhhhh	chr2:121751252-121751471(+)$1	219	98	106	12.3333
cccnnnnn	chr7:90905503-90905734(+)$1	231	59	67	11.7500
DDDD{A{C	chr18:35064541-35064767(-)$1	226	76	84	12.1666
qqqdddd:	chrM:13781-14007(-)$1	226	17	25	11.9166
^^^^^^^^	chrX:148462268-148462514(+)$1	246	174	182	16.4166
cc22dddd	chr14:105552597-105552835(-)$1	238	128	136	12.9166
ffff333f	chr2:72776290-72776520(-)$1	230	214	222	11.5000
gggg[ggg	chr9:64574438-64574689(-)$1	251	74	82	11.9166
[ggggggg	chr1:132615575-132615808(+)$1	233	129	137	12.9166
eeeebboo	chr16:23113139-23113389(+)$1	250	207	215	16.4166
:::ddddl	chr12:60172312-60172561(+)$1	249	148	156	12.0000
oooodddd	chrX:91518596-91518846(+)$1	250	33	41	11.4166
fffcccll	chr13:9157765-9158006(+)$1	241	26	34	13.0833
cc22====	chr3:51246589-51246852(+)$1	263	63	71	12.8333
FFFFF:::	chr11:87863347-87863702(+)$1	355	83	91	12.5000
cc22dddd	chr12:78513747-78513980(+)$1	233	109	117	12.7500
cc22ccc4	chr19:39024577-39024830(+)$1	253	129	137	12.0833
GGGGKKCC	chr14:105514314-105514536(-)$1	222	49	57	12.7500
iii22ccc	chr1:36406153-36406380(-)$1	227	114	122	12.1666
======[b	chr13:46766504-46766757(+)$1	253	121	129	12.7500
]a]eeeee	chr10:126737472-126737703(-)$1	231	80	88	15.6666
eeeeeeoo	chr11:49884605-49884853(+)$1	248	130	138	13.0000
++++++++	chr6:51414374-51414633(-)$1	259	115	123	15.6666
ddd]ffff	chr10:7357829-7358064(-)$1	235	61	69	12.9166
ddd]bb66	chr2:14994708-14994932(+)$1	224	158	166	12.9166
OOOOOOBB	chr17:35388155-35388394(+)$1	239	52	60	11.3333
mmddddcc	chr11:69559774-69559999(-)$1	225	199	207	12.1666
KGGGGGGG	chr9:54730045-54730287(+)$1	242	94	102	12.7500

#DB
((......	chr12:102291601-102291857(-)$1	1	67	75	11.9166
((((((((	chr17:34251242-34251484(-)$1	1	68	76	12.2500
(((.....	chr11:87862905-87863153(+)$1	1	61	69	12.0833
))).))).	chr6:67217009-67217237(+)$1	1	53	61	16.4166
(....(((	chr12:56478103-56478322(+)$1	1	84	92	13.0000
)))))..)	chr17:35296190-35296418(-)$1	1	202	210	12.3333
))).))..	chr4:108723426-108723666(+)$1	1	97	105	12.7500
(((.....	chr11:87862811-87863041(+)$1	1	155	163	12.0833
).)....)	chr6:48033031-48033270(-)$1	1	110	118	15.6666
....))).	chr11:44377374-44377594(+)$1	1	91	99	12.9166
....))))	chr2:125668257-125668495(-)$1	1	58	66	13.0833
))))))).	chr9:45776792-45777018(-)$1	1	207	215	16.4166
(.(....(	chr10:128253735-128253959(+)$1	1	27	35	12.3333
(((.((((	chr11:23233596-23233830(+)$1	1	46	54	12.8333
..))))).	chr6:125064295-125064527(+)$1	1	11	19	10.8333
.((((...	chr10:116498513-116498737(-)$1	1	73	81	13.0000
((((((.(	chr1:135500518-135500749(-)$1	1	169	177	12.5000
..))))))	chr3:152023146-152023368(+)$1	1	95	103	11.9166
)))).)))	chr1:136385567-136385795(+)$1	1	192	200	11.3333
))).))).	chr1:129699461-129699710(+)$1	1	239	247	12.1666
(..(((..	chr4:131760398-131760628(-)$1	1	31	39	13.0000
((((((((	chr18:35064595-35064824(-)$1	1	23	31	12.1666
(((..(((	chr7:125355936-125356177(-)$1	1	104	112	16.2500
((((((..	chr14:70666343-70666568(-)$1	1	59	67	12.3333
))))))).	chr5:115597833-115598057(-)$1	1	161	169	12.0000
(...(((.	chr9:88351140-88351382(-)$1	1	19	27	11.5833
(((((...	chr11:4982270-4982508(-)$1	1	124	132	16.2500
)..)))))	chr17:33806942-33807170(-)$1	1	129	137	12.8333
(((....)	chr13:8978575-8978819(-)$1	1	88	96	12.3333
).......	chr9:82826468-82826694(-)$1	1	61	69	12.0833
.))))..)	chr7:118217787-118218011(-)$1	1	31	39	12.2500
....))))	chr1:55053577-55053811(-)$1	1	119	127	11.9166
..))))))	chr2:121751252-121751471(+)$1	1	98	106	12.3333
(((.....	chr7:90905503-90905734(+)$1	1	59	67	11.7500
((((.(.(	chr18:35064541-35064767(-)$1	1	76	84	12.1666
...)))).	chrM:13781-14007(-)$1	1	17	25	11.9166
........	chrX:148462268-148462514(+)$1	1	174	182	16.4166
))..))))	chr14:105552597-105552835(-)$1	1	128	136	12.9166
))))...)	chr2:72776290-72776520(-)$1	1	214	222	11.5000
((((.(((	chr9:64574438-64574689(-)$1	1	74	82	11.9166
.(((((((	chr1:132615575-132615808(+)$1	1	129	137	12.9166
))))((..	chr16:23113139-23113389(+)$1	1	207	215	16.4166
...((((.	chr12:60172312-60172561(+)$1	1	148	156	12.0000
....))))	chrX:91518596-91518846(+)$1	1	33	41	11.4166
((((((..	chr13:9157765-9158006(+)$1	1	26	34	13.0833
))..))))	chr3:51246589-51246852(+)$1	1	63	71	12.8333
(((((...	chr11:87863347-87863702(+)$1	1	83	91	12.5000
))..))))	chr12:78513747-78513980(+)$1	1	109	117	12.7500
))..))).	chr19:39024577-39024830(+)$1	1	129	137	12.0833
((((..((	chr14:105514314-105514536(-)$1	1	49	57	12.7500
)))..)))	chr1:36406153-36406380(-)$1	1	114	122	12.1666
((((((.(	chr13:46766504-46766757(+)$1	1	121	129	12.7500
.).)))))	chr10:126737472-126737703(-)$1	1	80	88	15.6666
)(((((..	chr11:49884605-49884853(+)$1	1	130	138	13.0000
........	chr6:51414374-51414633(-)$1	1	115	123	15.6666
))).))))	chr10:7357829-7358064(-)$1	1	61	69	12.9166
))).))..	chr2:14994708-14994932(+)$1	1	158	166	12.9166
......((	chr17:35388155-35388394(+)$1	1	52	60	11.3333
..))))))	chr11:69559774-69559999(-)$1	1	199	207	12.1666
.(((((((	chr9:54730045-54730287(+)$1	1	94	102	12.7500

#PSSM
U : 0.98	A : 0.01	
G : 0.98	A : 0.01	
G : 0.78	C : 0.11	A : 0.06	U : 0.03	
A : 0.81	U : 0.11	G : 0.03	C : 0.03	
G : 0.90	A : 0.06	U : 0.03	
G : 0.78	A : 0.09	U : 0.08	C : 0.03	
A : 0.90	C : 0.05	U : 0.03	G : 0.01	
A : 0.33	U : 0.30	C : 0.18	G : 0.18	

#score	773.833333333335
#seq	60
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_UTR_m3_run1.nuc.txt

#NT
GCAG	chr11:69734692-69734922(-)$1	230	29	33	12.0000
GCAG	chr2:105524963-105525186(+)$1	223	76	80	12.0000
GCAG	chr19:6376288-6376517(+)$1	229	21	25	12.0000
GCAG	chr13:54687080-54687306(-)$1	226	27	31	12.0000
GCAG	chr7:134704388-134704612(+)$1	224	104	108	12.0000
GCAG	chr11:116711834-116712057(-)$1	223	172	176	12.0000
GCAG	chr9:62643739-62643978(-)$1	239	4	8	12.0000
GCAG	chr2:154471536-154471761(+)$1	225	57	61	12.0000
GCAG	chr6:67234073-67234311(+)$1	238	113	117	12.0000
GCAG	chr19:45231163-45231387(+)$1	224	123	127	12.0000
GCAG	chr11:75320067-75320288(+)$1	221	32	36	12.0000
GCAG	chr5:100464605-100464847(-)$1	242	102	106	12.0000
GCAG	chr4:133309423-133309670(-)$1	247	3	7	12.0000
GCAG	chr6:52154408-52154645(-)$1	237	110	114	12.0000
GCAG	chr2:26777405-26777637(-)$1	232	12	16	12.0000
GCAG	chr16:37883469-37883698(+)$1	229	63	67	12.0000
GCAG	chr4:136105000-136105228(+)$1	228	18	22	12.0000
GCAG	chr11:96136049-96136275(+)$1	226	11	15	12.0000
GCAG	chr11:69212905-69213138(-)$1	233	36	40	12.0000
GCAG	chr4:133308589-133308819(-)$1	230	99	103	12.0000
GCAG	chr7:112784167-112784391(-)$1	224	17	21	12.0000
GCAG	chr5:130717172-130717409(+)$1	237	232	236	12.0000
GCAG	chr10:31328869-31329106(-)$1	237	8	12	12.0000
GCAG	chr5:145942660-145942884(+)$1	224	32	36	12.0000
GCAG	chr1:192995259-192995487(-)$1	228	117	121	12.0000
GCAG	chr15:80066235-80066461(+)$1	226	50	54	12.0000
GCAG	chr5:100465408-100465636(-)$1	228	124	128	12.0000
GCAG	chr2:155923851-155924098(-)$1	247	7	11	12.0000
GCAG	chr7:129221965-129222228(+)$1	263	96	100	12.0000
gcag	chr3:68819996-68820245(+)$1	249	237	241	12.0000
GCAG	chr8:112465007-112465233(+)$1	226	27	31	12.0000
GCAG	chr2:162760636-162760862(+)$1	226	143	147	12.0000
GCAG	chr1:173268537-173268768(+)$1	231	166	170	12.0000
GCAG	chr7:109168600-109168825(-)$1	225	115	119	12.0000
GCAG	chr14:35227318-35227548(-)$1	230	221	225	12.0000
GCAG	chr7:91764045-91764274(-)$1	229	128	132	12.0000
GCAG	chr11:94152534-94152764(-)$1	230	225	229	12.0000
GCAG	chr11:69803430-69803660(+)$1	230	207	211	12.0000
GCAG	chr10:79325996-79326220(+)$1	224	79	83	12.0000
GCAG	chr14:8922918-8923139(+)$1	221	24	28	12.0000
GCAG	chr9:106740544-106740779(+)$1	235	41	45	12.0000
GCAG	chr7:134168917-134169144(-)$1	227	222	226	12.0000
GCAG	chr5:136386763-136387006(-)$1	243	66	70	12.0000
GCAG	chr8:109410787-109411017(-)$1	230	99	103	12.0000
GCAG	chr9:101004379-101004597(+)$1	218	165	169	12.0000
GCAG	chr17:35380093-35380317(+)$1	224	94	98	12.0000
GCAG	chr13:112223725-112223954(-)$1	229	92	96	12.0000
GCAG	chr11:58752052-58752291(-)$1	239	175	179	12.0000
GCAG	chr19:12843674-12843903(-)$1	229	34	38	12.0000
GCAG	chr13:31902216-31902440(+)$1	224	169	173	12.0000
GCAG	chr8:98012165-98012394(-)$1	229	66	70	12.0000
GCAG	chr2:34678228-34678455(-)$1	227	142	146	12.0000
GCAG	chrX:91497651-91497900(+)$1	249	112	116	12.0000
GCAG	chr14:35558943-35559170(+)$1	227	126	130	12.0000
GCAG	chr8:46136560-46136804(+)$1	244	184	188	12.0000
GCAG	chrX:12869384-12869611(+)$1	227	12	16	12.0000
GCAG	chr19:6376326-6376547(+)$1	221	43	47	12.0000
GCAG	chr12:8716123-8716349(+)$1	226	32	36	12.0000
GCAG	chr15:81654042-81654264(+)$1	222	85	89	12.0000
GCAG	chr6:17587014-17587245(+)$1	231	124	128	12.0000
GCAG	chr16:20692458-20692689(+)$1	231	57	61	12.0000
gcag	chr9:123370982-123371231(+)$1	249	69	73	12.0000
GCAG	chr19:10620133-10620357(+)$1	224	44	48	12.0000
GCAG	chr2:34678139-34678390(-)$1	251	77	81	12.0000
GCAG	chr10:36855702-36855948(-)$1	246	176	180	12.0000
GCAG	chr5:100464491-100464722(-)$1	231	30	34	12.0000
GCAG	chr4:41604973-41605196(-)$1	223	56	60	12.0000
GCAG	chr15:35002748-35002977(-)$1	229	136	140	12.0000
GCAG	chr11:120825083-120825312(-)$1	229	167	171	12.0000
GCAG	chr11:97989541-97989768(-)$1	227	52	56	12.0000
GCAG	chr2:155923912-155924165(-)$1	253	53	57	12.0000
GCAG	chr5:136410152-136410381(-)$1	229	125	129	12.0000

#otherMatches

#Struct PSSM
CC}C	chr4:147991490-147991721(-)$1	231	221	225	12.0000
bb[g	chr11:69734692-69734922(-)$1	230	29	33	12.0000
ffff	chr2:105524963-105525186(+)$1	223	76	80	12.0000
CC{B	chr19:6376288-6376517(+)$1	229	21	25	12.0000
e]ii	chr13:54687080-54687306(-)$1	226	27	31	12.0000
ffff	chr7:134704388-134704612(+)$1	224	104	108	12.0000
EEEY	chr11:116711834-116712057(-)$1	223	172	176	12.0000
nnnn	chr9:62643739-62643978(-)$1	239	4	8	12.0000
FFOO	chr2:154471536-154471761(+)$1	225	57	61	12.0000
DDDD	chr6:67234073-67234311(+)$1	238	113	117	12.0000
$$$d	chr19:45231163-45231387(+)$1	224	123	127	12.0000
hhhh	chr11:75320067-75320288(+)$1	221	32	36	12.0000
dd]c	chr5:100464605-100464847(-)$1	242	102	106	12.0000
{CCC	chr4:133309423-133309670(-)$1	247	3	7	12.0000
EEE:	chr6:52154408-52154645(-)$1	237	110	114	12.0000
NNNN	chr2:26777405-26777637(-)$1	232	12	16	12.0000
!ddd	chr16:37883469-37883698(+)$1	229	63	67	12.0000
d[bb	chr4:136105000-136105228(+)$1	228	18	22	12.0000
dd[b	chr11:96136049-96136275(+)$1	226	11	15	12.0000
e!!b	chr11:69212905-69213138(-)$1	233	36	40	12.0000
b]bb	chr4:133308589-133308819(-)$1	230	99	103	12.0000
ffff	chr7:112784167-112784391(-)$1	224	17	21	12.0000
fCCC	chr5:130717172-130717409(+)$1	237	232	236	12.0000
bb%%	chr10:31328869-31329106(-)$1	237	8	12	12.0000
hhhh	chr5:145942660-145942884(+)$1	224	32	36	12.0000
EEEE	chr1:192995259-192995487(-)$1	228	117	121	12.0000
b]a]	chr15:80066235-80066461(+)$1	226	50	54	12.0000
]a::	chr5:100465408-100465636(-)$1	228	124	128	12.0000
eee[	chr2:155923851-155924098(-)$1	247	7	11	12.0000
eeee	chr7:129221965-129222228(+)$1	263	96	100	12.0000
C}BB	chr3:68819996-68820245(+)$1	249	237	241	12.0000
[ddd	chr8:112465007-112465233(+)$1	226	27	31	12.0000
====	chr2:162760636-162760862(+)$1	226	143	147	12.0000
]ccc	chr1:173268537-173268768(+)$1	231	166	170	12.0000
dd22	chr7:109168600-109168825(-)$1	225	115	119	12.0000
gggg	chr14:35227318-35227548(-)$1	230	221	225	12.0000
eee[	chr7:91764045-91764274(-)$1	229	128	132	12.0000
EEEE	chr11:94152534-94152764(-)$1	230	225	229	12.0000
ffff	chr11:69803430-69803660(+)$1	230	207	211	12.0000
dddd	chr10:79325996-79326220(+)$1	224	79	83	12.0000
eee!	chr14:8922918-8923139(+)$1	221	24	28	12.0000
LFFF	chr9:106740544-106740779(+)$1	235	41	45	12.0000
DD::	chr7:134168917-134169144(-)$1	227	222	226	12.0000
:::D	chr5:136386763-136387006(-)$1	243	66	70	12.0000
DDDM	chr8:109410787-109411017(-)$1	230	99	103	12.0000
HHHH	chr9:101004379-101004597(+)$1	218	165	169	12.0000
ffff	chr17:35380093-35380317(+)$1	224	94	98	12.0000
bb!!	chr13:112223725-112223954(-)$1	229	92	96	12.0000
GGGY	chr11:58752052-58752291(-)$1	239	175	179	12.0000
ffff	chr19:12843674-12843903(-)$1	229	34	38	12.0000
cc[c	chr13:31902216-31902440(+)$1	224	169	173	12.0000
ff44	chr8:98012165-98012394(-)$1	229	66	70	12.0000
dddd	chr2:34678228-34678455(-)$1	227	142	146	12.0000
CCKK	chrX:91497651-91497900(+)$1	249	112	116	12.0000
dddd	chr14:35558943-35559170(+)$1	227	126	130	12.0000
::::	chr8:46136560-46136804(+)$1	244	184	188	12.0000
ccbb	chrX:12869384-12869611(+)$1	227	12	16	12.0000
ddnn	chr19:6376326-6376547(+)$1	221	43	47	12.0000
ccc2	chr12:8716123-8716349(+)$1	226	32	36	12.0000
ffff	chr15:81654042-81654264(+)$1	222	85	89	12.0000
bb::	chr6:17587014-17587245(+)$1	231	124	128	12.0000
cc!!	chr16:20692458-20692689(+)$1	231	57	61	12.0000
reee	chr9:123370982-123371231(+)$1	249	69	73	12.0000
ddd!	chr19:10620133-10620357(+)$1	224	44	48	12.0000
dddd	chr2:34678139-34678390(-)$1	251	77	81	12.0000
ffff	chr10:36855702-36855948(-)$1	246	176	180	12.0000
pppp	chr5:100464491-100464722(-)$1	231	30	34	12.0000
D{FF	chr4:41604973-41605196(-)$1	223	56	60	12.0000
eee2	chr15:35002748-35002977(-)$1	229	136	140	12.0000
gggg	chr11:120825083-120825312(-)$1	229	167	171	12.0000
ccc]	chr11:97989541-97989768(-)$1	227	52	56	12.0000
dddd	chr2:155923912-155924165(-)$1	253	53	57	12.0000
BB::	chr5:136410152-136410381(-)$1	229	125	129	12.0000

#DB
)).)	chr4:147991490-147991721(-)$1	1	221	225	12.0000
((.(	chr11:69734692-69734922(-)$1	1	29	33	12.0000
((((	chr2:105524963-105525186(+)$1	1	76	80	12.0000
((.(	chr19:6376288-6376517(+)$1	1	21	25	12.0000
).))	chr13:54687080-54687306(-)$1	1	27	31	12.0000
))))	chr7:134704388-134704612(+)$1	1	104	108	12.0000
))).	chr11:116711834-116712057(-)$1	1	172	176	12.0000
....	chr9:62643739-62643978(-)$1	1	4	8	12.0000
((..	chr2:154471536-154471761(+)$1	1	57	61	12.0000
((((	chr6:67234073-67234311(+)$1	1	113	117	12.0000
...(	chr19:45231163-45231387(+)$1	1	123	127	12.0000
((((	chr11:75320067-75320288(+)$1	1	32	36	12.0000
)).)	chr5:100464605-100464847(-)$1	1	102	106	12.0000
.(((	chr4:133309423-133309670(-)$1	1	3	7	12.0000
(((.	chr6:52154408-52154645(-)$1	1	110	114	12.0000
....	chr2:26777405-26777637(-)$1	1	12	16	12.0000
.(((	chr16:37883469-37883698(+)$1	1	63	67	12.0000
(.((	chr4:136105000-136105228(+)$1	1	18	22	12.0000
((.(	chr11:96136049-96136275(+)$1	1	11	15	12.0000
(..(	chr11:69212905-69213138(-)$1	1	36	40	12.0000
).))	chr4:133308589-133308819(-)$1	1	99	103	12.0000
((((	chr7:112784167-112784391(-)$1	1	17	21	12.0000
))))	chr5:130717172-130717409(+)$1	1	232	236	12.0000
((..	chr10:31328869-31329106(-)$1	1	8	12	12.0000
((((	chr5:145942660-145942884(+)$1	1	32	36	12.0000
))))	chr1:192995259-192995487(-)$1	1	117	121	12.0000
).).	chr15:80066235-80066461(+)$1	1	50	54	12.0000
.)..	chr5:100465408-100465636(-)$1	1	124	128	12.0000
(((.	chr2:155923851-155924098(-)$1	1	7	11	12.0000
))))	chr7:129221965-129222228(+)$1	1	96	100	12.0000
).))	chr3:68819996-68820245(+)$1	1	237	241	12.0000
.(((	chr8:112465007-112465233(+)$1	1	27	31	12.0000
((((	chr2:162760636-162760862(+)$1	1	143	147	12.0000
.)))	chr1:173268537-173268768(+)$1	1	166	170	12.0000
))..	chr7:109168600-109168825(-)$1	1	115	119	12.0000
))))	chr14:35227318-35227548(-)$1	1	221	225	12.0000
(((.	chr7:91764045-91764274(-)$1	1	128	132	12.0000
))))	chr11:94152534-94152764(-)$1	1	225	229	12.0000
((((	chr11:69803430-69803660(+)$1	1	207	211	12.0000
((((	chr10:79325996-79326220(+)$1	1	79	83	12.0000
(((.	chr14:8922918-8923139(+)$1	1	24	28	12.0000
.(((	chr9:106740544-106740779(+)$1	1	41	45	12.0000
))..	chr7:134168917-134169144(-)$1	1	222	226	12.0000
...(	chr5:136386763-136387006(-)$1	1	66	70	12.0000
(((.	chr8:109410787-109411017(-)$1	1	99	103	12.0000
))))	chr9:101004379-101004597(+)$1	1	165	169	12.0000
))))	chr17:35380093-35380317(+)$1	1	94	98	12.0000
((..	chr13:112223725-112223954(-)$1	1	92	96	12.0000
))).	chr11:58752052-58752291(-)$1	1	175	179	12.0000
))))	chr19:12843674-12843903(-)$1	1	34	38	12.0000
((.(	chr13:31902216-31902440(+)$1	1	169	173	12.0000
))..	chr8:98012165-98012394(-)$1	1	66	70	12.0000
((((	chr2:34678228-34678455(-)$1	1	142	146	12.0000
((..	chrX:91497651-91497900(+)$1	1	112	116	12.0000
))))	chr14:35558943-35559170(+)$1	1	126	130	12.0000
....	chr8:46136560-46136804(+)$1	1	184	188	12.0000
((((	chrX:12869384-12869611(+)$1	1	12	16	12.0000
((..	chr19:6376326-6376547(+)$1	1	43	47	12.0000
))).	chr12:8716123-8716349(+)$1	1	32	36	12.0000
((((	chr15:81654042-81654264(+)$1	1	85	89	12.0000
))..	chr6:17587014-17587245(+)$1	1	124	128	12.0000
((..	chr16:20692458-20692689(+)$1	1	57	61	12.0000
.)))	chr9:123370982-123371231(+)$1	1	69	73	12.0000
(((.	chr19:10620133-10620357(+)$1	1	44	48	12.0000
((((	chr2:34678139-34678390(-)$1	1	77	81	12.0000
((((	chr10:36855702-36855948(-)$1	1	176	180	12.0000
....	chr5:100464491-100464722(-)$1	1	30	34	12.0000
(.((	chr4:41604973-41605196(-)$1	1	56	60	12.0000
))).	chr15:35002748-35002977(-)$1	1	136	140	12.0000
))))	chr11:120825083-120825312(-)$1	1	167	171	12.0000
))).	chr11:97989541-97989768(-)$1	1	52	56	12.0000
((((	chr2:155923912-155924165(-)$1	1	53	57	12.0000
))..	chr5:136410152-136410381(-)$1	1	125	129	12.0000

#PSSM
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	876.0000000000006
#seq	73
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_Rbm3_Liu2013_mm9_CDS_m1_run1.nuc.txt

#NT
AGCUG	chr6:56678103-56678327(+)$1	224	8	13	15.0000
AGCUG	chr4:125857458-125857686(-)$1	228	66	71	15.0000
AGCUG	chr2:152239638-152239866(-)$1	228	44	49	15.0000
AGCUG	chr3:16104147-16104394(+)$1	247	145	150	15.0000
AGCUG	chr7:52068308-52068536(-)$1	228	130	135	15.0000
AGCUG	chr16:91656419-91656694(+)$1	275	18	23	15.0000
AGCUG	chr7:134338158-134338383(-)$1	225	102	107	15.0000
AGCUG	chr6:113397251-113397479(+)$1	228	26	31	15.0000
AGCUG	chr5:31822537-31822761(-)$1	224	4	9	15.0000
AGCUG	chr13:54839189-54839425(-)$1	236	110	115	15.0000
AGCUG	chr17:35972056-35972282(-)$1	226	73	78	15.0000
AGCUG	chr4:131429637-131429856(+)$1	219	25	30	15.0000
AGCUG	chr2:152137407-152137636(+)$1	229	67	72	15.0000
AGCUG	chr14:22489490-22489729(+)$1	239	184	189	15.0000
AGCUG	chr2:119119907-119120134(+)$1	227	55	60	15.0000
AGCUG	chr5:24071588-24071818(-)$1	230	85	90	15.0000
AGCUG	chr2:153057193-153057430(-)$1	237	43	48	15.0000
AGCUG	chr8:112080243-112080466(-)$1	223	76	81	15.0000
AGCUG	chr2:90746100-90746343(+)$1	243	83	88	15.0000
AGCUG	chr8:24050198-24050432(+)$1	234	164	169	15.0000
AGCUG	chr9:44143015-44143250(+)$1	235	22	27	15.0000
AGCUG	chr7:134168917-134169144(-)$1	227	2	7	15.0000
AGCUG	chr1:163020473-163020695(-)$1	222	205	210	15.0000
AGCUG	chr2:83720440-83720667(+)$1	227	175	180	15.0000
AGCUG	chr8:127420862-127421104(-)$1	242	146	151	15.0000
AGCUG	chr2:50987731-50987960(-)$1	229	129	134	15.0000
AGCUG	chr19:37294797-37295018(+)$1	221	33	38	15.0000
AGCUG	chr10:60235035-60235261(-)$1	226	151	156	15.0000
AGCUG	chr3:9251498-9251728(+)$1	230	106	111	15.0000
AGCUG	chr9:106740544-106740779(+)$1	235	107	112	15.0000
AGCUG	chr2:34630984-34631236(+)$1	252	219	224	15.0000
AGCUG	chr16:91656645-91656874(+)$1	229	19	24	15.0000
AGCUG	chr1:93698471-93698709(+)$1	238	54	59	15.0000
AGCUG	chr7:134342519-134342742(-)$1	223	98	103	15.0000
AGCUG	chr16:91657791-91658014(+)$1	223	98	103	15.0000
agcug	chr11:69794891-69795121(+)$1	230	47	52	15.0000
AGCUG	chr7:135586035-135586259(-)$1	224	26	31	15.0000
AGCUG	chr15:50677543-50677773(-)$1	230	62	67	15.0000
AGCUG	chr17:28954423-28954648(+)$1	225	65	70	15.0000
AGCUG	chr10:80367846-80368072(-)$1	226	46	51	15.0000
AGCUG	chr12:88614548-88614790(+)$1	242	43	48	15.0000
AGCUG	chr14:22805432-22805657(-)$1	225	53	58	15.0000
AGCUG	chr7:125386618-125386844(-)$1	226	103	108	15.0000
AGCUG	chr11:24063509-24063736(+)$1	227	110	115	15.0000
AGCUG	chr1:58504579-58504804(+)$1	225	59	64	15.0000
AGCUG	chr7:134072597-134072822(+)$1	225	101	106	15.0000
AGCUG	chr9:108110030-108110256(-)$1	226	165	170	15.0000
AGCUG	chr9:101004207-101004443(+)$1	236	76	81	15.0000

#otherMatches

#Struct PSSM
::eee	chr1:166387799-166388028(-)$1	229	70	75	15.0000
:::::	chr6:56678103-56678327(+)$1	224	8	13	15.0000
D{EEE	chr4:125857458-125857686(-)$1	228	66	71	15.0000
]dddd	chr2:152239638-152239866(-)$1	228	44	49	15.0000
FFFFF	chr3:16104147-16104394(+)$1	247	145	150	15.0000
ssccc	chr7:52068308-52068536(-)$1	228	130	135	15.0000
KDDDD	chr16:91656419-91656694(+)$1	275	18	23	15.0000
::bbg	chr7:134338158-134338383(-)$1	225	102	107	15.0000
ooodd	chr6:113397251-113397479(+)$1	228	26	31	15.0000
eeee!	chr5:31822537-31822761(-)$1	224	4	9	15.0000
a]bb]	chr13:54839189-54839425(-)$1	236	110	115	15.0000
mmmmd	chr17:35972056-35972282(-)$1	226	73	78	15.0000
KKBBE	chr4:131429637-131429856(+)$1	219	25	30	15.0000
edddd	chr2:152137407-152137636(+)$1	229	67	72	15.0000
cc]gg	chr14:22489490-22489729(+)$1	239	184	189	15.0000
EEEEd	chr2:119119907-119120134(+)$1	227	55	60	15.0000
FFFDD	chr5:24071588-24071818(-)$1	230	85	90	15.0000
cccff	chr2:153057193-153057430(-)$1	237	43	48	15.0000
:CCCK	chr8:112080243-112080466(-)$1	223	76	81	15.0000
ddddm	chr2:90746100-90746343(+)$1	243	83	88	15.0000
:GGGG	chr8:24050198-24050432(+)$1	234	164	169	15.0000
FLLLF	chr9:44143015-44143250(+)$1	235	22	27	15.0000
:DDDD	chr7:134168917-134169144(-)$1	227	2	7	15.0000
JJJJJ	chr1:163020473-163020695(-)$1	222	205	210	15.0000
ddddo	chr2:83720440-83720667(+)$1	227	175	180	15.0000
:::bb	chr8:127420862-127421104(-)$1	242	146	151	15.0000
3dddd	chr2:50987731-50987960(-)$1	229	129	134	15.0000
ffa##	chr19:37294797-37295018(+)$1	221	33	38	15.0000
eee[c	chr10:60235035-60235261(-)$1	226	151	156	15.0000
66666	chr3:9251498-9251728(+)$1	230	106	111	15.0000
33hhh	chr9:106740544-106740779(+)$1	235	107	112	15.0000
ccc::	chr2:34630984-34631236(+)$1	252	219	224	15.0000
offff	chr16:91656645-91656874(+)$1	229	19	24	15.0000
###cc	chr1:93698471-93698709(+)$1	238	54	59	15.0000
{DDDD	chr7:134342519-134342742(-)$1	223	98	103	15.0000
qqqqq	chr16:91657791-91658014(+)$1	223	98	103	15.0000
MMMMI	chr11:69794891-69795121(+)$1	230	47	52	15.0000
:::::	chr7:135586035-135586259(-)$1	224	26	31	15.0000
Egggg	chr15:50677543-50677773(-)$1	230	62	67	15.0000
EEEEE	chr17:28954423-28954648(+)$1	225	65	70	15.0000
lgggg	chr10:80367846-80368072(-)$1	226	46	51	15.0000
cc22c	chr12:88614548-88614790(+)$1	242	43	48	15.0000
DD{EE	chr14:22805432-22805657(-)$1	225	53	58	15.0000
3ccc]	chr7:125386618-125386844(-)$1	226	103	108	15.0000
hffff	chr11:24063509-24063736(+)$1	227	110	115	15.0000
e333c	chr1:58504579-58504804(+)$1	225	59	64	15.0000
tdddd	chr7:134072597-134072822(+)$1	225	101	106	15.0000
:dddd	chr9:108110030-108110256(-)$1	226	165	170	15.0000
:eeee	chr9:101004207-101004443(+)$1	236	76	81	15.0000

#DB
..(((	chr1:166387799-166388028(-)$1	1	70	75	15.0000
.....	chr6:56678103-56678327(+)$1	1	8	13	15.0000
(.(((	chr4:125857458-125857686(-)$1	1	66	71	15.0000
.))))	chr2:152239638-152239866(-)$1	1	44	49	15.0000
)))))	chr3:16104147-16104394(+)$1	1	145	150	15.0000
..)))	chr7:52068308-52068536(-)$1	1	130	135	15.0000
.((((	chr16:91656419-91656694(+)$1	1	18	23	15.0000
..(((	chr7:134338158-134338383(-)$1	1	102	107	15.0000
...))	chr6:113397251-113397479(+)$1	1	26	31	15.0000
((((.	chr5:31822537-31822761(-)$1	1	4	9	15.0000
).)).	chr13:54839189-54839425(-)$1	1	110	115	15.0000
....)	chr17:35972056-35972282(-)$1	1	73	78	15.0000
..(((	chr4:131429637-131429856(+)$1	1	25	30	15.0000
)((((	chr2:152137407-152137636(+)$1	1	67	72	15.0000
)).))	chr14:22489490-22489729(+)$1	1	184	189	15.0000
(((((	chr2:119119907-119120134(+)$1	1	55	60	15.0000
(((((	chr5:24071588-24071818(-)$1	1	85	90	15.0000
(((((	chr2:153057193-153057430(-)$1	1	43	48	15.0000
.(((.	chr8:112080243-112080466(-)$1	1	76	81	15.0000
((((.	chr2:90746100-90746343(+)$1	1	83	88	15.0000
.))))	chr8:24050198-24050432(+)$1	1	164	169	15.0000
(...(	chr9:44143015-44143250(+)$1	1	22	27	15.0000
.((((	chr7:134168917-134169144(-)$1	1	2	7	15.0000
)))))	chr1:163020473-163020695(-)$1	1	205	210	15.0000
((((.	chr2:83720440-83720667(+)$1	1	175	180	15.0000
...((	chr8:127420862-127421104(-)$1	1	146	151	15.0000
.))))	chr2:50987731-50987960(-)$1	1	129	134	15.0000
(((..	chr19:37294797-37295018(+)$1	1	33	38	15.0000
(((.(	chr10:60235035-60235261(-)$1	1	151	156	15.0000
.....	chr3:9251498-9251728(+)$1	1	106	111	15.0000
..)))	chr9:106740544-106740779(+)$1	1	107	112	15.0000
)))..	chr2:34630984-34631236(+)$1	1	219	224	15.0000
.))))	chr16:91656645-91656874(+)$1	1	19	24	15.0000
...((	chr1:93698471-93698709(+)$1	1	54	59	15.0000
.((((	chr7:134342519-134342742(-)$1	1	98	103	15.0000
.....	chr16:91657791-91658014(+)$1	1	98	103	15.0000
....(	chr11:69794891-69795121(+)$1	1	47	52	15.0000
.....	chr7:135586035-135586259(-)$1	1	26	31	15.0000
(((((	chr15:50677543-50677773(-)$1	1	62	67	15.0000
(((((	chr17:28954423-28954648(+)$1	1	65	70	15.0000
.))))	chr10:80367846-80368072(-)$1	1	46	51	15.0000
))..)	chr12:88614548-88614790(+)$1	1	43	48	15.0000
((.((	chr14:22805432-22805657(-)$1	1	53	58	15.0000
.))).	chr7:125386618-125386844(-)$1	1	103	108	15.0000
)((((	chr11:24063509-24063736(+)$1	1	110	115	15.0000
)...)	chr1:58504579-58504804(+)$1	1	59	64	15.0000
.))))	chr7:134072597-134072822(+)$1	1	101	106	15.0000
.((((	chr9:108110030-108110256(-)$1	1	165	170	15.0000
.((((	chr9:101004207-101004443(+)$1	1	76	81	15.0000

#PSSM
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	735.0000000000001
#seq	49
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_UTR_m1_run2.nuc.txt

#NT
cuuuu	chr9:123370870-123371092(+)$1	222	167	172	14.9999
CUUUU	chr11:75314212-75314426(+)$1	214	72	77	14.9999
CUUUU	chr19:60600640-60600855(-)$1	215	13	18	14.9999
CUUUU	chr18:44581856-44582100(+)$1	244	170	175	14.9999
Cuuuu	chr11:77525325-77525544(+)$1	219	132	137	14.9999
cuuuu	chr2:168575422-168575646(-)$1	224	211	216	14.9999
CUUUU	chr14:57343181-57343398(-)$1	217	95	100	14.9999
cuuuu	chr9:123370975-123371189(+)$1	214	62	67	14.9999
cuuuu	chr7:117203181-117203412(-)$1	231	119	124	14.9999
CUUUU	chr2:138112851-138113067(+)$1	216	65	70	14.9999
CUUUU	chr10:52156852-52157071(+)$1	219	29	34	14.9999
CUUUU	chr10:117261600-117261811(-)$1	211	187	192	14.9999
cuuuu	chr9:123371013-123371249(+)$1	236	24	29	14.9999
CUUUU	chr4:21752034-21752251(+)$1	217	22	27	14.9999
CUUUU	chr12:17557551-17557785(+)$1	234	208	213	14.9999
CUUUU	chr14:31934173-31934392(+)$1	219	103	108	14.9999
CUUUU	chr2:60085846-60086065(+)$1	219	70	75	14.9999
CUUUU	chr11:106642521-106642738(-)$1	217	208	213	14.9999
CUUUU	chr7:138043986-138044199(+)$1	213	18	23	14.9999
CUUUU	chr1:133829958-133830176(+)$1	218	59	64	14.9999
CUUUU	chr15:12189229-12189447(+)$1	218	76	81	14.9999
CUUUU	chr3:36938131-36938349(+)$1	218	11	16	14.9999
CUUUU	chr1:173150140-173150360(-)$1	220	14	19	14.9999
CUUUU	chr19:5901137-5901353(-)$1	216	64	69	14.9999
CUUUU	chr1:38235021-38235241(-)$1	220	69	74	14.9999
CUUUU	chr7:148195463-148195681(-)$1	218	205	210	14.9999
CUUUU	chr2:117097098-117097309(+)$1	211	110	115	14.9999
CUUUU	chrX:101155600-101155816(-)$1	216	48	53	14.9999
CUUUU	chr11:74491024-74491235(-)$1	211	90	95	14.9999
cuuuu	chr9:123370900-123371136(+)$1	236	137	142	14.9999
cuuuu	chr7:117203262-117203483(-)$1	221	190	195	14.9999
CUUUU	chr5:111093465-111093681(-)$1	216	9	14	14.9999
CUUUU	chrX:160390639-160390857(-)$1	218	95	100	14.9999
CUUUU	chr4:138847248-138847465(+)$1	217	59	64	14.9999
CUUUU	chr5:28535781-28535993(-)$1	212	162	167	14.9999
CUUUU	chr5:123905354-123905571(+)$1	217	97	102	14.9999
CUUUU	chr11:20124759-20124972(+)$1	213	103	108	14.9999
CUUUU	chr18:46767914-46768129(+)$1	215	78	83	14.9999
CUUUU	chr16:31095240-31095458(-)$1	218	182	187	14.9999
CUUUU	chr3:68820482-68820705(+)$1	223	17	22	14.9999
CUUUU	chr6:122268535-122268758(-)$1	223	80	85	14.9999
CUUUU	chr4:94609925-94610134(-)$1	209	7	12	14.9999
CUUUU	chr6:30606454-30606673(-)$1	219	57	62	14.9999
CUUUU	chr14:58232022-58232244(-)$1	222	103	108	14.9999
CUUUU	chr1:58462836-58463050(+)$1	214	121	126	14.9999
CUUUU	chr8:109895892-109896110(+)$1	218	88	93	14.9999
cuuuu	chr7:117203116-117203359(-)$1	243	66	71	14.9999
CUUUU	chr6:52496478-52496697(-)$1	219	15	20	14.9999
CUUUU	chr7:30808704-30808928(+)$1	224	170	175	14.9999
CUUUU	chrX:39629201-39629413(+)$1	212	195	200	14.9999
CUUUU	chr5:125367524-125367744(+)$1	220	100	105	14.9999
CUUUU	chr6:146547112-146547328(+)$1	216	19	24	14.9999

#otherMatches

#Struct PSSM
hhhh:	chr11:79846243-79846457(+)$1	214	82	87	14.9999
CCCZZ	chr9:123370870-123371092(+)$1	222	167	172	14.9999
::::e	chr11:75314212-75314426(+)$1	214	72	77	14.9999
b:FFF	chr19:60600640-60600855(-)$1	215	13	18	14.9999
iiiii	chr18:44581856-44582100(+)$1	244	170	175	14.9999
:::::	chr11:77525325-77525544(+)$1	219	132	137	14.9999
:::::	chr2:168575422-168575646(-)$1	224	211	216	14.9999
c]ggg	chr14:57343181-57343398(-)$1	217	95	100	14.9999
aeeee	chr9:123370975-123371189(+)$1	214	62	67	14.9999
chhhh	chr7:117203181-117203412(-)$1	231	119	124	14.9999
dddww	chr2:138112851-138113067(+)$1	216	65	70	14.9999
###bb	chr10:52156852-52157071(+)$1	219	29	34	14.9999
eee55	chr10:117261600-117261811(-)$1	211	187	192	14.9999
aeeee	chr9:123371013-123371249(+)$1	236	24	29	14.9999
eeee!	chr4:21752034-21752251(+)$1	217	22	27	14.9999
]ffff	chr12:17557551-17557785(+)$1	234	208	213	14.9999
eeeel	chr14:31934173-31934392(+)$1	219	103	108	14.9999
eeeee	chr2:60085846-60086065(+)$1	219	70	75	14.9999
GGGGG	chr11:106642521-106642738(-)$1	217	208	213	14.9999
nnnnn	chr7:138043986-138044199(+)$1	213	18	23	14.9999
eeee$	chr1:133829958-133830176(+)$1	218	59	64	14.9999
:::::	chr15:12189229-12189447(+)$1	218	76	81	14.9999
f[bbq	chr3:36938131-36938349(+)$1	218	11	16	14.9999
+++++	chr1:173150140-173150360(-)$1	220	14	19	14.9999
(((((	chr19:5901137-5901353(-)$1	216	64	69	14.9999
cc!!c	chr1:38235021-38235241(-)$1	220	69	74	14.9999
:::::	chr7:148195463-148195681(-)$1	218	205	210	14.9999
eee::	chr2:117097098-117097309(+)$1	211	110	115	14.9999
ooooo	chrX:101155600-101155816(-)$1	216	48	53	14.9999
xxxxx	chr11:74491024-74491235(-)$1	211	90	95	14.9999
aeeee	chr9:123370900-123371136(+)$1	236	137	142	14.9999
CYYDD	chr7:117203262-117203483(-)$1	221	190	195	14.9999
bb[ff	chr5:111093465-111093681(-)$1	216	9	14	14.9999
rrrrr	chrX:160390639-160390857(-)$1	218	95	100	14.9999
:gggg	chr4:138847248-138847465(+)$1	217	59	64	14.9999
ddd22	chr5:28535781-28535993(-)$1	212	162	167	14.9999
DFFFF	chr5:123905354-123905571(+)$1	217	97	102	14.9999
cc:::	chr11:20124759-20124972(+)$1	213	103	108	14.9999
ddd22	chr18:46767914-46768129(+)$1	215	78	83	14.9999
}DDDD	chr16:31095240-31095458(-)$1	218	182	187	14.9999
EEEEE	chr3:68820482-68820705(+)$1	223	17	22	14.9999
fffff	chr6:122268535-122268758(-)$1	223	80	85	14.9999
:ffff	chr4:94609925-94610134(-)$1	209	7	12	14.9999
ccc""	chr6:30606454-30606673(-)$1	219	57	62	14.9999
iiiii	chr14:58232022-58232244(-)$1	222	103	108	14.9999
ee(((	chr1:58462836-58463050(+)$1	214	121	126	14.9999
::::i	chr8:109895892-109896110(+)$1	218	88	93	14.9999
chhhh	chr7:117203116-117203359(-)$1	243	66	71	14.9999
&&&&f	chr6:52496478-52496697(-)$1	219	15	20	14.9999
cmmmm	chr7:30808704-30808928(+)$1	224	170	175	14.9999
88ddd	chrX:39629201-39629413(+)$1	212	195	200	14.9999
JJJJJ	chr5:125367524-125367744(+)$1	220	100	105	14.9999
b&&&&	chr6:146547112-146547328(+)$1	216	19	24	14.9999

#DB
)))).	chr11:79846243-79846457(+)$1	1	82	87	14.9999
)))..	chr9:123370870-123371092(+)$1	1	167	172	14.9999
....(	chr11:75314212-75314426(+)$1	1	72	77	14.9999
).(((	chr19:60600640-60600855(-)$1	1	13	18	14.9999
)))))	chr18:44581856-44582100(+)$1	1	170	175	14.9999
.....	chr11:77525325-77525544(+)$1	1	132	137	14.9999
.....	chr2:168575422-168575646(-)$1	1	211	216	14.9999
).)))	chr14:57343181-57343398(-)$1	1	95	100	14.9999
(((((	chr9:123370975-123371189(+)$1	1	62	67	14.9999
)))))	chr7:117203181-117203412(-)$1	1	119	124	14.9999
(((..	chr2:138112851-138113067(+)$1	1	65	70	14.9999
...((	chr10:52156852-52157071(+)$1	1	29	34	14.9999
)))..	chr10:117261600-117261811(-)$1	1	187	192	14.9999
(((((	chr9:123371013-123371249(+)$1	1	24	29	14.9999
((((.	chr4:21752034-21752251(+)$1	1	22	27	14.9999
.))))	chr12:17557551-17557785(+)$1	1	208	213	14.9999
((((.	chr14:31934173-31934392(+)$1	1	103	108	14.9999
)))))	chr2:60085846-60086065(+)$1	1	70	75	14.9999
)))))	chr11:106642521-106642738(-)$1	1	208	213	14.9999
.....	chr7:138043986-138044199(+)$1	1	18	23	14.9999
((((.	chr1:133829958-133830176(+)$1	1	59	64	14.9999
.....	chr15:12189229-12189447(+)$1	1	76	81	14.9999
(.((.	chr3:36938131-36938349(+)$1	1	11	16	14.9999
.....	chr1:173150140-173150360(-)$1	1	14	19	14.9999
.....	chr19:5901137-5901353(-)$1	1	64	69	14.9999
((..(	chr1:38235021-38235241(-)$1	1	69	74	14.9999
.....	chr7:148195463-148195681(-)$1	1	205	210	14.9999
)))..	chr2:117097098-117097309(+)$1	1	110	115	14.9999
.....	chrX:101155600-101155816(-)$1	1	48	53	14.9999
.....	chr11:74491024-74491235(-)$1	1	90	95	14.9999
(((((	chr9:123370900-123371136(+)$1	1	137	142	14.9999
)..))	chr7:117203262-117203483(-)$1	1	190	195	14.9999
((.((	chr5:111093465-111093681(-)$1	1	9	14	14.9999
.....	chrX:160390639-160390857(-)$1	1	95	100	14.9999
.((((	chr4:138847248-138847465(+)$1	1	59	64	14.9999
)))..	chr5:28535781-28535993(-)$1	1	162	167	14.9999
)))))	chr5:123905354-123905571(+)$1	1	97	102	14.9999
))...	chr11:20124759-20124972(+)$1	1	103	108	14.9999
)))..	chr18:46767914-46768129(+)$1	1	78	83	14.9999
.))))	chr16:31095240-31095458(-)$1	1	182	187	14.9999
(((((	chr3:68820482-68820705(+)$1	1	17	22	14.9999
(((((	chr6:122268535-122268758(-)$1	1	80	85	14.9999
.((((	chr4:94609925-94610134(-)$1	1	7	12	14.9999
(((..	chr6:30606454-30606673(-)$1	1	57	62	14.9999
(((((	chr14:58232022-58232244(-)$1	1	103	108	14.9999
((...	chr1:58462836-58463050(+)$1	1	121	126	14.9999
....(	chr8:109895892-109896110(+)$1	1	88	93	14.9999
)))))	chr7:117203116-117203359(-)$1	1	66	71	14.9999
....(	chr6:52496478-52496697(-)$1	1	15	20	14.9999
(....	chr7:30808704-30808928(+)$1	1	170	175	14.9999
..)))	chrX:39629201-39629413(+)$1	1	195	200	14.9999
)))))	chr5:125367524-125367744(+)$1	1	100	105	14.9999
(....	chr6:146547112-146547328(+)$1	1	19	24	14.9999

#PSSM
C : 0.84	c : 0.15	
U : 0.83	u : 0.16	
U : 0.83	u : 0.16	
U : 0.83	u : 0.16	
U : 0.83	u : 0.16	

#score	794.9999999999999
#seq	53
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_UTR_m2_run2.nuc.txt

#NT
ucug	chr7:117203262-117203483(-)$1	221	120	124	12.0000
UCUG	chr10:60895372-60895590(-)$1	218	3	7	12.0000
UCUG	chr19:46452639-46452857(-)$1	218	23	27	12.0000
UCUG	chr16:91671953-91672177(+)$1	224	78	82	12.0000
UCUG	chr9:31206703-31206926(+)$1	223	124	128	12.0000
UCUG	chr11:116711164-116711390(-)$1	226	109	113	12.0000
UCUG	chr11:74491024-74491235(-)$1	211	99	103	12.0000
UCUG	chr11:93806236-93806450(+)$1	214	139	143	12.0000
UCUG	chr5:45916365-45916578(+)$1	213	19	23	12.0000
UCUG	chr9:113885064-113885275(+)$1	211	140	144	12.0000
UCUG	chr1:33834498-33834722(-)$1	224	195	199	12.0000
UCUG	chr16:32020088-32020306(-)$1	218	112	116	12.0000
UCUG	chr5:124819055-124819269(-)$1	214	35	39	12.0000
UCUG	chr11:101350969-101351182(-)$1	213	35	39	12.0000
UCUG	chr4:62050137-62050347(+)$1	210	71	75	12.0000
UCUG	chr2:60085846-60086065(+)$1	219	23	27	12.0000
ucug	chr7:117203181-117203412(-)$1	231	49	53	12.0000
UCUG	chr10:62269441-62269661(-)$1	220	109	113	12.0000
UCUG	chr11:77994745-77994964(-)$1	219	96	100	12.0000
UCUG	chr10:77526262-77526478(+)$1	216	6	10	12.0000
UCUG	chr17:23957127-23957339(+)$1	212	25	29	12.0000
UCUG	chr1:74442775-74443003(+)$1	228	221	225	12.0000
UCUG	chr16:58468280-58468497(+)$1	217	140	144	12.0000
UCUG	chr5:123905354-123905571(+)$1	217	107	111	12.0000
UCUG	chr3:100488777-100488988(-)$1	211	1	5	12.0000
UCUG	chr3:99942193-99942411(-)$1	218	5	9	12.0000
UCUG	chr11:102024542-102024752(-)$1	210	27	31	12.0000
UCUG	chr6:65030400-65030610(+)$1	210	201	205	12.0000
UCUG	chr14:35157175-35157390(+)$1	215	4	8	12.0000
UCUG	chr6:82675203-82675432(-)$1	229	35	39	12.0000
UCUG	chr11:79846243-79846457(+)$1	214	185	189	12.0000
UCUG	chr6:87793733-87793945(-)$1	212	71	75	12.0000
UCUG	chr7:108971176-108971396(-)$1	220	16	20	12.0000
UCUG	chr13:100191584-100191796(-)$1	212	13	17	12.0000
UCUG	chr5:76052588-76052799(+)$1	211	91	95	12.0000
UCUG	chr14:56167650-56167874(+)$1	224	24	28	12.0000
UCUG	chr15:98761881-98762096(-)$1	215	42	46	12.0000
UCUG	chr1:63360312-63360529(-)$1	217	10	14	12.0000
UCUG	chr8:89384812-89385022(+)$1	210	9	13	12.0000
UCUG	chr17:46820676-46820889(-)$1	213	21	25	12.0000
UCUG	chr10:57236544-57236759(-)$1	215	40	44	12.0000
UCUG	chr17:23957068-23957282(+)$1	214	84	88	12.0000
UCUG	chr4:116371938-116372149(+)$1	211	75	79	12.0000
UCUG	chr13:6647808-6648026(-)$1	218	78	82	12.0000
UCUG	chr19:46150410-46150625(+)$1	215	171	175	12.0000
UCUG	chr4:128877968-128878178(+)$1	210	32	36	12.0000
UCUG	chr6:51411132-51411347(-)$1	215	54	58	12.0000
ucug	chr1:38235021-38235241(-)$1	220	117	121	12.0000
UCUG	chr9:110842413-110842644(-)$1	231	92	96	12.0000
UCUG	chr10:60895482-60895692(-)$1	210	105	109	12.0000
UCUG	chr7:28066309-28066527(+)$1	218	80	84	12.0000
UCUG	chr11:75315974-75316190(+)$1	216	196	200	12.0000
UCUG	chr16:16983452-16983676(+)$1	224	108	112	12.0000
UCUG	chr9:58100967-58101180(+)$1	213	118	122	12.0000
UCUG	chr6:117875281-117875495(+)$1	214	0	4	12.0000
ucug	chr16:13814117-13814336(+)$1	219	40	44	12.0000
UCUG	chr19:15979991-15980207(-)$1	216	64	68	12.0000
UCUG	chr3:58326589-58326800(-)$1	211	135	139	12.0000
UCUG	chr3:86590505-86590717(-)$1	212	29	33	12.0000
ucug	chr7:117203223-117203443(-)$1	220	80	84	12.0000
UCUG	chr19:5901137-5901353(-)$1	216	48	52	12.0000
UCUG	chr9:123371160-123371375(+)$1	215	188	192	12.0000
ucug	chr2:177296260-177296481(+)$1	221	40	44	12.0000
UCUG	chr7:133272998-133273215(-)$1	217	188	192	12.0000
UCUG	chr9:54759717-54759934(+)$1	217	61	65	12.0000
UCUG	chr9:110842449-110842658(-)$1	209	106	110	12.0000
UCUG	chr19:3893717-3893934(+)$1	217	116	120	12.0000
UCUG	chr19:42024022-42024232(-)$1	210	13	17	12.0000
UCUG	chr2:113588454-113588664(+)$1	210	103	107	12.0000
UCUG	chr1:133829958-133830176(+)$1	218	35	39	12.0000
UCUG	chr1:192769996-192770209(+)$1	213	158	162	12.0000
UCUG	chr5:110791441-110791661(-)$1	220	83	87	12.0000
UCUG	chr11:53234058-53234274(+)$1	216	9	13	12.0000
UCUG	chr9:123371138-123371353(+)$1	215	210	214	12.0000
UCUG	chr9:65891998-65892218(+)$1	220	41	45	12.0000
UCUG	chr19:46729792-46730005(+)$1	213	27	31	12.0000
UCUG	chr18:36458525-36458744(+)$1	219	38	42	12.0000
ucug	chr9:123371013-123371249(+)$1	236	18	22	12.0000
UCUG	chrX:39628377-39628596(+)$1	219	104	108	12.0000
UCUG	chr3:97477294-97477512(+)$1	218	40	44	12.0000

#otherMatches

#Struct PSSM
wwwg	chr11:20124759-20124972(+)$1	213	91	95	12.0000
hhhh	chr7:117203262-117203483(-)$1	221	120	124	12.0000
!!cc	chr10:60895372-60895590(-)$1	218	3	7	12.0000
))))	chr19:46452639-46452857(-)$1	218	23	27	12.0000
dddd	chr16:91671953-91672177(+)$1	224	78	82	12.0000
gggg	chr9:31206703-31206926(+)$1	223	124	128	12.0000
888e	chr11:116711164-116711390(-)$1	226	109	113	12.0000
xxxc	chr11:74491024-74491235(-)$1	211	99	103	12.0000
hhhh	chr11:93806236-93806450(+)$1	214	139	143	12.0000
::GG	chr5:45916365-45916578(+)$1	213	19	23	12.0000
]eee	chr9:113885064-113885275(+)$1	211	140	144	12.0000
:ccc	chr1:33834498-33834722(-)$1	224	195	199	12.0000
::FF	chr16:32020088-32020306(-)$1	218	112	116	12.0000
MMMM	chr5:124819055-124819269(-)$1	214	35	39	12.0000
3fff	chr11:101350969-101351182(-)$1	213	35	39	12.0000
DDD{	chr4:62050137-62050347(+)$1	210	71	75	12.0000
C{CC	chr2:60085846-60086065(+)$1	219	23	27	12.0000
lccc	chr7:117203181-117203412(-)$1	231	49	53	12.0000
eee#	chr10:62269441-62269661(-)$1	220	109	113	12.0000
ccc[	chr11:77994745-77994964(-)$1	219	96	100	12.0000
D::c	chr10:77526262-77526478(+)$1	216	6	10	12.0000
JJJJ	chr17:23957127-23957339(+)$1	212	25	29	12.0000
ggg:	chr1:74442775-74443003(+)$1	228	221	225	12.0000
dddd	chr16:58468280-58468497(+)$1	217	140	144	12.0000
DDD{	chr5:123905354-123905571(+)$1	217	107	111	12.0000
DDDE	chr3:100488777-100488988(-)$1	211	1	5	12.0000
gggg	chr3:99942193-99942411(-)$1	218	5	9	12.0000
eedd	chr11:102024542-102024752(-)$1	210	27	31	12.0000
mmee	chr6:65030400-65030610(+)$1	210	201	205	12.0000
ggg[	chr14:35157175-35157390(+)$1	215	4	8	12.0000
ff[b	chr6:82675203-82675432(-)$1	229	35	39	12.0000
__HH	chr11:79846243-79846457(+)$1	214	185	189	12.0000
"""d	chr6:87793733-87793945(-)$1	212	71	75	12.0000
DDDD	chr7:108971176-108971396(-)$1	220	16	20	12.0000
BBB{	chr13:100191584-100191796(-)$1	212	13	17	12.0000
ff[b	chr5:76052588-76052799(+)$1	211	91	95	12.0000
ssss	chr14:56167650-56167874(+)$1	224	24	28	12.0000
MMMF	chr15:98761881-98762096(-)$1	215	42	46	12.0000
LFFF	chr1:63360312-63360529(-)$1	217	10	14	12.0000
ccc[	chr8:89384812-89385022(+)$1	210	9	13	12.0000
^^^^	chr17:46820676-46820889(-)$1	213	21	25	12.0000
::II	chr10:57236544-57236759(-)$1	215	40	44	12.0000
eee:	chr17:23957068-23957282(+)$1	214	84	88	12.0000
gggg	chr4:116371938-116372149(+)$1	211	75	79	12.0000
ffff	chr13:6647808-6648026(-)$1	218	78	82	12.0000
gccc	chr19:46150410-46150625(+)$1	215	171	175	12.0000
""dd	chr4:128877968-128878178(+)$1	210	32	36	12.0000
ddd:	chr6:51411132-51411347(-)$1	215	54	58	12.0000
c22b	chr1:38235021-38235241(-)$1	220	117	121	12.0000
eeee	chr9:110842413-110842644(-)$1	231	92	96	12.0000
!!cc	chr10:60895482-60895692(-)$1	210	105	109	12.0000
dd[c	chr7:28066309-28066527(+)$1	218	80	84	12.0000
oodd	chr11:75315974-75316190(+)$1	216	196	200	12.0000
]ccc	chr16:16983452-16983676(+)$1	224	108	112	12.0000
d]ee	chr9:58100967-58101180(+)$1	213	118	122	12.0000
FFFF	chr6:117875281-117875495(+)$1	214	0	4	12.0000
ddda	chr16:13814117-13814336(+)$1	219	40	44	12.0000
#bb!	chr19:15979991-15980207(-)$1	216	64	68	12.0000
$$$b	chr3:58326589-58326800(-)$1	211	135	139	12.0000
====	chr3:86590505-86590717(-)$1	212	29	33	12.0000
lllc	chr7:117203223-117203443(-)$1	220	80	84	12.0000
dd[a	chr19:5901137-5901353(-)$1	216	48	52	12.0000
HHCC	chr9:123371160-123371375(+)$1	215	188	192	12.0000
pppp	chr2:177296260-177296481(+)$1	221	40	44	12.0000
22ee	chr7:133272998-133273215(-)$1	217	188	192	12.0000
gggg	chr9:54759717-54759934(+)$1	217	61	65	12.0000
eeee	chr9:110842449-110842658(-)$1	209	106	110	12.0000
ffff	chr19:3893717-3893934(+)$1	217	116	120	12.0000
$$$$	chr19:42024022-42024232(-)$1	210	13	17	12.0000
dddd	chr2:113588454-113588664(+)$1	210	103	107	12.0000
====	chr1:133829958-133830176(+)$1	218	35	39	12.0000
qqcc	chr1:192769996-192770209(+)$1	213	158	162	12.0000
ccc!	chr5:110791441-110791661(-)$1	220	83	87	12.0000
:::D	chr11:53234058-53234274(+)$1	216	9	13	12.0000
HH::	chr9:123371138-123371353(+)$1	215	210	214	12.0000
dddm	chr9:65891998-65892218(+)$1	220	41	45	12.0000
FFF{	chr19:46729792-46730005(+)$1	213	27	31	12.0000
immm	chr18:36458525-36458744(+)$1	219	38	42	12.0000
gggg	chr9:123371013-123371249(+)$1	236	18	22	12.0000
qqdd	chrX:39628377-39628596(+)$1	219	104	108	12.0000
dddd	chr3:97477294-97477512(+)$1	218	40	44	12.0000

#DB
...)	chr11:20124759-20124972(+)$1	1	91	95	12.0000
((((	chr7:117203262-117203483(-)$1	1	120	124	12.0000
..((	chr10:60895372-60895590(-)$1	1	3	7	12.0000
....	chr19:46452639-46452857(-)$1	1	23	27	12.0000
))))	chr16:91671953-91672177(+)$1	1	78	82	12.0000
))))	chr9:31206703-31206926(+)$1	1	124	128	12.0000
...)	chr11:116711164-116711390(-)$1	1	109	113	12.0000
...)	chr11:74491024-74491235(-)$1	1	99	103	12.0000
((((	chr11:93806236-93806450(+)$1	1	139	143	12.0000
..((	chr5:45916365-45916578(+)$1	1	19	23	12.0000
.)))	chr9:113885064-113885275(+)$1	1	140	144	12.0000
.(((	chr1:33834498-33834722(-)$1	1	195	199	12.0000
..))	chr16:32020088-32020306(-)$1	1	112	116	12.0000
....	chr5:124819055-124819269(-)$1	1	35	39	12.0000
.)))	chr11:101350969-101351182(-)$1	1	35	39	12.0000
(((.	chr4:62050137-62050347(+)$1	1	71	75	12.0000
(.((	chr2:60085846-60086065(+)$1	1	23	27	12.0000
.)))	chr7:117203181-117203412(-)$1	1	49	53	12.0000
(((.	chr10:62269441-62269661(-)$1	1	109	113	12.0000
(((.	chr11:77994745-77994964(-)$1	1	96	100	12.0000
(..(	chr10:77526262-77526478(+)$1	1	6	10	12.0000
((((	chr17:23957127-23957339(+)$1	1	25	29	12.0000
))).	chr1:74442775-74443003(+)$1	1	221	225	12.0000
((((	chr16:58468280-58468497(+)$1	1	140	144	12.0000
(((.	chr5:123905354-123905571(+)$1	1	107	111	12.0000
((((	chr3:100488777-100488988(-)$1	1	1	5	12.0000
((((	chr3:99942193-99942411(-)$1	1	5	9	12.0000
((((	chr11:102024542-102024752(-)$1	1	27	31	12.0000
..))	chr6:65030400-65030610(+)$1	1	201	205	12.0000
(((.	chr14:35157175-35157390(+)$1	1	4	8	12.0000
((.(	chr6:82675203-82675432(-)$1	1	35	39	12.0000
..))	chr11:79846243-79846457(+)$1	1	185	189	12.0000
...(	chr6:87793733-87793945(-)$1	1	71	75	12.0000
((((	chr7:108971176-108971396(-)$1	1	16	20	12.0000
(((.	chr13:100191584-100191796(-)$1	1	13	17	12.0000
((.(	chr5:76052588-76052799(+)$1	1	91	95	12.0000
....	chr14:56167650-56167874(+)$1	1	24	28	12.0000
...(	chr15:98761881-98762096(-)$1	1	42	46	12.0000
.(((	chr1:63360312-63360529(-)$1	1	10	14	12.0000
(((.	chr8:89384812-89385022(+)$1	1	9	13	12.0000
....	chr17:46820676-46820889(-)$1	1	21	25	12.0000
..((	chr10:57236544-57236759(-)$1	1	40	44	12.0000
))).	chr17:23957068-23957282(+)$1	1	84	88	12.0000
((((	chr4:116371938-116372149(+)$1	1	75	79	12.0000
))))	chr13:6647808-6648026(-)$1	1	78	82	12.0000
((((	chr19:46150410-46150625(+)$1	1	171	175	12.0000
..((	chr4:128877968-128878178(+)$1	1	32	36	12.0000
))).	chr6:51411132-51411347(-)$1	1	54	58	12.0000
)..)	chr1:38235021-38235241(-)$1	1	117	121	12.0000
((((	chr9:110842413-110842644(-)$1	1	92	96	12.0000
..((	chr10:60895482-60895692(-)$1	1	105	109	12.0000
((.(	chr7:28066309-28066527(+)$1	1	80	84	12.0000
..))	chr11:75315974-75316190(+)$1	1	196	200	12.0000
.)))	chr16:16983452-16983676(+)$1	1	108	112	12.0000
).))	chr9:58100967-58101180(+)$1	1	118	122	12.0000
((((	chr6:117875281-117875495(+)$1	1	0	4	12.0000
))))	chr16:13814117-13814336(+)$1	1	40	44	12.0000
.((.	chr19:15979991-15980207(-)$1	1	64	68	12.0000
...(	chr3:58326589-58326800(-)$1	1	135	139	12.0000
((((	chr3:86590505-86590717(-)$1	1	29	33	12.0000
...)	chr7:117203223-117203443(-)$1	1	80	84	12.0000
((.(	chr19:5901137-5901353(-)$1	1	48	52	12.0000
))))	chr9:123371160-123371375(+)$1	1	188	192	12.0000
....	chr2:177296260-177296481(+)$1	1	40	44	12.0000
..))	chr7:133272998-133273215(-)$1	1	188	192	12.0000
))))	chr9:54759717-54759934(+)$1	1	61	65	12.0000
((((	chr9:110842449-110842658(-)$1	1	106	110	12.0000
((((	chr19:3893717-3893934(+)$1	1	116	120	12.0000
....	chr19:42024022-42024232(-)$1	1	13	17	12.0000
((((	chr2:113588454-113588664(+)$1	1	103	107	12.0000
((((	chr1:133829958-133830176(+)$1	1	35	39	12.0000
..))	chr1:192769996-192770209(+)$1	1	158	162	12.0000
(((.	chr5:110791441-110791661(-)$1	1	83	87	12.0000
...(	chr11:53234058-53234274(+)$1	1	9	13	12.0000
))..	chr9:123371138-123371353(+)$1	1	210	214	12.0000
(((.	chr9:65891998-65892218(+)$1	1	41	45	12.0000
(((.	chr19:46729792-46730005(+)$1	1	27	31	12.0000
(...	chr18:36458525-36458744(+)$1	1	38	42	12.0000
((((	chr9:123371013-123371249(+)$1	1	18	22	12.0000
..))	chrX:39628377-39628596(+)$1	1	104	108	12.0000
((((	chr3:97477294-97477512(+)$1	1	40	44	12.0000

#PSSM
U : 0.91	u : 0.08	
C : 0.91	c : 0.08	
U : 0.91	u : 0.08	
G : 0.91	g : 0.08	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
PARCLIP_JARID2_Kaneko2014_mm9_CDS_m3_run1.nuc.txt

#NT
GGA	chr7:108933869-108934081(+)$1	212	13	16	8.9999
GGA	chr4:149018905-149019122(+)$1	217	95	98	8.9999
GGA	chr17:32190712-32190936(+)$1	224	121	124	8.9999
GGA	chr11:83594615-83594839(+)$1	224	37	40	8.9999
GGA	chr19:7109064-7109283(-)$1	219	52	55	8.9999
GGA	chrX:133268424-133268642(-)$1	218	27	30	8.9999
GGA	chr6:67222769-67222984(+)$1	215	10	13	8.9999
GGA	chr6:8176772-8176989(+)$1	217	14	17	8.9999
GGA	chrX:148355529-148355741(+)$1	212	103	106	8.9999
GGA	chr4:44038234-44038453(+)$1	219	3	6	8.9999
GGA	chr17:45708291-45708501(-)$1	210	25	28	8.9999
GGA	chr11:86550593-86550812(-)$1	219	85	88	8.9999
GGA	chr10:44875269-44875482(+)$1	213	105	108	8.9999
GGA	chr11:97535986-97536197(+)$1	211	152	155	8.9999
GGA	chr6:33388289-33388506(+)$1	217	38	41	8.9999
GGA	chr17:88388686-88388900(+)$1	214	79	82	8.9999
GGA	chr1:135029783-135030003(+)$1	220	23	26	8.9999
GGA	chr4:118808856-118809069(+)$1	213	155	158	8.9999
GGA	chr6:126790539-126790758(-)$1	219	116	119	8.9999
GGA	chr17:32473341-32473557(-)$1	216	25	28	8.9999
GGA	chr14:52824585-52824800(-)$1	215	49	52	8.9999
GGA	chr9:58100967-58101180(+)$1	213	3	6	8.9999
GGA	chrM:13143-13365(-)$1	222	36	39	8.9999
GGA	chr13:98015176-98015388(+)$1	212	10	13	8.9999
GGA	chr1:138523466-138523680(+)$1	214	58	61	8.9999
GGA	chr15:59043136-59043357(+)$1	221	46	49	8.9999
GGA	chr14:57521736-57521947(+)$1	211	85	88	8.9999
GGA	chr3:123045954-123046178(+)$1	224	4	7	8.9999
GGA	chr6:134434213-134434426(-)$1	213	3	6	8.9999
GGA	chrX:108773314-108773532(-)$1	218	68	71	8.9999
GGA	chr17:21723591-21723802(+)$1	211	1	4	8.9999
GGA	chr6:33227111-33227323(+)$1	212	3	6	8.9999
GGA	chr2:24781675-24781893(-)$1	218	4	7	8.9999
GGA	chr7:29800757-29800972(-)$1	215	91	94	8.9999
GGA	chr7:3657267-3657487(+)$1	220	20	23	8.9999
GGA	chr3:90290050-90290260(+)$1	210	83	86	8.9999
GGA	chr1:193439531-193439744(+)$1	213	0	3	8.9999
GGA	chr4:88366562-88366777(-)$1	215	6	9	8.9999
GGA	chr11:82842529-82842748(-)$1	219	5	8	8.9999
GGA	chr15:12189229-12189447(+)$1	218	103	106	8.9999
GGA	chr17:36020078-36020291(+)$1	213	40	43	8.9999
GGA	chrX:156004285-156004499(+)$1	214	73	76	8.9999
GGA	chr2:168575422-168575646(-)$1	224	29	32	8.9999
GGA	chr15:102493349-102493561(-)$1	212	1	4	8.9999
GGA	chr4:21673787-21674010(+)$1	223	20	23	8.9999
GGA	chr14:31845595-31845810(+)$1	215	37	40	8.9999
GGA	chr17:23957127-23957339(+)$1	212	34	37	8.9999
GGA	chr2:130511419-130511641(-)$1	222	146	149	8.9999
GGA	chr16:17257946-17258158(+)$1	212	4	7	8.9999
GGA	chr8:69413061-69413279(+)$1	218	83	86	8.9999
GGA	chr13:58496910-58497128(-)$1	218	33	36	8.9999
GGA	chr19:10689315-10689527(+)$1	212	70	73	8.9999
GGA	chr3:96073686-96073903(+)$1	217	92	95	8.9999
GGA	chr6:71550747-71550966(-)$1	219	2	5	8.9999
gga	chr4:98404406-98404622(+)$1	216	55	58	8.9999
GGA	chr11:17847742-17847954(-)$1	212	5	8	8.9999
GGA	chr1:71654421-71654637(-)$1	216	65	68	8.9999
GGA	chr12:105932628-105932846(-)$1	218	144	147	8.9999
GGA	chr13:69765294-69765507(+)$1	213	7	10	8.9999
GGA	chr11:72260570-72260790(+)$1	220	87	90	8.9999
GGA	chrM:11725-11949(-)$1	224	42	45	8.9999
GGA	chr3:36938131-36938349(+)$1	218	82	85	8.9999
GGA	chr19:36963223-36963437(+)$1	214	46	49	8.9999
GGA	chr4:128877968-128878178(+)$1	210	13	16	8.9999
GGA	chr5:102336495-102336705(-)$1	210	32	35	8.9999
GGA	chr17:79371765-79371984(-)$1	219	73	76	8.9999
GGA	chr17:36024713-36024930(+)$1	217	112	115	8.9999
GGA	chr11:11867462-11867679(-)$1	217	0	3	8.9999
GGA	chr2:3413761-3413976(-)$1	215	7	10	8.9999
GGA	chr1:44230994-44231215(+)$1	221	11	14	8.9999
GGA	chr1:180264012-180264223(-)$1	211	31	34	8.9999
GGA	chr18:66143744-66143959(-)$1	215	194	197	8.9999
GGA	chr1:191482172-191482385(-)$1	213	11	14	8.9999
GGA	chr17:88383880-88384094(+)$1	214	39	42	8.9999
GGA	chr4:40923559-40923781(+)$1	222	26	29	8.9999
GGA	chr1:180251972-180252188(-)$1	216	71	74	8.9999
GGA	chr9:103226635-103226848(+)$1	213	96	99	8.9999
GGA	chr17:15093675-15093885(-)$1	210	74	77	8.9999
GGA	chr17:88389829-88390048(+)$1	219	13	16	8.9999
GGA	chr2:51953421-51953638(+)$1	217	164	167	8.9999
GGA	chr11:97038498-97038711(-)$1	213	90	93	8.9999
GGA	chr18:36916392-36916616(+)$1	224	117	120	8.9999
GGA	chr4:123076522-123076737(-)$1	215	23	26	8.9999
GGA	chr11:17847692-17847904(-)$1	212	13	16	8.9999
GGA	chr10:127553664-127553873(+)$1	209	42	45	8.9999
GGA	chr5:140917606-140917821(+)$1	215	35	38	8.9999
GGA	chr7:106628302-106628520(-)$1	218	15	18	8.9999
GGA	chr2:154710016-154710230(-)$1	214	47	50	8.9999
GGA	chr9:98497210-98497428(-)$1	218	81	84	8.9999
GGA	chr2:37240692-37240907(-)$1	215	100	103	8.9999
GGA	chr5:34186123-34186342(+)$1	219	69	72	8.9999
GGA	chr19:40986583-40986800(+)$1	217	58	61	8.9999
GGA	chr15:37933798-37934013(-)$1	215	156	159	8.9999
GGA	chr11:30018356-30018567(-)$1	211	126	129	8.9999
GGA	chr9:120864409-120864628(+)$1	219	36	39	8.9999

#otherMatches

#Struct PSSM
FFF	chr11:102168080-102168296(-)$1	216	6	9	8.9999
CKK	chr7:108933869-108934081(+)$1	212	13	16	8.9999
ccc	chr4:149018905-149019122(+)$1	217	95	98	8.9999
cc]	chr17:32190712-32190936(+)$1	224	121	124	8.9999
HHH	chr11:83594615-83594839(+)$1	224	37	40	8.9999
bbl	chr19:7109064-7109283(-)$1	219	52	55	8.9999
ff[	chrX:133268424-133268642(-)$1	218	27	30	8.9999
KKH	chr6:67222769-67222984(+)$1	215	10	13	8.9999
E::	chr6:8176772-8176989(+)$1	217	14	17	8.9999
2a2	chrX:148355529-148355741(+)$1	212	103	106	8.9999
ee!	chr4:44038234-44038453(+)$1	219	3	6	8.9999
CFF	chr17:45708291-45708501(-)$1	210	25	28	8.9999
hhh	chr11:86550593-86550812(-)$1	219	85	88	8.9999
cc]	chr10:44875269-44875482(+)$1	213	105	108	8.9999
dd:	chr11:97535986-97536197(+)$1	211	152	155	8.9999
fff	chr6:33388289-33388506(+)$1	217	38	41	8.9999
ggg	chr17:88388686-88388900(+)$1	214	79	82	8.9999
cc3	chr1:135029783-135030003(+)$1	220	23	26	8.9999
ggg	chr4:118808856-118809069(+)$1	213	155	158	8.9999
eee	chr6:126790539-126790758(-)$1	219	116	119	8.9999
HHH	chr17:32473341-32473557(-)$1	216	25	28	8.9999
g[a	chr14:52824585-52824800(-)$1	215	49	52	8.9999
D{C	chr9:58100967-58101180(+)$1	213	3	6	8.9999
a]a	chrM:13143-13365(-)$1	222	36	39	8.9999
DD{	chr13:98015176-98015388(+)$1	212	10	13	8.9999
HHH	chr1:138523466-138523680(+)$1	214	58	61	8.9999
ii!	chr15:59043136-59043357(+)$1	221	46	49	8.9999
:::	chr14:57521736-57521947(+)$1	211	85	88	8.9999
III	chr3:123045954-123046178(+)$1	224	4	7	8.9999
:::	chr6:134434213-134434426(-)$1	213	3	6	8.9999
cc]	chrX:108773314-108773532(-)$1	218	68	71	8.9999
CC:	chr17:21723591-21723802(+)$1	211	1	4	8.9999
EEc	chr6:33227111-33227323(+)$1	212	3	6	8.9999
dd[	chr2:24781675-24781893(-)$1	218	4	7	8.9999
fff	chr7:29800757-29800972(-)$1	215	91	94	8.9999
ddd	chr7:3657267-3657487(+)$1	220	20	23	8.9999
GGG	chr3:90290050-90290260(+)$1	210	83	86	8.9999
:::	chr1:193439531-193439744(+)$1	213	0	3	8.9999
:ee	chr4:88366562-88366777(-)$1	215	6	9	8.9999
app	chr11:82842529-82842748(-)$1	219	5	8	8.9999
[bb	chr15:12189229-12189447(+)$1	218	103	106	8.9999
eee	chr17:36020078-36020291(+)$1	213	40	43	8.9999
eee	chrX:156004285-156004499(+)$1	214	73	76	8.9999
iii	chr2:168575422-168575646(-)$1	224	29	32	8.9999
FFF	chr15:102493349-102493561(-)$1	212	1	4	8.9999
eee	chr4:21673787-21674010(+)$1	223	20	23	8.9999
hhh	chr14:31845595-31845810(+)$1	215	37	40	8.9999
ccc	chr17:23957127-23957339(+)$1	212	34	37	8.9999
cmm	chr2:130511419-130511641(-)$1	222	146	149	8.9999
:::	chr16:17257946-17258158(+)$1	212	4	7	8.9999
eee	chr8:69413061-69413279(+)$1	218	83	86	8.9999
fff	chr13:58496910-58497128(-)$1	218	33	36	8.9999
bbl	chr19:10689315-10689527(+)$1	212	70	73	8.9999
::F	chr3:96073686-96073903(+)$1	217	92	95	8.9999
:::	chr6:71550747-71550966(-)$1	219	2	5	8.9999
zgg	chr4:98404406-98404622(+)$1	216	55	58	8.9999
:::	chr11:17847742-17847954(-)$1	212	5	8	8.9999
ggg	chr1:71654421-71654637(-)$1	216	65	68	8.9999
HH}	chr12:105932628-105932846(-)$1	218	144	147	8.9999
LLL	chr13:69765294-69765507(+)$1	213	7	10	8.9999
iii	chr11:72260570-72260790(+)$1	220	87	90	8.9999
bb$	chrM:11725-11949(-)$1	224	42	45	8.9999
CKK	chr3:36938131-36938349(+)$1	218	82	85	8.9999
ggg	chr19:36963223-36963437(+)$1	214	46	49	8.9999
nnn	chr4:128877968-128878178(+)$1	210	13	16	8.9999
iii	chr5:102336495-102336705(-)$1	210	32	35	8.9999
www	chr17:79371765-79371984(-)$1	219	73	76	8.9999
ppp	chr17:36024713-36024930(+)$1	217	112	115	8.9999
fff	chr11:11867462-11867679(-)$1	217	0	3	8.9999
III	chr2:3413761-3413976(-)$1	215	7	10	8.9999
eem	chr1:44230994-44231215(+)$1	221	11	14	8.9999
ii:	chr1:180264012-180264223(-)$1	211	31	34	8.9999
c22	chr18:66143744-66143959(-)$1	215	194	197	8.9999
bmm	chr1:191482172-191482385(-)$1	213	11	14	8.9999
f22	chr17:88383880-88384094(+)$1	214	39	42	8.9999
ggg	chr4:40923559-40923781(+)$1	222	26	29	8.9999
hhh	chr1:180251972-180252188(-)$1	216	71	74	8.9999
eee	chr9:103226635-103226848(+)$1	213	96	99	8.9999
KKB	chr17:15093675-15093885(-)$1	210	74	77	8.9999
SSS	chr17:88389829-88390048(+)$1	219	13	16	8.9999
fff	chr2:51953421-51953638(+)$1	217	164	167	8.9999
EEE	chr11:97038498-97038711(-)$1	213	90	93	8.9999
vvv	chr18:36916392-36916616(+)$1	224	117	120	8.9999
DDD	chr4:123076522-123076737(-)$1	215	23	26	8.9999
fff	chr11:17847692-17847904(-)$1	212	13	16	8.9999
ooo	chr10:127553664-127553873(+)$1	209	42	45	8.9999
KCC	chr5:140917606-140917821(+)$1	215	35	38	8.9999
cc"	chr7:106628302-106628520(-)$1	218	15	18	8.9999
gmm	chr2:154710016-154710230(-)$1	214	47	50	8.9999
lll	chr9:98497210-98497428(-)$1	218	81	84	8.9999
eee	chr2:37240692-37240907(-)$1	215	100	103	8.9999
bmm	chr5:34186123-34186342(+)$1	219	69	72	8.9999
""e	chr19:40986583-40986800(+)$1	217	58	61	8.9999
JJJ	chr15:37933798-37934013(-)$1	215	156	159	8.9999
hhh	chr11:30018356-30018567(-)$1	211	126	129	8.9999
{EE	chr9:120864409-120864628(+)$1	219	36	39	8.9999

#DB
(((	chr11:102168080-102168296(-)$1	1	6	9	8.9999
(..	chr7:108933869-108934081(+)$1	1	13	16	8.9999
)))	chr4:149018905-149019122(+)$1	1	95	98	8.9999
)).	chr17:32190712-32190936(+)$1	1	121	124	8.9999
(((	chr11:83594615-83594839(+)$1	1	37	40	8.9999
((.	chr19:7109064-7109283(-)$1	1	52	55	8.9999
((.	chrX:133268424-133268642(-)$1	1	27	30	8.9999
..(	chr6:67222769-67222984(+)$1	1	10	13	8.9999
(..	chr6:8176772-8176989(+)$1	1	14	17	8.9999
.).	chrX:148355529-148355741(+)$1	1	103	106	8.9999
((.	chr4:44038234-44038453(+)$1	1	3	6	8.9999
(((	chr17:45708291-45708501(-)$1	1	25	28	8.9999
)))	chr11:86550593-86550812(-)$1	1	85	88	8.9999
)).	chr10:44875269-44875482(+)$1	1	105	108	8.9999
)).	chr11:97535986-97536197(+)$1	1	152	155	8.9999
)))	chr6:33388289-33388506(+)$1	1	38	41	8.9999
)))	chr17:88388686-88388900(+)$1	1	79	82	8.9999
)).	chr1:135029783-135030003(+)$1	1	23	26	8.9999
)))	chr4:118808856-118809069(+)$1	1	155	158	8.9999
(((	chr6:126790539-126790758(-)$1	1	116	119	8.9999
(((	chr17:32473341-32473557(-)$1	1	25	28	8.9999
(.(	chr14:52824585-52824800(-)$1	1	49	52	8.9999
(.(	chr9:58100967-58101180(+)$1	1	3	6	8.9999
).)	chrM:13143-13365(-)$1	1	36	39	8.9999
((.	chr13:98015176-98015388(+)$1	1	10	13	8.9999
(((	chr1:138523466-138523680(+)$1	1	58	61	8.9999
((.	chr15:59043136-59043357(+)$1	1	46	49	8.9999
...	chr14:57521736-57521947(+)$1	1	85	88	8.9999
(((	chr3:123045954-123046178(+)$1	1	4	7	8.9999
...	chr6:134434213-134434426(-)$1	1	3	6	8.9999
)).	chrX:108773314-108773532(-)$1	1	68	71	8.9999
((.	chr17:21723591-21723802(+)$1	1	1	4	8.9999
(((	chr6:33227111-33227323(+)$1	1	3	6	8.9999
((.	chr2:24781675-24781893(-)$1	1	4	7	8.9999
)))	chr7:29800757-29800972(-)$1	1	91	94	8.9999
(((	chr7:3657267-3657487(+)$1	1	20	23	8.9999
(((	chr3:90290050-90290260(+)$1	1	83	86	8.9999
...	chr1:193439531-193439744(+)$1	1	0	3	8.9999
.((	chr4:88366562-88366777(-)$1	1	6	9	8.9999
(..	chr11:82842529-82842748(-)$1	1	5	8	8.9999
.((	chr15:12189229-12189447(+)$1	1	103	106	8.9999
(((	chr17:36020078-36020291(+)$1	1	40	43	8.9999
)))	chrX:156004285-156004499(+)$1	1	73	76	8.9999
(((	chr2:168575422-168575646(-)$1	1	29	32	8.9999
(((	chr15:102493349-102493561(-)$1	1	1	4	8.9999
)))	chr4:21673787-21674010(+)$1	1	20	23	8.9999
)))	chr14:31845595-31845810(+)$1	1	37	40	8.9999
(((	chr17:23957127-23957339(+)$1	1	34	37	8.9999
(..	chr2:130511419-130511641(-)$1	1	146	149	8.9999
...	chr16:17257946-17258158(+)$1	1	4	7	8.9999
(((	chr8:69413061-69413279(+)$1	1	83	86	8.9999
(((	chr13:58496910-58497128(-)$1	1	33	36	8.9999
((.	chr19:10689315-10689527(+)$1	1	70	73	8.9999
..)	chr3:96073686-96073903(+)$1	1	92	95	8.9999
...	chr6:71550747-71550966(-)$1	1	2	5	8.9999
.))	chr4:98404406-98404622(+)$1	1	55	58	8.9999
...	chr11:17847742-17847954(-)$1	1	5	8	8.9999
(((	chr1:71654421-71654637(-)$1	1	65	68	8.9999
)).	chr12:105932628-105932846(-)$1	1	144	147	8.9999
...	chr13:69765294-69765507(+)$1	1	7	10	8.9999
)))	chr11:72260570-72260790(+)$1	1	87	90	8.9999
((.	chrM:11725-11949(-)$1	1	42	45	8.9999
(..	chr3:36938131-36938349(+)$1	1	82	85	8.9999
(((	chr19:36963223-36963437(+)$1	1	46	49	8.9999
...	chr4:128877968-128878178(+)$1	1	13	16	8.9999
(((	chr5:102336495-102336705(-)$1	1	32	35	8.9999
...	chr17:79371765-79371984(-)$1	1	73	76	8.9999
...	chr17:36024713-36024930(+)$1	1	112	115	8.9999
(((	chr11:11867462-11867679(-)$1	1	0	3	8.9999
(((	chr2:3413761-3413976(-)$1	1	7	10	8.9999
((.	chr1:44230994-44231215(+)$1	1	11	14	8.9999
)).	chr1:180264012-180264223(-)$1	1	31	34	8.9999
)..	chr18:66143744-66143959(-)$1	1	194	197	8.9999
(..	chr1:191482172-191482385(-)$1	1	11	14	8.9999
)..	chr17:88383880-88384094(+)$1	1	39	42	8.9999
(((	chr4:40923559-40923781(+)$1	1	26	29	8.9999
)))	chr1:180251972-180252188(-)$1	1	71	74	8.9999
(((	chr9:103226635-103226848(+)$1	1	96	99	8.9999
..(	chr17:15093675-15093885(-)$1	1	74	77	8.9999
...	chr17:88389829-88390048(+)$1	1	13	16	8.9999
)))	chr2:51953421-51953638(+)$1	1	164	167	8.9999
(((	chr11:97038498-97038711(-)$1	1	90	93	8.9999
...	chr18:36916392-36916616(+)$1	1	117	120	8.9999
(((	chr4:123076522-123076737(-)$1	1	23	26	8.9999
)))	chr11:17847692-17847904(-)$1	1	13	16	8.9999
...	chr10:127553664-127553873(+)$1	1	42	45	8.9999
.((	chr5:140917606-140917821(+)$1	1	35	38	8.9999
((.	chr7:106628302-106628520(-)$1	1	15	18	8.9999
(..	chr2:154710016-154710230(-)$1	1	47	50	8.9999
...	chr9:98497210-98497428(-)$1	1	81	84	8.9999
(((	chr2:37240692-37240907(-)$1	1	100	103	8.9999
(..	chr5:34186123-34186342(+)$1	1	69	72	8.9999
..(	chr19:40986583-40986800(+)$1	1	58	61	8.9999
)))	chr15:37933798-37934013(-)$1	1	156	159	8.9999
)))	chr11:30018356-30018567(-)$1	1	126	129	8.9999
.((	chr9:120864409-120864628(+)$1	1	36	39	8.9999

#PSSM
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000